class Geocode:
def __init__(self, geocoderCache=True, printStatus=False):
self.printStatus = printStatus
self.geocoderCache = geocoderCache
if self.geocoderCache:
self.db = FileBackend('./geo-cache')
def getGeo(self, lon, lat):
if self.geocoderCache:
try:
nodeObj = self.db.get(GeoAssign, {'lat': lat, 'lon': lon})
nodeObj['cached'] = True
return nodeObj
except GeoAssign.DoesNotExist:
pass
if self.printStatus:
print('lon: ' + str(lon) + ', lat: ' + str(lat) +
' not in cache - start lookup at Nominatim-API')
geolocator = Nominatim()
location = geolocator.reverse([lat, lon], timeout=20)
if 'address' in location.raw:
location = location.raw['address']
nodeObj = GeoAssign({'lat': lat, 'lon': lon, 'payload': location})
self.db.save(nodeObj)
self.db.commit()
nodeObj['cached'] = False
return nodeObj
else:
# got no results (i.e. coordinates are incorrect)
return None
def open_database(self, dbpath): # (self, dbpath, attrs={}, **kwargs)
if os.path.basename(dbpath) == self.name:
self.dbpath = dbpath # opening existing Visinum database
elif os.path.isdir(os.path.join(dbpath, self.name)):
self.dbpath = os.path.join(dbpath,
self.name) # opening existing database
logger.info("Found Visinum database %s in directory %s" %
(self.name, dbpath))
elif os.path.isdir(dbpath):
self.dbpath = os.path.join(dbpath, self.name)
logger.info("Creating new Visinum database %s in directory %s" %
(self.name, dbpath))
else:
logger.error("Database path (dbpath) incorrectly specified %s" %
(dbpath, ))
raise ValueError(
"Database path (dbpath) incorrectly specified %s" % (dbpath, ))
self.db = FileBackend(self.dbpath, {'serializer_class': 'json'})
logger.info("Opening Visinum database %s" % (self.dbpath, ))
config_attrs = self.get_config()
"""try:
#config_attrs = self.db.get(self.DbDocClass, {'visinum_type' : 'db_config'})
config_attrs = self.get_config()
except self.DbDocClass.DoesNotExist:
self.set_config( {'visinum_type' : 'db_config',
'title' : os.path.basename( os.path.dirname(self.dbpath) ),
'path_orig' : self.dbpath,
'UUID': make_uuid(version=3, namespace='uuid.NAMESPACE_URL', name=self.dbpath)
} )
#config_attrs.update(attrs)
#self.create_new_item(config_attrs, config_attrs, **kwargs )"""
self.config_attrs = config_attrs
def on_data(self, data):
dict_data = json.loads(data)
db_data = {}
try:
# Ignore retweets
if dict_data['retweeted'] == False:
try:
pp("GET DATA")
# Get relevant key value pairs only
for KEY in DESIRED_KEYS:
db_data[KEY] = dict_data[KEY]
db_data['screen_name'] = dict_data['user']['screen_name']
cards = parse_text(db_data['text'])
# Add it to the db_data dict to import into BlitzDB
db_data['cards'] = cards
pp(db_data)
except:
pp("GET DATA FAILED")
try:
# Import into BlitzDB
backend = FileBackend("./test-db")
tweet = Tweet(db_data)
backend.save(tweet)
# backend.commit()
pp("DATABASE INSERTION SUCCESSFUL")
except:
pp("DATA INSERTION FAILED")
except:
pp("Retweet detected, skipping...")
return True
class JavManagerDB:
def __init__(self):
self.jav_db = FileBackend('jav_manager.db')
def upcreate_jav(self, jav_obj: dict):
# uniform car to upper case
jav_obj['car'] = str(jav_obj['car']).upper()
# set pk to car
jav_obj['pk'] = jav_obj['car']
# set default to no opinion
#0-want, 1-viewed, 2-no opinion 3-local 4-downloading
jav_obj.setdefault('stat', 2)
_jav_doc = JavObj(jav_obj)
_jav_doc.save(self.jav_db)
self.jav_db.commit()
def get_by_pk(self, pk: str):
return self.jav_db.get(JavObj, {'pk': pk.upper()})
def pk_exist(self, pk: str):
try:
self.jav_db.get(JavObj, {'pk': pk})
return True
except DoesNotExist:
return False
class Geocode:
def __init__(self, geocoderCache = True, printStatus = False):
self.printStatus = printStatus
self.geocoderCache = geocoderCache
if self.geocoderCache:
self.db = FileBackend('./geo-cache')
def getGeo(self, lon, lat):
if self.geocoderCache:
try:
nodeObj = self.db.get(GeoAssign,{'lat' : lat, 'lon' : lon})
nodeObj['cached'] = True
return nodeObj
except GeoAssign.DoesNotExist:
pass
if self.printStatus:
print('lon: '+str(lon)+', lat: '+str(lat)+' not in cache - start lookup at Nominatim-API')
geolocator = Nominatim()
location = geolocator.reverse([lat, lon], timeout=20)
if 'address' in location.raw:
location = location.raw['address']
nodeObj = GeoAssign({
'lat' : lat,
'lon' : lon,
'payload' : location
})
self.db.save(nodeObj)
self.db.commit()
nodeObj['cached'] = False
return nodeObj
else:
# got no results (i.e. coordinates are incorrect)
return None
def _query(self, f, q):
try:
out = f(*q)
except KeyError:
self.db = FileBackend(expanduser("~/.omesa/db"))
f = self.db.filter
out = f(*q)
return out
def removeHexFromProcessingDB(hexnite,real):
if real:
backend = FileBackend("./realdb")
else:
backend = FileBackend("./testdb")
hex = backend.filter(hexes, {'hexnite': hexnite})
backend.delete(hex)
'Hexnite',hexnite,'removed from database'
class Activity(commands.Cog):
def __init__(self, bot):
self.bot = bot
self.backend = FileBackend('./activity-db')
self.backend.autocommit = True
self.scanned = False
bot.logger.info("Activity plugin ready")
def _maintain(self, bot):
"""Query the database and apply any configured roles"""
pass
def _find_one(self, member: discord.Member) -> Union[ActivityRecord, None]:
"""Searches for a response in the DB, returning it if found, or None if it doesn't exist or there are multiples.
This exists to tie up the Blitzdb boilerplate in one place."""
try:
comm = self.backend.get(ActivityRecord, {'author': member.id})
except ActivityRecord.DoesNotExist:
return None
except ActivityRecord.MultipleDocumentsReturned:
self.bot.logger.error(
f"Discarding multiple results returned for '{member.display_name(member.id)}'"
)
return None
else:
return comm
async def on_ready(self):
if not self.scanned:
self.scanned = True
g = self.bot.guilds[0] # type: discord.Guild
self.bot.logger.info(
f"Beginning server scan. {len(g.members)} to update.")
for m in g.members:
m: discord.Member
if not m.bot and m.id != self.bot.id:
activity_record = self._find_one(m)
if activity_record:
continue
else:
a = ActivityRecord({
"author": m.id,
"lastspeak": datetime.datetime.now()
})
self.backend.save(a)
@commands.Cog.listener()
async def on_message(self, message: discord.message):
if not self.bot.ready():
return
activity_record = self._find_one(message.author)
activity_record["lastspeak"] = message.created_at
self.backend.save(activity_record)
pass
def __init__(self, bot):
self.bot: 'PixlBot' = bot
self.config = bot.config['TwitchNotifier']
self.backend = FileBackend('db')
self.backend.autocommit = True
self.bot.logger.info("Twitch notifier plugin ready")
self.uuids = []
self.online_uuids = []
self.sslcontext = ssl.SSLContext()
self.sslcontext.load_cert_chain(self.config['cert_path'],
self.config['key_path'])
self._twitch_init_()
def __init__(self):
retry = 0
while retry < 3:
try:
self.jav_db = FileBackend('jav_manager.db')
break
except Exception as e:
print(f'read file db error {e}, gonna retry')
retry += 1
sleep(5)
if not self.jav_db:
raise Exception('read local db error')
def get_project_and_backend(path):
try:
project_config = get_project_config(path+"/.checkmate")
except (IOError,):
sys.stderr.write("No project configuration found!\n")
exit(-1)
backend_config = project_config['backend']
project_class = project_config.get('project_class','DiskProject')
if not project_class in settings.models:
sys.stderr.write("Invalid project type: %s. Maybe the plugin is missing?" % project_class)
exit(-1)
ProjectClass = settings.models[project_class]
if backend_config['driver'] == 'mongo':
if not pymongo_support:
sys.stderr.write("Encountered pymongo backend, but pymongo is not installed!")
exit(-1)
pymongo_db = pymongo.MongoClient()[backend_config['db']]
backend = MongoBackend(pymongo_db,autoload_embedded = False,allow_documents_in_query = False)
elif backend_config['driver'] == 'file':
backend = FileBackend(path+"/.checkmate",autoload_embedded = False)
else:
sys.stdout.write("Unknown backend driver: %s" % backend_config['driver'])
try:
project = backend.get(ProjectClass,{'pk' : project_config['project_id']})
except ProjectClass.DoesNotExist:
project = ProjectClass({'pk' : project_config['project_id']})
backend.save(project)
project.path = path
backend.save(project)
backend.commit()
return project,backend
def vote(pk):
print(pk)
if not current_user:
return redirect("/login")
if request.method == 'GET':
if pk + '_vote' in request.cookies:
return redirect('/already_voted')
redirect_to_index = redirect("/thankyou")
response = current_app.make_response(redirect_to_index)
response.set_cookie(pk + '_vote', value='true')
waifu = current_app.dbbackend.get(Waifu, {"pk": pk})
ip = request.environ.get('HTTP_X_REAL_IP', request.remote_addr)
try:
if ip in waifu.votes_l:
return redirect("/already_voted")
waifu.votes_l.append(ip)
except:
waifu.votes_l = list()
waifu.votes_l.append(ip)
user_m = current_user._get_current_object()
if waifu in user_m.voted_waifus:
return redirect("/already_voted")
user_m.voted_waifus.append(waifu)
current_app.dbbackend.save(user_m)
waifu.votes = waifu.votes + 1
current_app.dbbackend.save(waifu)
current_app.dbbackend.commit()
current_app.dbbackend = FileBackend("./database")
return response
def _query(self, f, q):
try:
out = f(*q)
except KeyError:
self.db = FileBackend(expanduser("~/.omesa/db"))
f = self.db.filter
out = f(*q)
return out
class Database:
def __init__(self):
self.backend = FileBackend(settings['database_location'])
def save(self, entry):
self.backend.save(entry)
self.backend.commit()
def search(self, table, query):
if table == 'user':
doc = User
elif table == 'subm':
doc = Submission
try:
return self.backend.get(doc, query)
except doc.DoesNotExist:
return None
def main():
backend = FileBackend("./my-db") #locate the backend
fin = file("Cu_material_db.yaml","r") #read the yaml file
in_param = yaml.load(fin) #load it
name = in_param.get("Name") #extract out the parameters
cond = in_param.get("Conductivity")
n = in_param.get("Carrier_Density")
supercond = in_param.get("Superconductivity")
res = in_param.get("Resistance")
right_input_flag = True #check the superconducting type matches the number of critical fields
if supercond.get("Superconducting"): #create a new entry for a superconductor
right_input_flag = False if len(supercond.get("Critical_Fields")) != supercond.get("Type") else True
if right_input_flag:
new = Material({"name": name, "cond": cond, "n": n,
"sc": supercond.get("Superconducting"),
"sctype" : supercond.get("Type"),
"Tc" : supercond.get("Critical_Temperature"),
"nc" : supercond.get("Critical_Current_Density"),
"Hc" : supercond.get("Critical_Fields"),
"L" : supercond.get("Penetration_Depth"),
"Tref" : res.get("Ref_Temperature"),
"res" : res.get("Resistivity"),
"alpha" : res.get("Temperature_Coefficient")
})
else:
print "Superconducting type and number of critical fields don't match!"
