def __init__(self,
state_names,
state_dims,
sequence_dim,
match_dim,
state_transformer=None,
sequence_transformer=None,
energy_computer=None,
**kwargs):
super(SequenceContentAttention, self).__init__(**kwargs)
self.state_names = state_names
self.state_dims = state_dims
self.sequence_dim = sequence_dim
self.match_dim = match_dim
self.state_transformer = state_transformer
self.state_transformers = Parallel(input_names=state_names,
prototype=state_transformer,
name="state_trans")
if not sequence_transformer:
sequence_transformer = MLP([Identity()], name="seq_trans")
if not energy_computer:
energy_computer = EnergyComputer(name="energy_comp")
self.sequence_transformer = sequence_transformer
self.energy_computer = energy_computer
self.children = [
self.state_transformers, sequence_transformer, energy_computer
]
def __init__(self, area_transform, patch_transform, response_transform,
n_spatial_dims, batch_normalize, whatwhere_interaction="additive",
**kwargs):
super(Merger, self).__init__(**kwargs)
self.patch_transform = patch_transform
self.area_transform = area_transform
self.whatwhere_interaction = whatwhere_interaction
self.response_merge = Parallel(
input_names="area patch".split(),
input_dims=[area_transform.brick.output_dim,
patch_transform.brick.output_dim],
output_dims=2*[response_transform.brick.input_dim],
prototype=Linear(use_bias=False),
child_prefix="response_merge")
self.response_merge_activation = NormalizedActivation(
shape=[response_transform.brick.input_dim],
name="response_merge_activation",
batch_normalize=batch_normalize)
self.response_transform = response_transform
self.children = [self.response_merge_activation,
self.response_merge,
patch_transform.brick,
area_transform.brick,
response_transform.brick]
def __init__(self, **kwargs):
super(TreeAttention, self).__init__(**kwargs)
state_transformer = Linear()
self.state_transformers = Parallel(input_names=self.state_names,
prototype=state_transformer,
name="state_trans")
self.parent1_transformer = Linear(name="parent1_trans")
self.parent2_transformer = Linear(name="parent2_trans")
self.children = [self.state_transformers,
self.parent1_transformer,
self.parent2_transformer]
def __init__(self, stack_dim=500, **kwargs):
"""Sole constructor.
Args:
stack_dim (int): Size of vectors on the stack.
"""
super(PushDownSequenceContentAttention, self).__init__(**kwargs)
self.stack_dim = stack_dim
self.max_stack_depth = 25
self.stack_op_names = self.state_names + ['weighted_averages']
self.stack_pop_transformer = MLP(activations=[Logistic()], dims=None)
self.stack_pop_transformers = Parallel(
input_names=self.stack_op_names,
prototype=self.stack_pop_transformer,
name="stack_pop")
self.stack_push_transformer = MLP(activations=[Logistic()], dims=None)
self.stack_push_transformers = Parallel(
input_names=self.stack_op_names,
prototype=self.stack_push_transformer,
name="stack_push")
self.stack_input_transformer = Linear()
self.stack_input_transformers = Parallel(
input_names=self.stack_op_names,
prototype=self.stack_input_transformer,
name="stack_input")
self.children.append(self.stack_pop_transformers)
self.children.append(self.stack_push_transformers)
self.children.append(self.stack_input_transformers)
def __init__(self,
state_names,
state_dims,
sequence_dim,
match_dim,
state_transformer=None,
sequence_transformer=None,
energy_computer=None,
**kwargs):
super(SequenceContentAttention, self).__init__(**kwargs)
update_instance(self, locals())
self.state_transformers = Parallel(channel_names=state_names,
prototype=self.state_transformer,
name="state_trans")
if not self.sequence_transformer:
self.sequence_transformer = MLP([Identity()], name="seq_trans")
if not self.energy_computer:
self.energy_computer = MLP([Identity()], name="energy_comp")
self.children = [
self.state_transformers, self.sequence_transformer,
self.energy_computer
]
def __init__(self, state_names, state_dims, sequence_dim, match_dim,
state_transformer=None, sequence_transformer=None,
energy_computer=None, weights_init=None, biases_init=None,
**kwargs):
super(SequenceContentAttention, self).__init__(**kwargs)
update_instance(self, locals())
self.state_transformers = Parallel(channel_names=state_names,
