Exemplos de get_molecular_condition em Python

Exemplo n.º 1

def test_get_molecular_condition_dec():
    lst = KQMLList.from_string('(:type "decrease" :quantity (:type "total" ' +\
                               ':entity (:description "%s")))' % ekb_braf)
    mc = tra_module.get_molecular_condition(lst)
    assert mc.condition_type == 'decrease'
    assert mc.quantity.quant_type == 'total'
    assert mc.quantity.entity.name == 'BRAF'

Exemplo n.º 2

def test_apply_condition_multiple():
    model = _get_gk_model()
    lst = KQMLList.from_string('(:type "multiple" :value 2.5 ' +
                               ':quantity (:type "total" ' +
                               ':entity (:description "%s")))' % ekb_map2k1)
    mc = tra_module.get_molecular_condition(lst)
    apply_condition(model, mc)
    assert model.parameters['MAP2K1_0'].value == 250

Exemplo n.º 3

def test_apply_condition_decrease():
    model = _get_gk_model()
    lst = KQMLList.from_string('(:type "decrease" ' +
                               ':quantity (:type "total" ' +
                               ':entity (:description "%s")))' % ekb_map2k1)
    mc = tra_module.get_molecular_condition(lst)
    pold = model.parameters['MAP2K1_0'].value
    apply_condition(model, mc)
    assert model.parameters['MAP2K1_0'].value < pold

Exemplo n.º 4

def test_get_molecular_condition_multiple():
    lst = KQMLList.from_string('(:type "multiple" :value 2 ' +
                               ':quantity (:type "total" ' +
                               ':entity (:description "%s")))' % ekb_braf)
    mc = tra_module.get_molecular_condition(lst)
    assert mc.condition_type == 'multiple'
    assert mc.value == 2.0
    assert mc.quantity.quant_type == 'total'
    assert mc.quantity.entity.name == 'BRAF'

Exemplo n.º 5

def test_get_molecular_condition_exact():
    lst = KQMLList.from_string(
        '(:type "exact" :value (:value 0 :type "number") ' +
        ':quantity (:type "total" ' +
        ':entity (:description "%s")))' % ekb_braf)
    mc = tra_module.get_molecular_condition(lst)
    assert mc.condition_type == 'exact'
    assert mc.value.quant_type == 'number'
    assert mc.quantity.quant_type == 'total'
    assert mc.quantity.entity.name == 'BRAF'

Exemplo n.º 6

def test_apply_condition_exact():
    model = _get_gk_model()
    lst = KQMLList.from_string(
        '(:type "exact" :value (:value 0 :type "number") ' +
        ':quantity (:type "total" ' +
        ':entity (:description "%s")))' % ekb_map2k1)
    mc = tra_module.get_molecular_condition(lst)
    apply_condition(model, mc)
    assert model.parameters['MAP2K1_0'].value == 0
    mc.value.value = 2000
    apply_condition(model, mc)
    assert model.parameters['MAP2K1_0'].value == 2000

Exemplo n.º 7

def test_get_molecular_condition_badentity():
    lst = KQMLList.from_string('(:type "exact" :value 2 ' +
                               ':quantity (:type "total" ' +
                               ':entity (:description "xyz")))')
    mc = tra_module.get_molecular_condition(lst)

Exemplo n.º 8

def test_get_molecular_condition_badvalue():
    lst = KQMLList.from_string('(:type "multiple" :value "xyz" ' +
                               ':quantity (:type "total" ' +
                               ':entity (:description "%s")))' % ekb_braf)
    mc = tra_module.get_molecular_condition(lst)

Exemplo n.º 9

Arquivo: tra_test.py Projeto: dianakolusheva/bioagents

def test_get_molecular_condition_badvalue2():
    lst = KQMLList.from_string('(:type "exact" :value 2 ' +
                               ':quantity (:type "total" ' +
                               ':entity (:description %s)))' % clj_braf)
    tra_module.get_molecular_condition(lst)