else: #create a new entry for a non-superconductor
new = Material({"name": name, "cond": cond, "n": n,
"sc": supercond.get("Superconducting"),
"Tref" : res.get("Ref_Temperature"),
"res" : res.get("Resistivity"),
"alpha" : res.get("Temperature_Coefficient")
})
if right_input_flag:
new.save(backend) #save the entry in the database
#always update the database when there's an old entry of this material in the database
mtrl = backend.filter(Material, {"name":name})
mtrl.delete()
backend.commit()
print "Input succeeded!"
def removeHexFromProcessingDB(hexnite, real):
if real:
backend = FileBackend("./realdb")
else:
backend = FileBackend("./testdb")
hex = backend.filter(hexes, {'hexnite': hexnite})
backend.delete(hex)
'Hexnite', hexnite, 'removed from database'
class Database(object):
"""Blitzdb database."""
def __init__(self):
"""Load backend."""
self.db = FileBackend(expanduser("~/.omesa/db"))
def _query(self, f, q):
try:
out = f(*q)
except KeyError:
self.db = FileBackend(expanduser("~/.omesa/db"))
f = self.db.filter
out = f(*q)
return out
def save(self, doc):
"""Save document do db."""
self.db.save(doc)
self.db.commit()
def fetch(self, doc, q):
"""Filter and return first entry."""
try:
return self._query(self.db.filter, (doc, q))[0]
except IndexError:
print(str(doc), str(q))
print("File does not exist.")
def get_component(self, doc, name):
# FIXME: see if returning non-decoded is relevant for anything
try:
return sr.decode(
dict(self._query(self.db.filter, (doc, {
'name': name
}))[0]))
except IndexError:
print(str(doc), {'name': name})
print("File does not exist.")
def getall(self, doc):
"""Returns all entries in db."""
return [d for d in self._query(self.db.filter, (doc, {}))]
class Database(object):
"""Blitzdb database."""
def __init__(self):
"""Load backend."""
self.db = FileBackend(expanduser("~/.omesa/db"))
def _query(self, f, q):
try:
out = f(*q)
except KeyError:
self.db = FileBackend(expanduser("~/.omesa/db"))
f = self.db.filter
out = f(*q)
return out
def save(self, doc):
"""Save document do db."""
self.db.save(doc)
self.db.commit()
def fetch(self, doc, q):
"""Filter and return first entry."""
try:
return self._query(self.db.filter, (doc, q))[0]
except IndexError:
print(str(doc), str(q))
print("File does not exist.")
def get_component(self, doc, name):
# FIXME: see if returning non-decoded is relevant for anything
try:
return sr.decode(dict(self._query(
self.db.filter, (doc, {'name': name}))[0]))
except IndexError:
print(str(doc), {'name': name})
print("File does not exist.")
def getall(self, doc):
"""Returns all entries in db."""
return [d for d in self._query(self.db.filter, (doc, {}))]
def __init__(self, driver_type, connection_string):
super(BlitzDBDALDriver, self).__init__()
self.database_name = 'datmo_db'
if driver_type == "file":
from blitzdb import FileBackend
self.backend = FileBackend(connection_string)
elif driver_type == "mongo":
from pymongo import MongoClient
from blitzdb.backends.mongo import Backend as MongoBackend
c = MongoClient(connection_string)
#create a new BlitzDB backend using a MongoDB database
self.backend = MongoBackend(c[self.database_name])
class DataProvider:
def __init__(self, db_path):
self.db = FileBackend(db_path)
def last(self, user):
return get_first_func(self.db.filter(WeightRecord, {'user': user, 'last': True}))
def all_mornings(self, user):
db_filter = self.db.filter(WeightRecord, {'user': user, 'morning': True})
#if db_filter:
# for i in db_filter:
# logging.debug("T0 {}".format(i.time))
sor = sorted(db_filter, key=lambda x: x.time, reverse=False)
#if sor:
# for i in sor:
# logging.debug("T1 {}".format(i.time))
return sor
def last_morning(self, data):
return get_first_func(self.db.filter(WeightRecord, {
'last': True, 'morning': True, 'user': data.user}))
def today_morning(self, data):
return get_first_func(self.db.filter(WeightRecord, {
'year': data.year, 'month': data.month, 'day': data.day, 'user': data.user, 'morning': True}))
def save(self, record):
record.save(self.db)
def commit(self):
self.db.commit()
def __init__(self, bot):
self.cfg = PluginConfig(self)
self.image_filetypes = self.cfg.get("image_filetypes").split(",")
self.db = FileBackend(self.cfg.get("main_db"))
self.tumblr = pytumblr.TumblrRestClient(
self.cfg.get("consumer_key"),
self.cfg.get("consumer_secret"),
self.cfg.get("oauth_token"),
self.cfg.get("oauth_secret"),
)
irc3.base.logging.log(
irc3.base.logging.WARN, "Tumblr poster ready! Posting all URLs with: %s" % self.image_filetypes
)
def wrapped_f(bot, update, *args, **kwargs):
msg_entry = Message(json.loads(update.to_json()))
backend = FileBackend(settings.ACCESS_LOG_DB_PATH)
backend.save(msg_entry)
backend.commit()
return f(bot, update, *args, **kwargs)
def cleardb(real=False):
password = '******'
user_input = raw_input('Please Enter Password: '******'Incorrect Password, terminating... \n')
if real:
backend = FileBackend("./realdb")
else:
backend = FileBackend("./testdb")
images = backend.filter(preprocessing, {'status': 'Submitted'})
images.delete()
hexen = backend.filter(hexes, {'num_target_g': 0})
hexen.delete()
exposuren = backend.filter(exposures,
{'status': 'Awaiting additional exposures'})
exposuren.delete()
backend.commit()
def __init__(self, bot):
self.bot = bot
self.cfg = PluginConfig(self)
self.db = FileBackend(self.cfg.get('main_db'))
mtt = MessageRetargeter(bot)
self.msg = mtt.msg
web = Flask(__name__, template_folder=tmpl_dir)
mako = MakoTemplates()
mako.init_app(web)
# Add routes here
web.add_url_rule('/edit_web/<args>', 'edit_web', self.edit_web, methods=['GET', 'POST'])
_thread.start_new_thread(web.run, (), {'host': '0.0.0.0'})
class DataProvider:
def __init__(self, db_path):
self.db = FileBackend(db_path)
def last(self, user):
return get_first_func(
self.db.filter(WeightRecord, {
'user': user,
'last': True
}))
def all_mornings(self, user):
db_filter = self.db.filter(WeightRecord, {
'user': user,
'morning': True
})
#if db_filter:
# for i in db_filter:
# logging.debug("T0 {}".format(i.time))
sor = sorted(db_filter, key=lambda x: x.time, reverse=False)
#if sor:
# for i in sor:
# logging.debug("T1 {}".format(i.time))
return sor
def last_morning(self, data):
return get_first_func(
self.db.filter(WeightRecord, {
'last': True,
'morning': True,
'user': data.user
}))
def today_morning(self, data):
return get_first_func(
self.db.filter(
WeightRecord, {
'year': data.year,
'month': data.month,
'day': data.day,
'user': data.user,
'morning': True
}))
def save(self, record):
record.save(self.db)
def commit(self):
self.db.commit()
def cleardb(real=False):
password = '******'
user_input = raw_input('Please Enter Password: '******'Incorrect Password, terminating... \n')
if real:
backend = FileBackend("./realdb")
else:
backend = FileBackend("./testdb")
images = backend.filter(preprocessing, {'status': 'Submitted'})
images.delete()
hexen = backend.filter(hexes,{'num_target_g':0})
hexen.delete()
exposuren = backend.filter(exposures,{'status':'Awaiting additional exposures'})
exposuren.delete()
backend.commit()
class ImageToTumblr(object):
def __init__(self, bot):
self.cfg = PluginConfig(self)
self.image_filetypes = self.cfg.get("image_filetypes").split(",")
self.db = FileBackend(self.cfg.get("main_db"))
self.tumblr = pytumblr.TumblrRestClient(
self.cfg.get("consumer_key"),
self.cfg.get("consumer_secret"),
self.cfg.get("oauth_token"),
self.cfg.get("oauth_secret"),
)
irc3.base.logging.log(
irc3.base.logging.WARN, "Tumblr poster ready! Posting all URLs with: %s" % self.image_filetypes
)
def post_image(self, text, poster):
# Strip everything but the address
m = re.match(r".*(?P<url>http.*)", text)
url = m.group("url")
# Make sure we didn't do this one already
try:
self.db.get(PostedImage, {"url": url})
except PostedImage.DoesNotExist:
try:
# First we post it to tumblr
p = self.tumblr.create_photo(
"mmerpimages", state="published", source=str(url), caption="Found by %s" % poster
)
irc3.base.logging.log(irc3.base.logging.WARN, "Posting image by %s: %s" % (poster, url))
# And then record the fact that we did.
self.db.save(PostedImage({"url": url}))
self.db.commit()
except:
irc3.base.logging.log(irc3.base.logging.WARN, "Could not post to tumblr: %s" % url)
return
else:
irc3.base.logging.log(irc3.base.logging.WARN, "Not posting duplicate image: %s" % url)
return
@irc3.event(irc3.rfc.PRIVMSG) # Triggered on every message anywhere.
def parse_image(self, target, mask, data, event):
for extension in self.image_filetypes:
if "." + extension.lower() in data:
self.post_image(data, mask.nick)
def __init__(self, bot):
self.bot = bot
self.backend = FileBackend('./activity-db')
self.backend.autocommit = True
self.scanned = False
bot.logger.info("Activity plugin ready")
from blitzdb import Document, FileBackend
backend = FileBackend('./mob-db')
'''
A user shall have the following attributes: name, email, username/handle, twitter/facebook ID, auth token, karma points, as well
as future references to posts, comments and votes.
'''
class User(Document):
pass
'''
A post shall have the following attributes: title, content, a reference to the user who posted it, timestamp, a list containing
IDs of comments in chronological order, as well as a list of vote IDs.
'''
class Post(Document):
pass
'''
A comment shall have the following attributes: content, a reference to the author.