prototype=self.state_transformer,
name="state_trans")
if not self.sequence_transformer:
self.sequence_transformer = MLP([Identity()], name="seq_trans")
if not self.energy_computer:
self.energy_computer = MLP([Identity()], name="energy_comp")
self.children = [self.state_transformers, self.sequence_transformer,
self.energy_computer]
class Merger(Initializable):
def __init__(self, area_transform, patch_transform, response_transform,
n_spatial_dims, batch_normalize, whatwhere_interaction="additive",
**kwargs):
super(Merger, self).__init__(**kwargs)
self.patch_transform = patch_transform
self.area_transform = area_transform
self.whatwhere_interaction = whatwhere_interaction
self.response_merge = Parallel(
input_names="area patch".split(),
input_dims=[area_transform.brick.output_dim,
patch_transform.brick.output_dim],
output_dims=2*[response_transform.brick.input_dim],
prototype=Linear(use_bias=False),
child_prefix="response_merge")
self.response_merge_activation = NormalizedActivation(
shape=[response_transform.brick.input_dim],
name="response_merge_activation",
batch_normalize=batch_normalize)
self.response_transform = response_transform
self.children = [self.response_merge_activation,
self.response_merge,
patch_transform.brick,
area_transform.brick,
response_transform.brick]
@application(inputs="patch location scale".split(),
outputs=['response'])
def apply(self, patch, location, scale):
# don't backpropagate through these to avoid the model using
# the location/scale as merely additional hidden units
#location, scale = list(map(theano.gradient.disconnected_grad, (location, scale)))
patch = self.patch_transform(patch)
area = self.area_transform(T.concatenate([location, scale], axis=1))
parts = self.response_merge.apply(area, patch)
if self.whatwhere_interaction == "additive":
response = sum(parts)
elif self.whatwhere_interaction == "multiplicative":
response = reduce(operator.mul, parts)
response = self.response_merge_activation.apply(response)
response = self.response_transform(response)
return response
def __init__(self, match_dim, state_transformer=None,
attended_transformer=None, energy_computer=None, **kwargs):
super(SequenceContentAttention, self).__init__(**kwargs)
self.match_dim = match_dim
self.state_transformer = state_transformer
self.state_transformers = Parallel(input_names=self.state_names,
prototype=state_transformer,
name="state_trans")
if not attended_transformer:
attended_transformer = Linear(name="preprocess")
if not energy_computer:
energy_computer = ShallowEnergyComputer(name="energy_comp")
self.attended_transformer = attended_transformer
self.energy_computer = energy_computer
self.children = [self.state_transformers, attended_transformer,
energy_computer]
def __init__(self, match_dim, conv_n, conv_num_filters=1,
state_transformer=None,
attended_transformer=None, energy_computer=None,
prior=None, energy_normalizer=None, **kwargs):
super(SequenceContentAndConvAttention, self).__init__(**kwargs)
if not state_transformer:
state_transformer = Linear(use_bias=False)
self.match_dim = match_dim
self.state_transformer = state_transformer
self.state_transformers = Parallel(input_names=self.state_names,
prototype=state_transformer,
name="state_trans")
if not attended_transformer:
# Only this contributor to the match vector
# is allowed to have biases
attended_transformer = Linear(name="preprocess")
if not energy_normalizer:
energy_normalizer = 'softmax'
self.energy_normalizer = energy_normalizer
if not energy_computer:
energy_computer = ShallowEnergyComputer(
name="energy_comp",
use_bias=self.energy_normalizer != 'softmax')
self.filter_handler = Linear(name="handler", use_bias=False)
self.attended_transformer = attended_transformer
self.energy_computer = energy_computer
if not prior:
prior = dict(type='expanding', initial_begin=0, initial_end=10000,
min_speed=0, max_speed=0)
self.prior = prior
self.conv_n = conv_n
self.conv_num_filters = conv_num_filters
self.conv = Conv1D(conv_num_filters, 2 * conv_n + 1)
self.children = [self.state_transformers, self.attended_transformer,
self.energy_computer, self.filter_handler, self.conv]
def __init__(self, match_dim, state_transformer=None,
