Exemplos de GeneProf.get_gene_expression em Python

Exemplo n.º 1

Arquivo: test_geneprof.py Projeto: schryer/bioservices

def test_3():
    g = GeneProf(verbose=False)
    g.get_gene_id("mouse", "C_ENSG", "ENSMUSG00000059552")
    g.get_gene_id("human", "C_RSEQ", "NM_005657")
    g.get_gene_id("human", "any", "NM_005657")
    g.get_external_gene_id("mouse", "715", "C_ENSG")
    g.get_external_gene_id("mouse", "2981", "C_RSEQ")
    g.get_external_gene_id("mouse", "2981", "C_NAME")
    g.get_list_idtypes("mouse")
    g.get_list_idtypes("human")
    g.get_gene_expression("mouse", "715", with_sample_info=True)
    g.get_gene_expression("mouse", "715", output="RAW")
    g.get_gene_expression("mouse", "715", frmt="txt", with_sample_info=True)
    g.get_gene_expression("mouse", "715", frmt="rdata", with_sample_info=True)

Exemplo n.º 2

Arquivo: test_geneprof.py Projeto: cxhernandez/bioservices

def test_3():
    g = GeneProf(verbose=False)
    g.get_gene_id("mouse", "C_ENSG", "ENSMUSG00000059552")
    g.get_gene_id("human", "C_RSEQ", "NM_005657")
    g.get_gene_id("human", "any", "NM_005657")
    g.get_external_gene_id("mouse","715", "C_ENSG")
    g.get_external_gene_id("mouse","2981", "C_RSEQ")
    g.get_external_gene_id("mouse","2981", "C_NAME")
    g.get_list_idtypes("mouse")
    g.get_list_idtypes("human")
    g.get_gene_expression("mouse", "715", with_sample_info=True)
    g.get_gene_expression("mouse", "715", output="RAW")
    g.get_gene_expression("mouse", "715", frmt="txt", with_sample_info=True)
    g.get_gene_expression("mouse", "715", frmt="rdata", with_sample_info=True)