'''
class Comment(Document):
pass
def __init__(self, geocoderCache=True, printStatus=False):
self.printStatus = printStatus
self.geocoderCache = geocoderCache
if self.geocoderCache:
self.db = FileBackend('./geo-cache')
from blitzdb import Document
from blitzdb import FileBackend
from lxml import etree
import Benotete_Abgabe3.Teilaufgabe1.Aufgabe3 as aufg1
db = FileBackend("./my-db")
class Proceedings(Document):
pass
class Inproceedings(Document):
pass
# Die XML-Datenbasis
#datei = '../test.xml'
datei = '../dblp-2017-05-02.xml'
# Teilaufgabe 2, Nr. 1
def get_inproceedings_by_year(datei, year):
inproceedings = []
# iterparser zum Einlesen der Datei unter Berücksichtigung ausschließlich der "End"-Events
context = etree.iterparse(datei,
events=('end', ),
load_dtd=True,
encoding='ISO-8859-1',
huge_tree=True)
# Iterieren über alle Elemente des Iterparser
def main():
backend = FileBackend("./my-db") #locate the database
fin = file("Cu_calc_input.yaml","r") #read the yaml file
in_param = yaml.load(fin) #load it
material = in_param.get("Material") #extract the parameters
circuit_param = in_param.get("Circuit_Design")
exp_param = in_param.get("Experimental_Setup")
step = in_param.get("Output").get("Current_Sweep_Step")
c_w = circuit_param.get("Width")
c_R = circuit_param.get("Radius")
c_t = circuit_param.get("Thickness")
c_w_else = circuit_param.get("Width_Else")
c_l_else = circuit_param.get("Length_Else")
file_str = "%s_w_%d_um_R_%d_um_t_%d_nm" %(material, c_w*1e6, c_R*1e6, c_t*1e9) #set the output file
fout = file(file_str+".txt","w")
mtrl = backend.get(Material, {"name": material}) #find the material information in the database
print mtrl.name
x = c_w/c_R #w/R ratio
##########LIQUID NITROGEN TEMPERATURE CASE################
#calculate the resistance of the trace to determine current upper limit
trace_res_77 = CALC_RES(c_w, c_R, c_t, c_w_else, c_l_else, 77., mtrl.Tref, mtrl.res, mtrl.alpha)
current_limit_77 = min(exp_param.get("Current_Limit"), exp_param.get("Voltage_Limit")/trace_res_77)
#calculate the signals
output_77 = np.tile(np.arange(0,current_limit_77,step),(3,1)).transpose() #currents, V_G, V_S
for i in range(0,output_77.shape[0]):
output_77[i,1] = SIG_NORMAL(mtrl.n, c_w, c_t, output_77[i,0])*MODEL_CRC(x)
output_77[i,2] = HALL_POT(mtrl.n, c_w, c_t, output_77[i,0])*MODEL_LIN(x)
#Plot the data
plt.ioff()
fig = plt.figure()
plt.plot(output_77[:,0],output_77[:,1], label=r"$V_G$ (77K)", marker="x",linestyle="None",color="k")
plt.plot(output_77[:,0],output_77[:,2], label=r"$V_H$ (77K)", marker="+",linestyle="None",color="k")
#Store the data
fout.write("##########LIQUID NITROGEN TEMPERATURE CASE################\n")
res_str = "Resistance = %.2e ohm\n\n" %trace_res_77
fout.write(res_str)
fout.write("I(A)\tV_G(V)\tV_H(V)\n")
np.savetxt(fout,output_77,fmt="%.2e")
##########ROOM TEMPERATURE CASE################
trace_res_293 = CALC_RES(c_w, c_R, c_t, c_w_else, c_l_else, 293., mtrl.Tref, mtrl.res, mtrl.alpha)
current_limit_293 = min(exp_param.get("Current_Limit"), exp_param.get("Voltage_Limit")/trace_res_293)
output_293 = np.tile(np.arange(0,current_limit_293,step),(3,1)).transpose() #currents, V_G, V_S
for i in range(0,output_293.shape[0]):
output_293[i,1] = SIG_NORMAL(mtrl.n, c_w, c_t, output_293[i,0])*MODEL_CRC(x)
output_293[i,2] = HALL_POT(mtrl.n, c_w, c_t, output_293[i,0])*MODEL_LIN(x)
plt.plot(output_293[:,0],output_293[:,1], label=r"$V_G$ (Room Temp.)", marker="s",mfc="None",linestyle="None",color="k")
plt.plot(output_293[:,0],output_293[:,2], label=r"$V_H$ (Room temp.)", marker="D",mfc="None",linestyle="None",color="k")
fout.write("\n##########ROOM TEMPERATURE CASE################\n")
res_str = "Resistance = %.2e ohm\n\n" %trace_res_293
fout.write(res_str)
fout.write("I(A)\tV_G(V)\tV_H(V)\n")
np.savetxt(fout,output_293,fmt="%.2e")
##########SUPERCONDUCTING CASE################
if mtrl.sc:
output_sc = np.tile(np.arange(0,exp_param.get("Current_Limit"),step),(2,1)).transpose() #currents, V_G, V_S
for i in range(0,output_sc.shape[0]):
output_sc[i,1] = SIG_SC(mtrl.L, c_w, c_t, output_sc[i,0])*MODEL_SCCJ(x)
plt.plot(output_sc[:,0],output_sc[:,1], label=r"$V_G$ (Supercond.)",color="k")
fout.write("\n##########SUPERCONDUCTING CASE################\n")
fout.write("I(A)\tV_G(V)\n")
np.savetxt(fout,output_sc,fmt="%.2e")
#plot details
plt.xlabel("Input current (A)",fontsize="15")
plt.ylabel("Potential difference (V)",fontsize="15")
plt.yscale("log")
plt.title(material)
plt.legend(loc=4)
plt.savefig(file_str+".png",dpi=300,format="png")
plt.close(fig)
fin.close()
fout.close()
#!/usr/bin/env python
import os
import json
import math
from blitzdb import Document
from blitzdb import FileBackend
backend = FileBackend("./my-db")
dir = "selected_docs/"
corpus = 20000000000.0
corpus_matches = 640000000.0
uri = {}
class Link(Document):
pass
def log2(x):
return math.log(x) / math.log(2)
def computeTF(total_words, word_matches):
tf = float(word_matches) / float(total_words)
return tf
def computeIDF():
idf = log2(corpus / corpus_matches)
return idf
def create_app(configfile=None):
app = Flask(__name__)
AppConfig(app, configfile) # Flask-Appconfig is not necessary, but
# highly recommend =)
# https://github.com/mbr/flask-appconfig
Bootstrap(app)
login_manager = LoginManager()
login_manager.init_app(app)
login_manager.login_view='login'
#NoSQL Backend
backend = FileBackend("/tmp/wakeonlan.db")
backend.create_index(Device, fields={'id':1}, unique=True)
#TEST Devices
alldevices = backend.filter(Device, {})
if len(alldevices) == 0 :
try:
pc1 = Device({"id" : "001122334411", "name" : "PC 1", "mac" : "00:11:22:33:44:11", "ip":"192.168.222.111", 'status' : ''})
backend.save(pc1)
pc2 = Device({"id" : "001122334422","name" : "PC 2", "mac" : "00:11:22:33:44:22", "ip":"192.168.222.112", 'status' : ''})
backend.save(pc2)
pc3 = Device({"id" : "001122334433","name" : "Router", "mac" : "00:11:22:33:44:33", "ip":"192.168.222.1", 'status' : ''})
backend.save(pc3)
backend.commit()
except:
backend.revert()
pass
# in a real app, these should be configured through Flask-Appconfig
app.config['SECRET_KEY'] = 'devkey'
# app.config['RECAPTCHA_PUBLIC_KEY'] = \
# '6Lfol9cSAAAAADAkodaYl9wvQCwBMr3qGR_PPHcw'
def getDeviceById(id):
device = None
try:
device = backend.get(Device, {'id':id})
except:
pass
return device
def pingDeviceById(id):
#Get Device
device = backend.get(Device, {'id':id})
if device:
#Get Device's IP
ip = device['ip']
result = pingDeviceByIp(ip)
#Update Status UP/Down/''
if result==0:
device['status'] = 'UP'
else:
device['status'] = 'DOWN'
backend.save(device)
return result
return None
def wolDeviceById(id):
#Get Device
device = backend.get(Device, {'id':id})
if device:
#WoL for Device MAC
mac = device['mac']
wolDeviceByMac(mac)
return None
@login_manager.user_loader
def user_loader(user_id):
"""Given *user_id*, return the associated User object.
:param unicode user_id: user_id (email) user to retrieve
"""
user_entry = User.getById(user_id)
if user_entry is not None:
user = User(user_entry[0], user_entry[1])
return user
else:
return None
@app.route('/', methods=('GET', 'POST'))
@login_required
def index():
form = ExampleForm()
form.validate_on_submit() # to get error messages to the browser
# flash('critical message', 'critical')
# flash('error message', 'error')
# flash('warning message', 'warning')
# flash('info message', 'info')
# flash('debug message', 'debug')
# flash('different message', 'different')
# flash('uncategorized message')
alldevices = None
alldevices = backend.filter(Device, {}).sort('name')
#app.logger.info('Devices: %s' % (len(alldevices) ) )
return render_template('index.html', form=form, devices = alldevices)
@app.route('/login', methods=('GET', 'POST'))
def login():
if request.method == 'GET':
form = LoginForm()
form.validate_on_submit() # to get error messages to the browser
return render_template('login.html', form=form)
username = request.form['username']
password = request.form['password']
user_entry = User.get(username, password)
if user_entry is None:
flash('Username or Passord is invalid', 'error')
return redirect(url_for('login'))
user = User(user_entry[0], user_entry[1])
login_user(user, remember=True)
return redirect(request.args.get('next') or url_for('index'))
@app.route("/logout", methods=["GET"])
@login_required
def logout():
"""Logout the current user."""