attended_transformer=None, energy_computer=None, **kwargs):
if not state_transformer:
state_transformer = Linear(use_bias=False)
self.match_dim = match_dim
self.state_transformer = state_transformer
self.state_transformers = Parallel(input_names=kwargs['state_names'],
prototype=state_transformer,
name="state_trans")
if not attended_transformer:
attended_transformer = Linear(name="preprocess")
if not energy_computer:
energy_computer = ShallowEnergyComputer(name="energy_comp")
self.attended_transformer = attended_transformer
self.energy_computer = energy_computer
children = [self.state_transformers, attended_transformer,
energy_computer] + kwargs.get('children', [])
super(SequenceContentAttention, self).__init__(children=children,
**kwargs)
class SequenceContentAndConvAttention(GenericSequenceAttention, Initializable):
@lazy()
def __init__(self, match_dim, conv_n, conv_num_filters=1,
state_transformer=None,
attended_transformer=None, energy_computer=None,
prior=None, energy_normalizer=None, **kwargs):
super(SequenceContentAndConvAttention, self).__init__(**kwargs)
if not state_transformer:
state_transformer = Linear(use_bias=False)
self.match_dim = match_dim
self.state_transformer = state_transformer
self.state_transformers = Parallel(input_names=self.state_names,
prototype=state_transformer,
name="state_trans")
if not attended_transformer:
# Only this contributor to the match vector
# is allowed to have biases
attended_transformer = Linear(name="preprocess")
if not energy_normalizer:
energy_normalizer = 'softmax'
self.energy_normalizer = energy_normalizer
if not energy_computer:
energy_computer = ShallowEnergyComputer(
name="energy_comp",
use_bias=self.energy_normalizer != 'softmax')
self.filter_handler = Linear(name="handler", use_bias=False)
self.attended_transformer = attended_transformer
self.energy_computer = energy_computer
if not prior:
prior = dict(type='expanding', initial_begin=0, initial_end=10000,
min_speed=0, max_speed=0)
self.prior = prior
self.conv_n = conv_n
self.conv_num_filters = conv_num_filters
self.conv = Conv1D(conv_num_filters, 2 * conv_n + 1)
self.children = [self.state_transformers, self.attended_transformer,
self.energy_computer, self.filter_handler, self.conv]
def _push_allocation_config(self):
self.state_transformers.input_dims = self.state_dims
self.state_transformers.output_dims = [self.match_dim
for name in self.state_names]
self.attended_transformer.input_dim = self.attended_dim
self.attended_transformer.output_dim = self.match_dim
self.energy_computer.input_dim = self.match_dim
self.energy_computer.output_dim = 1
self.filter_handler.input_dim = self.conv_num_filters
self.filter_handler.output_dim = self.match_dim
@application
def compute_energies(self, attended, preprocessed_attended,
previous_weights, states):
if not preprocessed_attended:
preprocessed_attended = self.preprocess(attended)
transformed_states = self.state_transformers.apply(as_dict=True,
**states)
# Broadcasting of transformed states should be done automatically
match_vectors = sum(transformed_states.values(),
preprocessed_attended)
conv_result = self.conv.apply(previous_weights)
match_vectors += self.filter_handler.apply(
conv_result[:, :, self.conv_n:-self.conv_n]
.dimshuffle(0, 2, 1)).dimshuffle(1, 0, 2)
energies = self.energy_computer.apply(match_vectors).reshape(
match_vectors.shape[:-1], ndim=match_vectors.ndim - 1)
return energies
@staticmethod
def mask_row(offset, length, empty_row):
return tensor.set_subtensor(empty_row[offset:offset+length], 1)
@application(outputs=['weighted_averages', 'weights', 'energies', 'step'])
def take_glimpses(self, attended, preprocessed_attended=None,
attended_mask=None, weights=None, step=None, **states):
# Cut the considered window.
p = self.prior
length = attended.shape[0]
prior_type = p.get('type', 'expanding')
if prior_type=='expanding':
begin = p['initial_begin'] + step[0] * p['min_speed']
end = p['initial_end'] + step[0] * p['max_speed']
begin = tensor.maximum(0, tensor.minimum(length - 1, begin))
end = tensor.maximum(0, tensor.minimum(length, end))
additional_mask = None
elif prior_type.startswith('window_around'):
#check whether we want the mean or median!
