"""
Biothings API
Support running biothings.web as a module
>> python -m biothings.web
>> python -m biothings.web --dir=~/mygene.info/src
>> python -m biothings.web --dir=~/mygene.info/src --conf=config_web
>> python -m biothings.web --conf=biothings.web.settings.default
See more supported parameters in biothings.web.launcher.
"""
from biothings.web.launcher import main
main()
"""
https://pending.biothings.io/
https://biothings.ncats.io/
"""
from biothings.web.launcher import main
from web.handlers import EXTRA_HANDLERS
if __name__ == "__main__":
main(EXTRA_HANDLERS, {"static_path": "static"})
from aiocron import crontab
from biothings.web.launcher import main
from discovery.handlers import HANDLERS, TemplateHandler
from discovery.notify import update_n3c_routine
from discovery.utils.backup import daily_backup_routine
def routine():
update_n3c_routine()
daily_backup_routine()
def run_routine():
thread = Thread(target=routine, daemon=True)
thread.start()
if __name__ == '__main__':
crontab('0 0 * * *', func=run_routine,
start=True) # run daily at mid-night
main(HANDLERS, {
"default_handler_class": TemplateHandler,
"default_handler_args": {
"filename": "404.html",
"status_code": 404
}
},
use_curl=True)
from tornado.web import StaticFileHandler, RedirectHandler
from biothings.web.launcher import main
if __name__ == "__main__":
main([
# override default frontpage
(r"/", RedirectHandler, {
"url": "/standalone",
"permanent": False
}),
(r"/demo/?()", StaticFileHandler, {
"path": "docs/demo",
"default_filename": "index.html"
}),
(r"/standalone/?()", StaticFileHandler, {
"path": "docs/standalone",
"default_filename": "index.html"
}),
])
define("webapp", default=False, help="Run server with frontend webapp.")
class WebAppHandler(RequestHandler):
def get(self):
self.render(os.path.join(ASSETS_PATH, 'index.html'))
class NotFoundHandler(RequestHandler):
def get(self):
self.render(os.path.join(ASSETS_PATH, "404.html"))
if __name__ == "__main__":
options.parse_command_line()
# Run with webapp
if options.webapp:
main([(r"/", WebAppHandler),
(r"/css/(.*)", "tornado.web.StaticFileHandler", {
"path": os.path.join(ASSETS_PATH, "css")
}),
(r"/js/(.*)", "tornado.web.StaticFileHandler", {
"path": os.path.join(ASSETS_PATH, "js")
}),
(r"/img/(.*)", "tornado.web.StaticFileHandler", {
"path": os.path.join(ASSETS_PATH, "img")
}), (r"/.*", NotFoundHandler)])
else:
# Run only backend
main()
from biothings.web.launcher import main
from tornado.web import RedirectHandler
from web.handlers import ApiViewHandler, MainHandler, SpecialHandler
from web.handlers.genomics import routes as genomics_routes
if __name__ == '__main__':
main([
*genomics_routes, (r"/", MainHandler),
(r"/v1/(.*)", RedirectHandler, {
"url": "/covid19/{0}"
}), (r"/try-by-doctype/resources/?", SpecialHandler),
(r"/try/.+", ApiViewHandler), (r"/try/.+/.+", ApiViewHandler)
]) # additionals