user = current_user
user.authenticated = False
logout_user()
return redirect(url_for('login'))
@app.route('/addDevice', methods=('GET', 'POST'))
@login_required
def addDevice():
if request.method == 'GET':
form = AddDeviceForm()
form.validate_on_submit() # to get error messages to the browser
return render_template('add_device.html', form=form)
name = request.form['name']
mac = request.form['mac']
ip = request.form['ip']
id = mac.replace(':','')
try:
newDevice = Device({"id" : id, "name" : name, "mac" : mac, "ip":ip, 'status' : ''})
backend.save(newDevice)
backend.commit()
except:
flash('Error creating new Device', 'error')
pass
return redirect(url_for('index'))
@app.route('/editListDevice', methods=('GET', 'POST'))
@login_required
def editListDevice():
alldevices = None
alldevices = backend.filter(Device, {}).sort('name')
return render_template('list_device.html', devices = alldevices)
@app.route('/pingDevice/<deviceId>', methods=('GET', 'POST'))
@login_required
def pingDevice(deviceId):
app.logger.info('pingDevice: %s' % (deviceId ) )
device = getDeviceById(deviceId)
result = pingDeviceById(deviceId)
app.logger.info('pingDevice: %s' % (result ) )
if result is None:
flash('Ping - Error on device %s' % (device['name']), 'error')
elif result == 0:
flash('Device %s is UP' % (device['name']), 'info')
else:
flash('Device %s is DOWN' % (device['name']), 'error')
return redirect(url_for('index'))
@app.route('/wolDevice/<deviceId>', methods=('GET', 'POST'))
@login_required
def wolDevice(deviceId):
app.logger.info('wolDevice: %s' % (deviceId ) )
device = getDeviceById(deviceId)
result = wolDeviceById(deviceId)
if device:
flash('WoL sent to %s' % (device['name']), 'info')
else:
flash('WoL error', 'error')
return redirect(url_for('index'))
@app.route('/deleteDevice/<deviceId>', methods=('GET', 'POST'))
@login_required
def deleteDevice(deviceId):
app.logger.info('wolDevice: %s' % (deviceId ) )
device = getDeviceById(deviceId)
try:
backend.delete(device)
backend.commit()
flash('%s Deleted' % (device['name']), 'info')
except:
flash('Delete error', 'error')
pass
return redirect(url_for('editListDevice'))
return app
from collections import Counter
# Xml FilePath
file_path = "dblp-2017-05-02.xml"
# Für BlitzDB
class Inproceedings(Document):
pass
class Proceedings(Document):
pass
backend = FileBackend("./dblp-db")
# Ende BlitzDb
# Hauptmenü zur einfachen Navigation. Teilaufgaben
def hauptmenu():
print("\nBitte wählen Sie aus folgenden Punkten:")
while True:
print("\n--Hauptmenü--")
print("\n1 - Teilaufgabe 1.1"
"\n2 - Teilaufgabe 1.2"
"\n3 - Teilaufgabe 1.3"
"\n4 - Teilaufgabe 2.1"
"\n5 - Teilaufgabe 2.2"
import os
from blitzdb import Document
from blitzdb import FileBackend
backend = FileBackend('./file_db')
class File(Document):
pass
class Category(Document):
pass
class CategoryItem():
def __init__(self):
self.cat_name = ''
self.cat_screen_name = ''
self.cat_path = ''
def save_cat(self):
catinfo = {}
catinfo['cat_name'] = self.cat_name
catinfo['cat_screen_name'] = self.cat_screen_name
catinfo['cat_slug'] = self.cat_name.replace(' ', '-')
catinfo['cat_path'] = self.cat_path
cat = Category(catinfo)
backend.save(cat)
from blitzdb import Document
from blitzdb import FileBackend
import csv
backend = FileBackend("my-db")
output_folder = 'output/'
class inproceedings(Document):
pass
# Takes data (list), takes a header-list and a filename, and saves the data into a csv-file
def save_csv(save_data, save_header, filename):
with open(output_folder + filename, 'w+', encoding='windows-1252') as f:
writer = csv.DictWriter(f, save_header, delimiter=';', extrasaction='ignore', lineterminator='\n')
writer.writeheader()
writer.writerows(save_data)
print('Datensätze gespeichert!')
# finds all inproceedings of a given editor
def find_data_by_editor(editor):
results = backend.filter(inproceedings, {})
result_list = []
for result in results:
try:
if (result["proc:editor"] == editor):
result_list.append(result)
#!/usr/bin/python
# -*- coding: utf-8 -*-
import tweepy, secrets, time, random, json
from blitzdb import Document, FileBackend
backend = FileBackend(".db")
class User(Document):
pass
with open('phrases.json') as f:
phrases = json.load(f)
users = backend.filter(User,{'twitted':False})
auth = tweepy.OAuthHandler(secrets.CONSUMER_KEY, secrets.CONSUMER_SECRET)
auth.set_access_token(secrets.ACCES_TOKEN, secrets.ACCES_TOKEN_SECRET)
api = tweepy.API(auth)
for startup in users:
user = startup.get('user').split('?')[0]
print user
if len(user) > 1:
phrase = random.choice(phrases)
print phrase % user
api.update_status(phrase % user)
startup.twitted = True
startup.save(backend)
else:
class JavManagerDB:
def __init__(self):
self.jav_db = FileBackend('jav_manager.db')
def create_indexes(self):
print('creating index for stat')
self.jav_db.create_index(JavObj, 'stat')
def rebuild_index(self):
self.jav_db.rebuild_index(self.jav_db.get_collection_for_cls(JavObj),
'stat')
def bulk_list(self):
return self.jav_db.filter(JavObj, {})
def partial_search(self, search_string: str):
rt = self.jav_db.filter(JavObj, {'pk': {'$regex': search_string}})[:20]
return rt
def query_on_filter(self, filter_on: dict, page=1, limit=8):
rt = self.jav_db.filter(JavObj, filter_on)
rt_max_page = ceil(len(rt) / limit)
rt_list = rt[(page - 1) * limit:(page) * limit]
return [dict(x) for x in rt_list], rt_max_page
def upcreate_jav(self, jav_obj: dict):
# uniform car to upper case
jav_obj['car'] = str(jav_obj['car']).upper()
# set pk to car
jav_obj['pk'] = jav_obj['car']
# pull existing data since this is update function
try:
current_jav_obj = dict(self.get_by_pk(jav_obj['car']))
# overwrite current db dict with input dict
current_jav_obj.update(jav_obj)
except DoesNotExist:
# set default to no opinion
#0-want, 1-viewed, 2-no opinion 3-local 4-downloading
jav_obj.setdefault('stat', 2)
_jav_doc = JavObj(jav_obj)
_jav_doc.save(self.jav_db)
self.jav_db.commit()
print('writed ', jav_obj)
def get_by_pk(self, pk: str):
return self.jav_db.get(JavObj, {'pk': pk.upper()})
def pk_exist(self, pk: str):
try:
self.jav_db.get(JavObj, {'pk': pk})
return True
except DoesNotExist:
return False
class Profiles(object):
def __init__(self, bot):
self.bot = bot
self.cfg = PluginConfig(self)
self.db = FileBackend(self.cfg.get('main_db'))
mtt = MessageRetargeter(bot)
self.msg = mtt.msg
web = Flask(__name__, template_folder=tmpl_dir)
mako = MakoTemplates()
mako.init_app(web)
# Add routes here
web.add_url_rule('/edit_web/<args>', 'edit_web', self.edit_web, methods=['GET', 'POST'])
_thread.start_new_thread(web.run, (), {'host': '0.0.0.0'})
@command
def learn(self, mask, target, args):
"""
Stores information allowing for later retrieval. Names are downcased for sanity.
Usage:
%%learn <name> <information>...
"""
name = args['<name>'].lower()
info = ' '.join(args['<information>'])
try:
profile = self.db.get(Profile, {'name': name})
except Profile.DoesNotExist:
profile = Profile(
{
'name': name,
'owner': mask.nick.lower(),
'lines': [info],
'random': False,
'public': False
}
)
profile.save(self.db)
self.db.commit()
self.msg(mask, target, 'Your data "%s" has been stored.' % name)
return
except Profile.MultipleDocumentsReturned:
self.msg(mask, target, "Found more than one %s. This is bad! Please notify the bot owner." % name)
return
if is_allowed_to(Action.edit, mask.nick, profile):
lines_to_append = profile.lines
lines_to_append.append(info)
profile.save(self.db)
self.db.commit()
self.msg(mask, target, 'Your data "%s" has been updated.' % name)
return
else:
self.msg(mask, target, 'You are not authorized to edit "%s". Ask %s instead.'
% (name, profile.owner))
return
@command
def query(self, mask, target, args):
"""
Retrieve the information associated with <name>. If the item is marked random, then one random item will be
returned.
Usage:
%%query <name>
?? <name>
"""
name = args['<name>'].lower()
try:
profile = self.db.get(Profile, {'name': name})
except Profile.DoesNotExist:
self.msg(mask, target, 'I cannot find "%s" in the records.' % name)
return
if profile.random:
self.msg(mask, target, get_flags(profile) + random.choice(profile.lines))
else:
for line in profile.lines:
self.msg(mask, target, get_flags(profile) + line)
if len(profile.lines) >= int(self.cfg.get('throttle_max')):
sleep(int(self.cfg.get('throttle_time')))
@command
def forget(self, mask, target, args):
"""
Delete <name> from the records. Only the person who created the item can remove it.
Usage:
%%forget <name>
"""
name = args['<name>'].lower()
try:
profile = self.db.get(Profile, {'name': name})
except Profile.DoesNotExist:
self.msg(mask, target, 'I cannot find "%s" in the records.' % name)
return
if is_allowed_to(Action.delete, mask.nick, profile):
self.db.delete(profile)
self.db.commit()
self.msg(mask, target, "%s has been deleted." % name)
else:
self.msg(mask, target, 'You are not authorized to delete "%s". Ask %s instead.'
% (name, profile.owner))
@command(permission='admin', show_in_help_list=False)
def rmf(self, mask, target, args):
"""
Delete <name> from the records without checking permissions.
Usage:
%%rmf <name>
"""
name = args['<name>'].lower()
try:
profile = self.db.get(Profile, {'name': name})
except Profile.DoesNotExist:
self.msg(mask, target, 'I cannot find "%s" in the records.' % name)
return
self.db.delete(profile)
self.db.commit()
self.msg(mask, target, "%s has been deleted." % name)
@command(permission='admin', show_in_help_list=False)
def chown(self, mask, target, args):
"""
Change the owner of <name> to <newowner>.
Usage:
%%chown <name> <newowner>
"""
name = args['<name>'].lower()
newowner = args['<newowner>'].lower()
try:
profile = self.db.get(Profile, {'name': name})
except Profile.DoesNotExist:
self.msg(mask, target, 'I cannot find "%s" in the records.' % name)
return
profile.owner = newowner
self.db.save(profile)
self.db.commit()
self.msg(mask, target, "%s is now owned by %s." % (name, newowner))
@command
def toggle_public(self, mask, target, args):
"""
Changes whether <name> is publicly editable or not
Usage:
%%toggle_public <name>
"""
profile = args['<name>'].lower()
try:
profile = self.db.get(Profile, {'name': profile})
except Profile.DoesNotExist:
self.msg(mask, target, 'I cannot find "%s" in the records.' % profile)
return
if is_allowed_to(Action.edit, mask.nick, profile):
if profile.public:
profile.public = False
self.msg(mask, target, '"%s" is no longer publicly editable.' % profile)
else:
profile.public = True
self.msg(mask, target, '"%s" is now publicly editable.' % profile)
self.db.save(profile)
self.db.commit()
return
else:
self.msg(mask, target, 'You are not authorized to edit "%s". Ask %s instead.'
% (profile, profile.owner))
return
@command
def toggle_random(self, mask, target, args):
"""
Toggle the randomness of an item, so that it shows a single random line instead of all lines when queried.
Usage:
%%toggle_random <name>
"""
name = args['<name>'].lower()
try:
profile = self.db.get(Profile, {'name': name})
except Profile.DoesNotExist:
self.msg(mask, target, 'I cannot find "%s" in the records.' % name)
return
if is_allowed_to(Action.edit, mask.nick, profile):
profile.random = not profile.random
self.msg(mask, target, 'Random mode for %s is set to: %s' % (profile.name, profile.random))
profile.save(self.db)
self.db.commit()
else:
self.msg(mask, target, 'You are not authorized to edit "%s". Ask %s instead.'
% (name, profile.owner))
irc3.base.logging.log(irc3.base.logging.WARN,
"%s tried to edit %s, but can't since it's owned by %s" %
(mask.nick, profile.name, profile.owner)
)
@event("(@(?P<tags>\S+) )?:(?P<mask>\S+) PRIVMSG (?P<target>\S+) :\?\? (?P<data>.*)")
def easy_query(self, mask, target, data):
self.bot.get_plugin(Commands).on_command(cmd='query', mask=mask, target=target, data=data)
####
# All web stuff below this point
#
@command
def edit(self, mask, target, args):
"""
Sends you a webpage link to edit <name>. Great for longer profiles. Make sure to keep the URL you are given
secure, as with it, anyone can edit your profiles.