if prior_type == 'window_around_mean':
position_in_attended = tensor.arange(length, dtype=floatX)[None, :]
expected_last_source_pos = (weights * position_in_attended).sum(axis=1)
elif prior_type == 'window_around_median':
ali_to_05 = tensor.extra_ops.cumsum(weights, axis=1) - 0.5
ali_to_05 = (ali_to_05>=0)
ali_median_pos = ali_to_05[:,1:] - ali_to_05[:,:-1]
expected_last_source_pos = tensor.argmax(ali_median_pos, axis=1)
expected_last_source_pos = theano.gradient.disconnected_grad(
expected_last_source_pos)
else:
raise ValueError
#the window taken around each element
begins = tensor.floor(expected_last_source_pos - p['before'])
ends = tensor.ceil(expected_last_source_pos + p['after'])
#the global window to optimize computations
begin = tensor.maximum(0, begins.min()).astype('int64')
end = tensor.minimum(length, ends.max()).astype('int64')
#the new mask, already cut to begin:end
position_in_attended_cut = tensor.arange(
begin * 1., end * 1., 1., dtype=floatX)[None, :]
additional_mask = ((position_in_attended_cut > begins[:,None]) *
(position_in_attended_cut < ends[:,None]))
else:
raise Exception("Unknown prior type: %s", prior_type)
begin = tensor.floor(begin).astype('int64')
end = tensor.ceil(end).astype('int64')
attended_cut = attended[begin:end]
preprocessed_attended_cut = (preprocessed_attended[begin:end]
if preprocessed_attended else None)
attended_mask_cut = (
(attended_mask[begin:end] if attended_mask else None)
* (additional_mask.T if additional_mask else 1))
weights_cut = weights[:, begin:end]
# Call
energies_cut = self.compute_energies(attended_cut, preprocessed_attended_cut,
weights_cut, states)
weights_cut = self.compute_weights(energies_cut, attended_mask_cut)
weighted_averages = self.compute_weighted_averages(weights_cut, attended_cut)
# Paste
new_weights = new_energies = tensor.zeros_like(weights.T)
new_weights = tensor.set_subtensor(new_weights[begin:end],
weights_cut)
new_energies = tensor.set_subtensor(new_energies[begin:end],
energies_cut)
return weighted_averages, new_weights.T, new_energies.T, step + 1
@take_glimpses.property('inputs')
def take_glimpses_inputs(self):
return (['attended', 'preprocessed_attended',
'attended_mask', 'weights', 'step'] +
self.state_names)
@application
def compute_weights(self, energies, attended_mask):
if self.energy_normalizer == 'softmax':
logger.info("Using softmax attention weights normalization")
energies = energies - energies.max(axis=0)
unnormalized_weights = tensor.exp(energies)
elif self.energy_normalizer == 'logistic':
logger.info("Using smoothfocus (logistic sigm) "
"attention weights normalization")
unnormalized_weights = tensor.nnet.sigmoid(energies)
elif self.energy_normalizer == 'relu':
logger.info("Using ReLU attention weights normalization")
unnormalized_weights = tensor.maximum(energies/1000., 0.0)
else:
raise Exception("Unknown energey_normalizer: {}"
.format(self.energy_computer))
if attended_mask:
unnormalized_weights *= attended_mask
# If mask consists of all zeros use 1 as the normalization coefficient
normalization = (unnormalized_weights.sum(axis=0) +
tensor.all(1 - attended_mask, axis=0))
return unnormalized_weights / normalization
@application
def initial_glimpses(self, batch_size, attended):
return ([tensor.zeros((batch_size, self.attended_dim))]
+ 2 * [tensor.concatenate([
tensor.ones((batch_size, 1)),
tensor.zeros((batch_size, attended.shape[0] - 1))],
axis=1)]
+ [tensor.zeros((batch_size,), dtype='int64')])
@initial_glimpses.property('outputs')
def initial_glimpses_outputs(self):
return ['weight_averages', 'weights', 'energies', 'step']
@application(inputs=['attended'], outputs=['preprocessed_attended'])
def preprocess(self, attended):
return self.attended_transformer.apply(attended)
def get_dim(self, name):
if name in ['weighted_averages']:
return self.attended_dim
if name in ['weights', 'energies', 'step']:
return 0
return super(SequenceContentAndConvAttention, self).get_dim(name)
class SequenceContentAttention(GenericSequenceAttention, Initializable):
"""Attention mechanism that looks for relevant content in a sequence.