Usage:
%%edit <name>
"""
# TODO: Clear any existing sessions the user has
data = {
'id': str(uuid.uuid4()),
'name': mask.nick,
'profile': args['<name>']
}
name = args['<name>'].lower()
try:
profile = self.db.get(Profile, {'name': name})
except Profile.DoesNotExist:
self.msg(mask, target, 'I cannot find "%s" in the records.' % name)
return
if is_allowed_to(Action.fulledit, mask.nick, profile):
newses = Session(data)
self.db.save(newses)
self.db.commit()
self.bot.privmsg(mask.nick,
"An editor has been set up for you at http://skaianet.tkware.us:5000/edit_web/%s" % str(
data['id']))
self.bot.privmsg(mask.nick,
"Be very careful not to expose this address - with it, anyone can edit your stuff")
else:
self.msg(mask, target, 'You are not authorized to webedit "%s". Ask %s instead.'
% (name, profile.owner))
def edit_web(self, args):
# Web endpoint: /edit_web/<args>
if request.method == 'GET':
# Does the session exist?
try:
edit_session = self.db.get(Session, {'id': args})
except Session.DoesNotExist:
return render_template('youfail.html',
bot=self.bot,
failreason='Invalid Session',
userfail=True)
# Does the profile exist?
name = edit_session.profile
try:
profile = self.db.get(Profile, {'name': name.lower()})
except Profile.DoesNotExist:
return render_template('youfail.html',
bot=self.bot,
failreason='I cannot find "%s" in the records.' % name
)
# Kick off to the edit page!
return render_template('edit.html',
bot=self.bot,
profile=profile,
username=edit_session.name,
sessionid=edit_session.id
)
elif request.method == 'POST':
# We have to look up the session ID one more time. Something could have happened to the profile
# since we created the session.
try:
edit_session = self.db.get(Session, {'id': request.form['ID']})
except Session.DoesNotExist:
return render_template('youfail.html',
bot=self.bot,
failreason='Invalid Session',
userfail=True)
name = request.form['profile']
try:
profile = self.db.get(Profile, {'name': request.form['profile']})
except Profile.DoesNotExist:
return render_template('youfail.html',
bot=self.bot,
failreason='I cannot find "%s" in the records.' % name,
userfail=True
)
# Now with the profile in hand, blank the lines field and rebuild it from the form.
# Here we grab all numeric items from the submission, sort it, and one by one refill the DB object.
lines = [item for item in request.form if item.isdigit()]
lines.sort()
profile.lines = []
for item in lines:
profile.lines.append(request.form[item])
self.db.save(profile)
self.db.delete(edit_session)
self.db.commit()
return render_template('done.html',
bot=self.bot,
profile=profile.name
)
class Movie(Document):
pass
the_godfather = Movie({'name': 'The Godfather','year':1972,'pk':1})
marlon_brando = Actor({'name':'Marlon Brando','pk':2})
al_pacino = Actor({'name' : 'Al Pacino','pk':3})
print("Backend")
from blitzdb import FileBackend
loc = "./my-db"
backend = FileBackend(loc)
print("Created Backend", loc)
the_godfather.save(backend)
marlon_brando.save(backend)
al_pacino.save(backend)
print("Backend Saved and committed:", os.path.realpath(os.curdir))
# print(backend.get(Movie,{'pk':1}))
# or...
the_godfather = backend.get(Movie,{'name' : 'The Godfather'})
print("the_godfather",the_godfather)
def __init__(self, trigger_id, jsonfilelist, triggerdir, datadir, real,
trigger_path):
#os.system('kinit -k -t /var/keytab/desgw.keytab desgw/des/[email protected]')
tstart = time.time()
if real:
self.backend = FileBackend("./realdb")
else:
self.backend = FileBackend("./testdb")
try:
thisevent = self.backend.get(Trigger, {'id': trigger_id})
print 'Found this event in desgw database...'
except Trigger.DoesNotExist:
thisevent = Trigger({
'id':
trigger_id,
'jsonfilelist':
jsonfilelist,
'triggerpath':
triggerdir,
'mapspath':
datadir,
'jobids': [
(0, 'jsonfile_corresponding_to_jobid.json'),
],
})
print 'Database entry created!'
self.trigger_id = trigger_id
self.trigger_path = trigger_path
self.backend.save(thisevent)
self.backend.commit()
with open(os.path.join(triggerdir, "strategy.yaml"), "r") as f:
self.config = yaml.safe_load(f)
self.filterobslist = np.array(self.config['exposure_filter'],
dtype='str')
self.strategydict = {}
for f in np.unique(self.filterobslist):
self.strategydict[f] = len(
self.filterobslist[self.filterobslist == f])
self.connection = ea.connect(DATABASE)
self.cursor = self.connection.cursor()
self.jsonfilelist = jsonfilelist
print self.jsonfilelist
if hardjson:
self.jsonfilelist = hj
self.trigger_id = trigger_id
self.datadir = datadir
self.triggerdir = triggerdir
self.processingdir = os.path.join(self.triggerdir, 'PROCESSING')
if not os.path.exists(self.processingdir):
os.makedirs(self.processingdir)
dire = './processing/' + trigger_id + '/'
if not os.path.exists(dire):
os.makedirs(dire)
with open(os.path.join(triggerdir, "strategy.yaml"), "r") as f:
self.strategy = yaml.safe_load(f)
with open("jobmanager.yaml", "r") as g:
self.jmconfig = yaml.safe_load(g)
q1 = "select expnum,nite,mjd_obs,telra,teldec,band,exptime,propid,obstype,object from exposure where " \
"nite>20130828 and nite<20150101 and expnum<300000 and obstype='object' order by expnum" # y1 images
self.connection.query_and_save(q1, './processing/exposuresY1.tab')
q2 = "select expnum,nite,mjd_obs,radeg,decdeg,band,exptime,propid,obstype,object from prod.exposure where " \
"nite>20150901 and obstype='object' order by expnum" # y2 and later
self.connection.query_and_save(q2, './processing/exposuresCurrent.tab')
os.system(
'cat ./processing/exposuresY1.tab ./processing/exposuresCurrent.tab > ./processing/exposures.list'
)
self.submit_all_jsons_for_sejobs(
) #preps all DES images that already exist
tfin = time.time()
print 'TOTAL SE JOBS TIME', tfin - tstart
#sys.exit()
self.monitor_images_from_mountain(
) #A loop that waits for images off mountain and submits for processing
from blitzdb import Document
class Movie(Document):
pass
class Actor(Document):
pass
the_godfather = Movie({'name': 'The Godfather','year':1972,'pk':1L})
marlon_brando = Actor({'name':'Marlon Brando','pk' : 1L})
al_pacino = Actor({'name' : 'Al Pacino','pk' : 2L})
from blitzdb import FileBackend
backend = FileBackend("/tmp/movies")
backend.register(Movie,{'collection':'movies'})
backend.register(Actor,{'collection':'actors'})
backend.filter(Movie,{}).delete()
backend.filter(Actor,{}).delete()
the_godfather.save(backend)
marlon_brando.save(backend)
al_pacino.save(backend)
the_godfather = backend.get(Movie,{'pk':1L})
#or...
the_godfather = backend.get(Movie,{'name' : 'The Godfather'})
if __name__ == '__main__':
def save_new_credit(data, pk=None):
new_credit = Score({'credit': data, 'pk': pk}) if pk else Score({'credit': data})
new_credit.save(backend)
backend.commit()
username = '******'
password = '******'
s = Session(username, password)
status, message = s.login()
if status == STATUS_SUCCESS:
html = s.get(URL_TOTALSCORE)
if html.content is not None:
backend = FileBackend("./emis.db")
selector = etree.HTML(html.content.decode('gbk'))
current_credit = int(selector.xpath(r'//*[@color="#FF0000"]/text()')[0])
try:
saved_credit = backend.get(Score, {'pk': 1})
if current_credit != '':
if current_credit > int(saved_credit.credit):
saved_credit.credit = current_credit
saved_credit.save(backend)
backend.commit()
BmobSmsUtils().send_sms_template(['18395960722'], 'new_score')
print('Credit changed, SMS sent!')
elif current_credit == int(saved_credit.credit):
class Memos(object):
def __init__(self, bot):
self.bot = bot
self.cfg = PluginConfig(self)
self.db = FileBackend(self.cfg.get('main_db'))
mtt = MessageRetargeter(bot)
self.msg = mtt.msg
@command
def note(self, target, mask, args):
"""
Leaves a note for <name>, containing <text>. The next time I see <name> speak, I will deliver any notes they
have waiting.
Notes taken in private are delivered in private, and vice versa.
Usage:
%%note <name> <text>...
"""
if mask.is_channel:
pubmsg = True
else:
pubmsg = False
if args['<name>'] == self.bot.nick:
self.msg(mask, target, "You can't leave notes for me, silly :)")
return
newmemo = Memo(
{
'sender': target.nick.lower(),
'recipient': args['<name>'].lower(),
'public': pubmsg,
'timestamp': ctime(),
'text': ' '.join(args['<text>'])
}
)
newmemo.save(self.db)
self.db.commit()
confirmation_msg = "Your note for %s has been queued for delivery." % args['<name>']
self.msg(mask, target, confirmation_msg)
@irc3.event(irc3.rfc.PRIVMSG) # Triggered on every message anywhere.
def check_notes(self, target, mask, data, event):
del data, event
try:
msgs = self.db.filter(Memo, {'recipient': mask.nick.lower()})
msgword = "message" if len(msgs) < 2 else "messages" # Fix: I have 1 messages for you!
except Memo.DoesNotExist:
return
if len(msgs) == 0:
return
# Avoid telling people they have messages in public, if any of them are set public=False
if contains_private_messages(msgs):
self.msg(mask, mask.nick, "I have %s %s for you, %s!" % (len(msgs), msgword, mask.nick))
else:
self.msg(mask, target, "I have %s %s for you, %s!" % (len(msgs), msgword, mask.nick))
# Actually deliver the memos
for msg in msgs:
# This looks ridiculous but we don't care about the timezone really, only the relative time
# from the local system clock.
now = datetime.datetime.strptime(ctime(), "%a %b %d %H:%M:%S %Y")
reltime = humanize.naturaltime(now - datetime.datetime.strptime(msg.timestamp, "%a %b %d %H:%M:%S %Y"))
message_text = "%s // %s // %s" % (msg.sender, reltime, msg.text)
if msg.public:
self.msg(mask, target, message_text)
self.db.delete(msg)
else:
self.bot.privmsg(mask.nick, message_text)
self.db.delete(msg)
self.db.commit()
def start(args):
"""
Start the app
:param args: input parameters
:type args: Namespace
"""
# --------------------------------------------------------------------------
# Set Database connection
# --------------------------------------------------------------------------
if args.DB_TYPE == "file":
# File oriented DB
if not args.FILE_DB_PATH:
_path = os.path.join(os.getcwd(), "service_db")
else:
_path = os.path.join(args.FILE_DB_PATH, "service_db")
backend = FileBackend(_path, {'serializer_class': 'pickle'})
backend.create_index(Service, 'name', ephemeral=False, fields=["name"])
else:
import socket
from pymongo import MongoClient, DESCENDING
if not args.MONGODB_HOST:
raise ValueError("You must specify a MongoDB host")
_mongo_password = "" if not args.MONGODB_PASSWORD else args.MONGODB_PASSWORD
_mongo_user = "" if not args.MONGODB_USER else args.MONGODB_USER
_mongo_port = 27018 if not args.MONGODB_PORT else args.MONGODB_PORT
_mongo_uri = 'mongodb://%(user)s%(sep)s%(password)s%(arr)s%(host)s' % dict(
user=_mongo_user,
sep=":" if _mongo_user else "",
arr="@" if _mongo_user else "",
password=_mongo_password,
host=args.MONGODB_HOST
)
# PyMongo doesn't check socket timeout -> test manually
try:
sock = socket.socket()
sock.connect((args.MONGODB_HOST, _mongo_port))
except socket.error:
raise ConnectionError("Can't connect to MongoDB host")
# MongoDB
c = MongoClient(_mongo_uri, port=_mongo_port, connectTimeoutMS=5000)
# Get database and scheme
db = c["pyregister" if not args.MONGODB_DB else args.MONGODB_DB]
col = db["services" if not args.MONGODB_SCHEME else args.MONGODB_SCHEME]
# Create index
col.create_index([("name", DESCENDING)])
# create a new BlitzDB backend using a MongoDB database
backend = MongoBackend(col)
#
# Link backend to web-server property
#
backend.autocommit = True
# --------------------------------------------------------------------------
# Routes
# --------------------------------------------------------------------------
# Catalog
routes_catalog(app)
app.config['APP_DB'] = backend
# --------------------------------------------------------------------------
# Enable doc?
# --------------------------------------------------------------------------
if args.NOD_DOC is False:
Swagger(app)
app.run(host=args.IP,
port=args.PORT)
def __init__(self, geocoderCache = True, printStatus = False):
self.printStatus = printStatus
self.geocoderCache = geocoderCache
if self.geocoderCache:
self.db = FileBackend('./geo-cache')
import os
import json
from blitzdb import Document, FileBackend
class Inproceedings(Document):
pass
class Proceedings(Document):
pass
file_path = "input/dplp-2017-05-02.xml"
output_folder = 'output/'
db = FileBackend("./My-DB")
# Parses xml file via iterparse and counts number of inproceedings, proceedings and journals
def parsertest():
inproceedings = 0
proceedings = 0
journals = 0
for event, elem in ET.iterparse(file_path,
events=("start", "end"),
load_dtd=True):
if elem.tag == "inproceedings":
if event == "end" and len(list(elem)) > 0:
inproceedings += 1
elem.clear()
class TwitchNotifier(commands.Cog):
def __init__(self, bot):
self.bot: 'PixlBot' = bot
self.config = bot.config['TwitchNotifier']
self.backend = FileBackend('db')
self.backend.autocommit = True
self.bot.logger.info("Twitch notifier plugin ready")
self.uuids = []
self.online_uuids = []
self.sslcontext = ssl.SSLContext()
self.sslcontext.load_cert_chain(self.config['cert_path'],
self.config['key_path'])
self._twitch_init_()
def _twitch_init_(self):
self.bot.logger.info("Registering with Twitch...")
self.twitch = Twitch(self.config['id'], self.config['secret'])
self.twitch.authenticate_app([])
self.bot.logger.info(
f"Registering webhook endpoint {self.config['myurl']} ...")
self.hook = TwitchWebHook(self.config['myurl'],
self.config['id'],
self.config['port'],
ssl_context=self.sslcontext)
self.hook.authenticate(self.twitch)
self.bot.logger.info("Clearing all hook subscriptions...")
self.hook.unsubscribe_all(self.twitch) # Clear all subs on startup
self.hook.start()
self._register_all()
def _login_to_id(self, name: str) -> Optional[str]:
"""Returns the twitch ID for a given login name, or None if the name couldn't be resolved."""
try:
res: dict = self.twitch.get_users(logins=[name])
except TwitchBackendException as e:
self.bot.logger.error(f"Backend error fetching user! {e}")
return None
if len(res) == 0:
return None
else:
return res['data'][0]['id']
def _register_all(self):
"""Attempts to register stream_changed callbacks for all configured users."""
self.bot.logger.info("Registering callbacks for all watched users..")
users = self.backend.filter(TwitchWatchedUser,
{'twitch_name': {
"$exists": True
}})
if not users:
self.bot.logger.info("No users to watch. No callbacks registered.")
else:
for u in users:
self.bot.logger.info(f"Registering: {u['twitch_name']}")
success, uuid = self.hook.subscribe_stream_changed(
u['twitch_id'], self._cb_stream_changed)
if success and uuid:
self.uuids.append(uuid)
self.bot.logger.info(
f"{success}: registered subscription UUID: {uuid}")
else:
self.bot.logger.error(
f"{success}: failed registering subscription: {uuid}")
def _cb_stream_changed(self, uuid, data):
"""Callback for Twitch webhooks, fires on stream change event"""
self.bot.logger.debug(f"Callback data for {uuid}: {data}")
if data["type"] == "offline":
if uuid in self.online_uuids:
self.online_uuids.remove(
uuid
) # Stupid twitch sending the same damn webhook multiple times...
return
else:
self.bot.logger.debug(
f"Ignoring duplicate offline callback for {uuid}")
return
elif data["type"] == "live":
if uuid in self.online_uuids:
self.bot.logger.debug(
f"Ignoring duplicate live callback for {uuid}")
return
else:
self.online_uuids.append(uuid)
else:
self.bot.logger.error(
f"Got a callback type we can't handle: {data['type']}")
return
if uuid not in self.uuids:
self.bot.logger.error(
f"Got a callback for a UUID we're not tracking: {uuid}, my UUIDs: {self.uuids}"
)
return
try:
item = self.backend.get(TwitchWatchedUser,
{"twitch_id": data["user_id"]})
except TwitchWatchedUser.DoesNotExist:
self.bot.logger.error(
f"Got a callback for a USER we're not tracking: {data['user_id']} -> {data['user_name']}"
)
return
channel: discord.TextChannel = self.bot.get_channel(
item['notify_channel'])
width = 640
height = 360
url = data['thumbnail_url'].format(width=width, height=height)
tu = self.twitch.get_users(data['user_id'])['data'][0]
self.bot.logger.debug(tu)
embed = discord.Embed(
title=f"Now streaming {data['game_name']}",
description=data['title'],
color=discord.Color.green(),
)
embed.set_image(url=url)
embed.set_thumbnail(url=tu["profile_image_url"])
embed.set_author(name=item["twitch_name"],
url=f"https://twitch.tv/{data['user_name']}")
embed.add_field(name="Watch live at",
value=f"https://twitch.tv/{data['user_name']}")
self.bot.loop.create_task(
channel.
send( # This isn't an async function, so enqueue it manually
embed=embed))
self.bot.logger.info(
f"Successfully sent online notification for {data['user_id']}")
@cog_ext.cog_subcommand(
base="Twitchwatch",
name="add_notification",
description="Add a go live notification for Twitch",
options=[twitch_name, notify_channel, notify_text],
guild_ids=util.guilds)
async def add_notification(self, ctx: SlashContext, twitch_name: str,
notify_channel: discord.TextChannel,
notify_text: str):
twitch_id = self._login_to_id(twitch_name)
try:
self.backend.get(TwitchWatchedUser, {'twitch_name': twitch_name})
except TwitchWatchedUser.DoesNotExist:
pass
except TwitchWatchedUser.MultipleDocumentsReturned:
self.bot.logger.error(
"Multiple users returned - database inconsistent???")
return
if not twitch_id:
await ctx.send(embed=mkembed(
'error',
f"Unable to get the Twitch ID for the name {twitch_name}"))
return
await ctx.defer() # This bit can take a minute.
success, uuid = self.hook.subscribe_stream_changed(
twitch_id, self._cb_stream_changed)
if success and uuid:
self.uuids.append(uuid)
self.bot.logger.info(
f"{success}: registered subscription UUID: {uuid}")
else:
self.bot.logger.error(
f"{success}: failed registering subscription: {uuid}")
await ctx.send("Bluh, couldn't register the webhook with twitch :("
)
return
item = TwitchWatchedUser({
'twitch_name': twitch_name,
'twitch_id': twitch_id,
'discord_name': ctx.author.id,
'notify_channel': notify_channel.id,
'notify_text': notify_text,
'uuid': str(uuid)
})
self.bot.logger.debug(f"DB object dump: {item.__dict__}")
self.backend.save(item)
await ctx.send(embed=mkembed("done",
f"Notification added for {twitch_name}",
channel=notify_channel.name))
@cog_ext.cog_subcommand(
base="Twitchwatch",
name="del_notification",
description="Remove a go live notification for Twitch",
options=[twitch_name],
guild_ids=util.guilds)
async def del_notification(self, ctx: SlashContext, twitch_name: str):
try:
item = self.backend.get(TwitchWatchedUser,
{'twitch_name': twitch_name})
except TwitchWatchedUser.DoesNotExist:
await ctx.send(embed=mkembed(
"error", f"No notification exists for {twitch_name}"))
return
self.hook.unsubscribe(item['uuid'])
self.bot.logger.info(f"Removing watch {item['uuid']}: {twitch_name}")
self.backend.delete(item)
if item['uuid'] in self.uuids:
self.uuids.remove(item['uuid'])
await ctx.send(
embed=mkembed("done", f"Notification for {twitch_name} removed."))
#!/usr/bin/python
# -*- coding: utf-8 -*-
import json
from blitzdb import Document, FileBackend
backend = FileBackend(".db")
class User(Document):
pass
with open('startups.json') as f:
data = json.load(f)
for startup in data:
if 'twitter' in startup:
u = User({'twitted': False, 'name': startup.get('title'), 'twitter': startup.get('twitter'), 'user': '******' + startup.get('twitter').split('/')[-1]})
u.save(backend)
backend.commit()
def __init__(self):
self.backend = FileBackend(settings['database_location'])
def __init__(self):
"""Load backend."""
self.db = FileBackend(expanduser("~/.omesa/db"))
def __init__(self, db_path):
self.db = FileBackend(db_path)
import configparser
import json
from blitzdb import FileBackend
config_section = 'Project'
config = configparser.RawConfigParser()
config.read('miner.cfg')
project_name = config.get(config_section, 'name')
db_dir = '../projects_data/db'
array_path = '../projects_data/arrays.js'
# Подключаемся к БД
db = FileBackend('{0}/{1}'.format(db_dir, project_name))
print('Всего: {0}'.format(len(db)))
items = db.all()
sorted_items = sorted(items, key=lambda item: (item['long'], item['lat']))
ids = []
unique_items = []
for item in items:
id_ = item['id']
if id_ not in ids:
unique_items.append(item)
ids.append(id_)
# Генерируем массив
json_array = map(lambda item:
[item['lat'], item['long'], 1], unique_items)
with open(array_path, 'w') as outfile:
class eventmanager:
def __init__(self, trigger_id, jsonfilelist, triggerdir, datadir, real,
trigger_path):
#os.system('kinit -k -t /var/keytab/desgw.keytab desgw/des/[email protected]')
tstart = time.time()
if real:
self.backend = FileBackend("./realdb")
else:
self.backend = FileBackend("./testdb")
try:
thisevent = self.backend.get(Trigger, {'id': trigger_id})
print 'Found this event in desgw database...'