This is the attention mechanism used in [BCB]_. The idea in a nutshell:
1. The states and the sequence are transformed independently,
2. The transformed states are summed with every transformed sequence
element to obtain *match vectors*,
3. A match vector is transformed into a single number interpreted as
*energy*,
4. Energies are normalized in softmax-like fashion. The resulting
summing to one weights are called *attention weights*,
5. Weighted average of the sequence elements with attention weights
is computed.
In terms of the :class:`AbstractAttention` documentation, the sequence
is the attended. The weighted averages from 5 and the attention
weights from 4 form the set of glimpses produced by this attention
mechanism.
Parameters
----------
state_names : list of str
The names of the network states.
attended_dim : int
The dimension of the sequence elements.
match_dim : int
The dimension of the match vector.
state_transformer : :class:`.Brick`
A prototype for state transformations. If ``None``,
a linear transformation is used.
attended_transformer : :class:`.Feedforward`
The transformation to be applied to the sequence. If ``None`` an
affine transformation is used.
energy_computer : :class:`.Feedforward`
Computes energy from the match vector. If ``None``, an affine
transformations preceeded by :math:`tanh` is used.
Notes
-----
See :class:`.Initializable` for initialization parameters.
.. [BCB] Dzmitry Bahdanau, Kyunghyun Cho and Yoshua Bengio. Neural
Machine Translation by Jointly Learning to Align and Translate.
"""
@lazy(allocation=['match_dim'])
def __init__(self, match_dim, state_transformer=None,
attended_transformer=None, energy_computer=None, **kwargs):
if not state_transformer:
state_transformer = Linear(use_bias=False)
self.match_dim = match_dim
self.state_transformer = state_transformer
self.state_transformers = Parallel(input_names=kwargs['state_names'],
prototype=state_transformer,
name="state_trans")
if not attended_transformer:
attended_transformer = Linear(name="preprocess")
if not energy_computer:
energy_computer = ShallowEnergyComputer(name="energy_comp")
self.attended_transformer = attended_transformer
self.energy_computer = energy_computer
children = [self.state_transformers, attended_transformer,
energy_computer] + kwargs.get('children', [])
super(SequenceContentAttention, self).__init__(children=children,
**kwargs)
def _push_allocation_config(self):
self.state_transformers.input_dims = self.state_dims
self.state_transformers.output_dims = [self.match_dim
for name in self.state_names]
self.attended_transformer.input_dim = self.attended_dim
self.attended_transformer.output_dim = self.match_dim
self.energy_computer.input_dim = self.match_dim
self.energy_computer.output_dim = 1
@application
def compute_energies(self, attended, preprocessed_attended, states):
if not preprocessed_attended:
preprocessed_attended = self.preprocess(attended)
transformed_states = self.state_transformers.apply(as_dict=True,
**states)
# Broadcasting of transformed states should be done automatically
match_vectors = sum(transformed_states.values(),
preprocessed_attended)
energies = self.energy_computer.apply(match_vectors).reshape(
match_vectors.shape[:-1], ndim=match_vectors.ndim - 1)
return energies
@application(outputs=['weighted_averages', 'weights'])
def take_glimpses(self, attended, preprocessed_attended=None,
attended_mask=None, **states):
r"""Compute attention weights and produce glimpses.
Parameters
----------
attended : :class:`~tensor.TensorVariable`
The sequence, time is the 1-st dimension.
preprocessed_attended : :class:`~tensor.TensorVariable`
The preprocessed sequence. If ``None``, is computed by calling
:meth:`preprocess`.
attended_mask : :class:`~tensor.TensorVariable`
A 0/1 mask specifying available data. 0 means that the
corresponding sequence element is fake.