except Trigger.DoesNotExist:
thisevent = Trigger({
'id':
trigger_id,
'jsonfilelist':
jsonfilelist,
'triggerpath':
triggerdir,
'mapspath':
datadir,
'jobids': [
(0, 'jsonfile_corresponding_to_jobid.json'),
],
})
print 'Database entry created!'
self.trigger_id = trigger_id
self.trigger_path = trigger_path
self.backend.save(thisevent)
self.backend.commit()
with open(os.path.join(triggerdir, "strategy.yaml"), "r") as f:
self.config = yaml.safe_load(f)
self.filterobslist = np.array(self.config['exposure_filter'],
dtype='str')
self.strategydict = {}
for f in np.unique(self.filterobslist):
self.strategydict[f] = len(
self.filterobslist[self.filterobslist == f])
self.connection = ea.connect(DATABASE)
self.cursor = self.connection.cursor()
self.jsonfilelist = jsonfilelist
print self.jsonfilelist
if hardjson:
self.jsonfilelist = hj
self.trigger_id = trigger_id
self.datadir = datadir
self.triggerdir = triggerdir
self.processingdir = os.path.join(self.triggerdir, 'PROCESSING')
if not os.path.exists(self.processingdir):
os.makedirs(self.processingdir)
dire = './processing/' + trigger_id + '/'
if not os.path.exists(dire):
os.makedirs(dire)
with open(os.path.join(triggerdir, "strategy.yaml"), "r") as f:
self.strategy = yaml.safe_load(f)
with open("jobmanager.yaml", "r") as g:
self.jmconfig = yaml.safe_load(g)
q1 = "select expnum,nite,mjd_obs,telra,teldec,band,exptime,propid,obstype,object from exposure where " \
"nite>20130828 and nite<20150101 and expnum<300000 and obstype='object' order by expnum" # y1 images
self.connection.query_and_save(q1, './processing/exposuresY1.tab')
q2 = "select expnum,nite,mjd_obs,radeg,decdeg,band,exptime,propid,obstype,object from prod.exposure where " \
"nite>20150901 and obstype='object' order by expnum" # y2 and later
self.connection.query_and_save(q2, './processing/exposuresCurrent.tab')
os.system(
'cat ./processing/exposuresY1.tab ./processing/exposuresCurrent.tab > ./processing/exposures.list'
)
self.submit_all_jsons_for_sejobs(
) #preps all DES images that already exist
tfin = time.time()
print 'TOTAL SE JOBS TIME', tfin - tstart
#sys.exit()
self.monitor_images_from_mountain(
) #A loop that waits for images off mountain and submits for processing
def submit_all_jsons_for_sejobs(self):
obsStartTime = self.getDatetimeOfFirstJson(
self.jsonfilelist[0]) # THIS IS A DATETIME OBJ
currentTime = dt.utcnow()
print '***** The current time is UTC', currentTime, '*****'
delt = obsStartTime - currentTime
timedelta = td(days=delt.days,
seconds=delt.seconds).total_seconds() / 3600.
print '***** The time delta is ', timedelta, 'hours *****'
# if timedelta > np.pi:
sejob_timecushion = self.jmconfig["sejob_timecushion"]
if timedelta > sejob_timecushion:
for jsonfile in self.jsonfilelist:
print 'json', jsonfile
try: #check if this json file is already in the submitted preprocessing database
thisjson = self.backend.get(
preprocessing,
{'jsonfilename': os.path.join(self.datadir, jsonfile)})
print 'Found this json in desgw database...'
except preprocessing.DoesNotExist: #do submission and then add to database
print 'cd diffimg-proc; ./SEMaker_RADEC.sh ' + os.path.join(
self.datadir, jsonfile)
os.chdir("diffimg-proc")
out = os.popen(
'./SEMaker_RADEC.sh ' +
os.path.join(self.datadir, jsonfile)).read()
#out = os.popen('ls').read()
os.chdir("..")
print out
if 'non-zero exit status' in out:
dt.sendEmailSubject(
self.trigger_id,
'Error in creating dag for .json: ' + out)
else:
for o in out.split('\n'):
if 'file://' in o:
dagfile = o.split('/')[-1]
self.dagfile = os.path.join(
self.processingdir,
jsonfile.split('/')[-1].split('.')[0] +
'_' + dagfile)
os.system('cp diffimg-proc/' + dagfile + ' ' +
self.dagfile)
jobsubmitline = copy(o)
print self.dagfile
print 'source /cvmfs/fermilab.opensciencegrid.org/products/common/etc/setup; setup jobsub_client; jobsub_submit_dag -G des --role=DESGW file://' + self.dagfile
out = os.popen(
'source /cvmfs/fermilab.opensciencegrid.org/products/common/etc/setup; setup jobsub_client; '
'jobsub_submit_dag -G des --role=DESGW file://' +
self.dagfile).read()
print out
if 'non-zero exit status' in out:
dt.sendEmailSubject(
self.trigger_id,
'Error in submitting .json for preprocessing: ' +
out)
else:
if doimmediateremove:
for o in out.split('\n'):
if 'Use job id' in o:
jobid = o.split()[3]
out = os.popen(
'source /cvmfs/fermilab.opensciencegrid.org/products/common/etc/setup; setup jobsub_client; '
'jobsub_rm --jobid=' + jobid +
' --group=des --role=DESGW').read()
print out
thisjson = preprocessing({
'jsonfilename':
os.path.join(self.datadir, jsonfile),
'jobid':
jobid,
'dagfile':
self.dagfile,
'status':
'Submitted'
})
self.backend.save(thisjson)
self.backend.commit()
print 'saved'
#raw_input()
#runProcessingIfNotAlready(image, self.backend)
#sys.exit()
print 'Finished submitting minidagmaker with all json files'
#sys.exit()
#raw_input()
# Loop queries for images from mountain and submits them
# Need to add complexity that monitors filter strategy and waits for entire groups of images to be co-added
def monitor_images_from_mountain(self):
#NEED TO ADD COADD LOGIC USING STRATEGY FROM CONFIG
exposure_filter = np.array(self.strategy['exposure_filter'],
dtype='str')
uniquefilts = np.unique(self.strategy['exposure_filter'])
filterstrategy = {}
for f in uniquefilts:
filterstrategy[f] = len(exposure_filter[exposure_filter == f])
print 'filter strategy dictionary ', filterstrategy
starttime = time.time()
pptime = time.time()
keepgoing = True
index = -1
submission_counter = 0
maxsub = 10000
postprocessingtime = 10 #every half hour fire off Tim's code for post-processing
while keepgoing:
#os.system('kinit -k -t /var/keytab/desgw.keytab desgw/des/[email protected]')
index += 1
newfireds = []
if time.time() - starttime > 50000:
keepgoing = False
continue
ofile = open(os.path.join(self.triggerdir, 'latestquery.txt'), 'w')
ofile.write(
"--------------------------------------------------------------------------------------------------\n"
)
ofile.write(
"EXPNUM\tNITE\tBAND\tEXPTIME\tRADEG\t DECDEG\tPROPID\tOBJECT\n"
)
ofile.write(
"--------------------------------------------------------------------------------------------------\n"
)
print "--------------------------------------------------------------------------------------------------"
print "EXPNUM\tNITE\tBAND\tEXPTIME\tRADEG\t DECDEG\tPROPID\tOBJECT"
print "--------------------------------------------------------------------------------------------------"
query = "SELECT expnum,nite,band,exptime,radeg,decdeg,propid,object FROM prod.exposure@desoper WHERE " \
"expnum > 475900 and propid=" + propid + "and obstype='object' ORDER BY expnum" # latest
self.cursor.execute(query)
for s in self.cursor:
ofile.write(
str(s[0]) + "\t" + str(s[1]) + "\t" + str(s[2]) + "\t" +
str(s[3]) + "\t" + str(s[4]) + "\t" + str(s[5]) + "\t" +
str(s[6]) + "\t" + str(s[7]) + '\n')
print str(s[0]) + "\t" + str(s[1]) + "\t" + str(
s[2]) + "\t" + str(s[3]) + "\t" + str(s[4]) + "\t" + str(
s[5]) + "\t" + str(s[6]) + "\t" + str(s[7])
if not 'DESGW' in str(s[7]): continue
#print 'exptime',float(s[3])
if not float(s[3]) > 29.:
continue #exposure must be longer than 30 seconds
expnum = str(s[0])
nite = str(s[1])
band = str(s[2])
exptime = str(s[3])
#FIRST CHECK HERE THAT THE EXPOSURE NUMBER ISNT ALREADY IN THE DATABASE
try:
exposure = self.backend.get(exposures, {'expnum': expnum})
print 'Found this exposure in desgw database...'
# print exposure.attributes
# if expnum == 506432:
# sys.exit()
# self.backend.delete(exposure)
# self.backend.commit()
# exposure = self.backend.get(exposures, {'expnum': expnum})
except exposures.DoesNotExist: # add to database
#runProcessingIfNotAlready(image,self.backend)
print './diffimg-proc/getTiling.sh ' + expnum
res = os.popen('./diffimg-proc/getTiling.sh ' +
expnum).readlines()
print res
#sys.exit()
field, tiling = res[-2], res[-1]
#print 'field_tiling',field_tiling
hexnite = field.strip() + '_' + tiling.strip() + '_' + str(
nite)
#print hexnite
#sys.exit()
#print 'hexnite',hexnite
print 'Creating exposure in database...', hexnite
#raw_input()
if '--' in hexnite:
print 'found bad example'
#raw_input()
exposure = exposures({
'expnum': expnum,
'nite': nite,
'field': field,
'tiling': tiling,
'hexnite': hexnite,
'band': band,
'jobid': np.nan,
'exptime': exptime,
'status': 'Awaiting additional exposures',
'triggerid': self.trigger_id,
'object': str(s[7])
})
self.backend.save(exposure)
self.backend.commit()
hexnite = exposure.hexnite
print 'hexnite', hexnite
if '--' in hexnite:
print exposure.attributes
#raw_input()
#raw_input()
#sys.exit()
try:
hex = self.backend.get(hexes, {'hexnite': hexnite})
#self.backend.delete(hex)
#self.backend.commit()
#hex = self.backend.get(hexes, {'hexnite': hexnite})
#print 'Found this hex in desgw database...'