\*\*states
The states of the network.
Returns
-------
weighted_averages : :class:`~theano.Variable`
Linear combinations of sequence elements with the attention
weights.
weights : :class:`~theano.Variable`
The attention weights. The first dimension is batch, the second
is time.
"""
energies = self.compute_energies(attended, preprocessed_attended,
states)
weights = self.compute_weights(energies, attended_mask)
weighted_averages = self.compute_weighted_averages(weights, attended)
return weighted_averages, weights.T
@take_glimpses.property('inputs')
def take_glimpses_inputs(self):
return (['attended', 'preprocessed_attended', 'attended_mask'] +
self.state_names)
@application(outputs=['weighted_averages', 'weights'])
def initial_glimpses(self, batch_size, attended):
return [tensor.zeros((batch_size, self.attended_dim)),
tensor.zeros((batch_size, attended.shape[0]))]
@application(inputs=['attended'], outputs=['preprocessed_attended'])
def preprocess(self, attended):
"""Preprocess the sequence for computing attention weights.
Parameters
----------
attended : :class:`~tensor.TensorVariable`
The attended sequence, time is the 1-st dimension.
"""
return self.attended_transformer.apply(attended)
def get_dim(self, name):
if name in ['weighted_averages']:
return self.attended_dim
if name in ['weights']:
return 0
return super(SequenceContentAttention, self).get_dim(name)
class SequenceContentAttention(AbstractAttention, Initializable):
"""Attention mechanism that looks for relevant content in a sequence.
This is the attention mechanism used in [BCB]_. The idea in a nutshell:
1. The states and the sequence are transformed independently,
2. The transformed states are summed with every transformed sequence
element to obtain *match vectors*,
3. A match vector is transformed into a single number interpreted as
*energy*,
4. Energies are normalized in softmax-like fashion. The resulting
summing to one weights are called *attention weights*,
5. Linear combination of the sequence elements with attention weights
is computed.
In terms of the :class:`AbstractAttention` documentation, the sequence
is the attended. This linear combinations from 5 and the attention
weights from 4 form the set of glimpses produced by this attention
mechanism.
Parameters
----------
state_names : list of str
The names of the network states.
sequence_dim : int
The dimension of the sequence elements.
match_dim : int
The dimension of the match vector.
state_transformer : :class:`.Brick`
A prototype for state transformations. If ``None``, the default
transformation from :class:`.Parallel` is used.
sequence_transformer : :class:`.Feedforward`
The transformation to be applied to the sequence. If ``None`` an
affine transformation is used.
energy_computer : :class:`.Feedforward`
Computes energy from the match vector. If ``None``, an affine
transformations preceeded by :math:`tanh` is used.
Notes
-----
See :class:`.Initializable` for initialization parameters.
.. [BCB] Dzmitry Bahdanau, Kyunghyun Cho and Yoshua Bengio. Neural
Machine Translation by Jointly Learning to Align and Translate.
"""
@lazy
def __init__(self, state_names, state_dims, sequence_dim, match_dim,
state_transformer=None, sequence_transformer=None,
energy_computer=None,
**kwargs):
super(SequenceContentAttention, self).__init__(**kwargs)
self.state_names = state_names
self.state_dims = state_dims
self.sequence_dim = sequence_dim
self.match_dim = match_dim
self.state_transformer = state_transformer
self.state_transformers = Parallel(input_names=state_names,
prototype=state_transformer,
name="state_trans")
if not sequence_transformer:
sequence_transformer = Linear(name="preprocess")
if not energy_computer:
energy_computer = ShallowEnergyComputer(name="energy_comp")
self.sequence_transformer = sequence_transformer
self.energy_computer = energy_computer
self.children = [self.state_transformers, sequence_transformer,
energy_computer]
def _push_allocation_config(self):
self.state_transformers.input_dims = self.state_dims
self.state_transformers.output_dims = {name: self.match_dim
for name in self.state_names}
self.sequence_transformer.input_dim = self.sequence_dim
self.sequence_transformer.output_dim = self.match_dim
self.energy_computer.input_dim = self.match_dim
self.energy_computer.output_dim = 1
@application(outputs=['glimpses', 'weights'])
def take_glimpses(self, sequence, preprocessed_sequence=None, mask=None,
**states):
r"""Compute attention weights and produce glimpses.