except hexes.DoesNotExist:
hex = hexes({
'hexnite':
hexnite,
'strategy':
self.strategy['exposure_filter'],
'num_target_g':
len(exposure_filter[exposure_filter == 'g']),
'num_target_r':
len(exposure_filter[exposure_filter == 'r']),
'num_target_i':
len(exposure_filter[exposure_filter == 'i']),
'num_target_z':
len(exposure_filter[exposure_filter == 'z']),
'observed_g': [],
'observed_r': [],
'observed_i': [],
'observed_z': [],
'exposures': [],
'status':
'Awaiting additional exposures',
'dagfile':
None,
})
self.backend.save(hex)
self.backend.commit()
print hex.attributes
print 'created new hex'
#raw_input()
if hex.status == 'Submitted for processing':
print 'This hex has already been submitted for processing'
continue
# if '--' in hexnite:
# print hex.attributes
# raw_input()
# if hex.status == 'Submitted for processing':
# print 'Hex ',hexnite,' band',band,'exposure',expnum,'has already been submitted for processing'
# #raw_input()
# continue
if band == 'g':
if not expnum in hex.observed_g:
hex.observed_g.append(expnum)
hex.exposures.append(expnum)
if band == 'r':
if not expnum in hex.observed_r:
hex.observed_r.append(expnum)
hex.exposures.append(expnum)
if band == 'i':
if not expnum in hex.observed_i:
hex.observed_i.append(expnum)
hex.exposures.append(expnum)
if band == 'z':
if not expnum in hex.observed_z:
hex.observed_z.append(expnum)
hex.exposures.append(expnum)
self.backend.save(hex)
self.backend.commit()
print hex.attributes
didwork = False
if len(hex.observed_g) == hex.num_target_g:
if len(hex.observed_r) == hex.num_target_r:
if len(hex.observed_i) == hex.num_target_i:
if len(hex.observed_z) == hex.num_target_z:
print 'All exposures in strategy satisfied! '
#raw_input()
submissionPassed = True
for target, exps in zip([
hex.num_target_g, hex.num_target_r,
hex.num_target_i, hex.num_target_z
], [
hex.observed_g, hex.observed_r,
hex.observed_i, hex.observed_z
]):
if target == 0: continue
exposurestring = ''
logstring = ''
for ex in exps:
exposurestring += ex + ' '
logstring += ex + '_'
print 'cd diffimg-proc; source DAGMaker.sh ' + exposurestring
os.chdir("diffimg-proc")
#out = os.popen('ls').read()
out = os.popen('./DAGMaker.sh ' +
exposurestring).read()
os.chdir("..")
print out
f = open(
os.path.join(
self.processingdir,
logstring + hexnite + '.log'), 'w')
f.write(out)
f.close()
tt = time.time()
if not 'To submit this DAG do' in out:
dt.sendEmailSubject(
self.trigger_id,
'Error in creating dag for desgw hex: '
+ out)
submissionPassed = False
else:
for o in out.split('\n'):
if 'file://' in o:
dagfile = o.split('/')[-1]
self.dagfile = os.path.join(
self.processingdir,
logstring + 'job.dag')
os.system('cp diffimg-proc/' +
dagfile + ' ' +
self.dagfile)
print self.dagfile
print 'source /cvmfs/fermilab.opensciencegrid.org/products/common/etc/setup; setup jobsub_client; jobsub_submit_dag -G des --role=DESGW file://' + self.dagfile
out = os.popen(
'source /cvmfs/fermilab.opensciencegrid.org/products/common/etc/setup; setup jobsub_client; '
'jobsub_submit_dag -G des --role=DESGW file://'
+ self.dagfile).read()
print out
if 'non-zero exit status' in out:
dt.sendEmailSubject(
self.trigger_id,
'Error in submitting hex dag for processing: '
+ out)
submissionPassed = False
else:
if doimmediateremove:
for o in out.split('\n'):
if 'Use job id' in o:
jobid = o.split()[3]
out = os.popen(
'source /cvmfs/fermilab.opensciencegrid.org/products/common/etc/setup; setup jobsub_client; '
'jobsub_rm --jobid=' + jobid +
' --group=des --role=DESGW'
).read()
print out
ttt = time.time()
#print 'TOTAL JOBSUB FOR A SINGLE DESGW IMAGE',ttt-tt
#sys.exit()
#raw_input()
if submissionPassed:
hex.status = 'Submitted for processing'
hex.dagfile = self.dagfile
self.backend.save(hex)
self.backend.commit()
for expn in hex.exposures:
print expn, 'updated in database to Submitted For Processing'
exp = self.backend.get(
exposures, {'expnum': expn})
exp.status = 'Submitted for processing'
self.backend.save(exp)
self.backend.commit()
didwork = True
print 'didwork', didwork
print 'dagfile', self.dagfile
#raw_input()
if not didwork:
print 'Could not find all images in strategy for this hex... Added hex', hexnite,' to database ' \
'and will continue waiting...'
#raw_input()
#HERE YOU NEED TO ADD TO HEXSTRATEGYDICT DATABASE
if time.time(
) - pptime > postprocessingtime: #happens every 30 minutes or so...
pptime = time.time()
print '***** Firing post processing script *****'
#sys.exit()
self.submit_post_processing()
#sys.exit()
print 'Waiting 10s to check from mountain...'
#sys.exit()
time.sleep(10) #looping over checking the mountain top
# cfiles = os.listdir(os.path.join(trigger_path,trigger_id,'candidates'))
# for f in cfiles:
# if f.split('.')[-1] == 'npz':
# cp.makeNewPage(f)
def submit_post_processing(self):
firedlist = open('./processing/firedlist.txt', 'r')
fl = firedlist.readlines()
firedlist.close()
print fl
fl = ['475914', '475915', '475916', '482859', '482860', '482861']
expnumlist = ''
for f in fl:
expnumlist += f.strip() + ' '
print 'FIRING TIMs CODE'
gwpostdir = os.environ['GWPOST_DIR']
print 'source ' + os.path.join(gwpostdir, 'diffimg_setup.sh') + '; \
python ' +os.path.join(gwpostdir,'postproc.py')\
+' --expnums ' + expnumlist\
+ ' --outputdir ' + os.path.join(self.trigger_path,self.trigger_id,'candidates')\
+ ' --triggerid '+self.trigger_id+' --season 46 --ups True'
# os.system('source ' + os.path.join(gwpostdir, 'diffimg_setup.sh') + '; \
# python '+os.path.join(gwpostdir,'postproc.py')\
# +' --expnums ' + expnumlist\
# + ' --outputdir ' + os.path.join(trigger_path,trigger_id,'candidates')\
# + ' --triggerid '+trigger_id+' --season 46 --ups True' )
#pid = os.spawnlp(os.P_WAIT, "source", os.path.join(gwpostdir, 'diffimg_setup.sh'))
args = ['ssh -t [email protected] "source '+ os.path.join(gwpostdir, 'mi_setup.sh')+'; '+
'yes | python '+os.path.join(gwpostdir,'postproc.py')\
+' --expnums ' + expnumlist\
+ ' --outputdir ' + os.path.join(self.trigger_path,self.trigger_id,'candidates')\
+ ' --triggerid '+self.trigger_id+' --season 46 --ups True"'
]
print args
#p = subprocess.Popen(args,stdout=PIPE, stderr=PIPE,shell=True)
#print p.communicate()
#p = subprocess.Popen(args,stdin=None, stdout=None, stderr=None, close_fds=True,shell=True)
return
def getDatetimeOfFirstJson(self, jsonstring):
js = jsonstring.split('UTC')[1] #-2015-12-27-3:2:00.json
#date_object = dt.strptime(js, '-%Y-%m-%d-%H_%M_%S.json')
date_object = dt.strptime(js, '-%Y-%m-%d-%H_%M_%S-test.json')
print '***** Datetime of first observation UTC', date_object, '*****'
return date_object
def sortHexes(self):
pass
def __init__(self):
self.jav_db = FileBackend('jav_manager.db')
def __init__(self, bot):
self.bot = bot
self.cfg = PluginConfig(self)
self.db = FileBackend(self.cfg.get('main_db'))
mtt = MessageRetargeter(bot)
self.msg = mtt.msg
class Movie(Document):
pass
the_godfather = Movie({'name': 'The Godfather', 'year': 1972, 'pk': 1})
marlon_brando = Actor({'name': 'Marlon Brando', 'pk': 2})
al_pacino = Actor({'name': 'Al Pacino', 'pk': 3})
print("Backend")
from blitzdb import FileBackend
loc = "./my-db"
backend = FileBackend(loc)
print("Created Backend", loc)
the_godfather.save(backend)
marlon_brando.save(backend)
al_pacino.save(backend)
print("Backend Saved and committed:", os.path.realpath(os.curdir))
# print(backend.get(Movie,{'pk':1}))
# or...
the_godfather = backend.get(Movie, {'name': 'The Godfather'})
print("the_godfather", the_godfather)
the_godfather.cast = {
def __init__(self, trigger_id, jsonfilelist, triggerdir, datadir, real, trigger_path):
#os.system('kinit -k -t /var/keytab/desgw.keytab desgw/des/[email protected]')
tstart = time.time()
if real:
self.backend = FileBackend("./realdb")
else:
self.backend = FileBackend("./testdb")
try:
self.thisevent = self.backend.get(Trigger, {'id': trigger_id})
print 'Found this event in desgw database...'
except Trigger.DoesNotExist:
self.thisevent = Trigger({
'id':trigger_id,
'jsonfilelist':jsonfilelist,
'triggerpath':triggerdir,
'mapspath':datadir,
'jobids':[
(0,'jsonfile_corresponding_to_jobid.json'),
],
'postprocint': 0
})
print 'Database entry created!'
self.trigger_id = trigger_id
self.trigger_path = trigger_path
self.backend.save(self.thisevent)
self.backend.commit()
with open(os.path.join(triggerdir,"strategy.yaml"), "r") as f:
self.config = yaml.safe_load(f);
self.filterobslist = np.array(self.config['exposure_filter'],dtype='str')
self.strategydict = {}
for f in np.unique(self.filterobslist):
self.strategydict[f] = len(self.filterobslist[self.filterobslist == f])
self.connection = ea.connect(DATABASE)
self.cursor = self.connection.cursor()
self.jsonfilelist = jsonfilelist
print self.jsonfilelist
if hardjson:
self.jsonfilelist = hj
#self.pp = subprocess.Popen('echo starting',stdout=PIPE, stderr=PIPE,shell=True)
self.trigger_id = trigger_id
self.datadir = datadir
self.triggerdir = triggerdir
self.processingdir = os.path.join(self.triggerdir,'PROCESSING')
if not os.path.exists(self.processingdir):
os.makedirs(self.processingdir)
dire = './processing/' + trigger_id + '/'
if not os.path.exists(dire):
os.makedirs(dire)
with open(os.path.join(triggerdir, "strategy.yaml"), "r") as f:
self.strategy = yaml.safe_load(f)
with open("jobmanager.yaml", "r") as g:
self.jmconfig = yaml.safe_load(g);
q1 = "select expnum,nite,mjd_obs,telra,teldec,band,exptime,propid,obstype,object from exposure where " \
"nite>20130828 and nite<20150101 and expnum<300000 and obstype='object' order by expnum" # y1 images
self.connection.query_and_save(q1, './processing/exposuresY1.tab')
q2 = "select expnum,nite,mjd_obs,radeg,decdeg,band,exptime,propid,obstype,object from prod.exposure where " \
"nite>20150901 and obstype='object' order by expnum" # y2 and later
self.connection.query_and_save(q2, './processing/exposuresCurrent.tab')
os.system('cat ./processing/exposuresY1.tab ./processing/exposuresCurrent.tab > ./processing/exposures.list')
#self.submit_post_processing()
self.submit_all_jsons_for_sejobs()#preps all DES images that already exist
tfin = time.time()
print 'TOTAL SE JOBS TIME', tfin - tstart
#sys.exit()
self.monitor_images_from_mountain()#A loop that waits for images off mountain and submits for processing