Parameters
----------
sequence : :class:`~tensor.TensorVariable`
The sequence, time is the 1-st dimension.
preprocessed_sequence : :class:`~tensor.TensorVariable`
The preprocessed sequence. If ``None``, is computed by calling
:meth:`preprocess`.
mask : :class:`~tensor.TensorVariable`
A 0/1 mask specifying available data. 0 means that the
corresponding sequence element is fake.
\*\*states
The states of the network.
Returns
-------
glimpses : :class:`~theano.Variable`
Linear combinations of sequence elements with the attention
weights.
weights : :class:`~theano.Variable`
The attention weights. The first dimension is batch, the second
is time.
"""
if not preprocessed_sequence:
preprocessed_sequence = self.preprocess(sequence)
transformed_states = self.state_transformers.apply(as_dict=True,
**states)
# Broadcasting of transformed states should be done automatically
match_vectors = sum(transformed_states.values(),
preprocessed_sequence)
energies = self.energy_computer.apply(match_vectors).reshape(
match_vectors.shape[:-1], ndim=match_vectors.ndim - 1)
unormalized_weights = tensor.exp(energies)
if mask:
unormalized_weights *= mask
weights = unormalized_weights / unormalized_weights.sum(axis=0)
glimpses = (tensor.shape_padright(weights) * sequence).sum(axis=0)
return glimpses, weights.dimshuffle(1, 0)
@take_glimpses.property('inputs')
def take_glimpses_inputs(self):
return (['sequence', 'preprocessed_sequence', 'mask'] +
self.state_names)
@application
def initial_glimpses(self, name, batch_size, sequence):
if name == "glimpses":
return tensor.zeros((batch_size, self.sequence_dim))
elif name == "weights":
return tensor.zeros((batch_size, sequence.shape[0]))
else:
raise ValueError("Unknown glimpse name {}".format(name))
@application(inputs=['sequence'], outputs=['preprocessed_sequence'])
def preprocess(self, sequence):
"""Preprocess a sequence for computing attention weights.
Parameters
----------
sequence : :class:`~tensor.TensorVariable`
The sequence, time is the 1-st dimension.
"""
return self.sequence_transformer.apply(sequence)
def get_dim(self, name):
if name in ['glimpses', 'sequence', 'preprocessed_sequence']:
return self.sequence_dim
if name in ['mask', 'weights']:
return 0
return super(SequenceContentAttention, self).get_dim(name)
Logistic(name='output')],
dims=[
32,
8,
8,
2,
],
weights_init=IsotropicGaussian(),
biases_init=IsotropicGaussian())
output_mlp.initialize()
parallel_nets = Parallel(
input_names=['l_x', 'r_x'],
input_dims=[left_dim, right_dim],
output_dims=[16, 16],
weights_init=IsotropicGaussian(),
biases_init=IsotropicGaussian(),
prototype=input_mlp,
)
parallel_nets.initialize()
l_h, r_h = parallel_nets.apply(l_x=l_x, r_x=r_x)
# Concatenate the inputs from the two hidden subnets into a single variable
# for input into the next layer.
merge = tensor.concatenate([l_h, r_h], axis=1)
y_hat = output_mlp.apply(merge)
# Define a cost function to optimize, and a classification error rate:
# Also apply the outputs from the net, and corresponding targets:
cost = CategoricalCrossEntropy().apply(y.flatten(), y_hat)
],
dims=[
32,
8,
8,
2,
],
weights_init=IsotropicGaussian(),
biases_init=IsotropicGaussian())
output_mlp.initialize()
parallel_nets = Parallel(
input_names=['l_x', 'r_x'],
input_dims=[left_dim, right_dim],
output_dims=[16, 16],
weights_init=IsotropicGaussian(),
biases_init=IsotropicGaussian(),
prototype=input_mlp,
)
parallel_nets.initialize()
l_h, r_h = parallel_nets.apply(l_x=l_x, r_x=r_x)
# Concatenate the inputs from the two hidden subnets into a single variable
# for input into the next layer.
merge = tensor.concatenate([l_h, r_h], axis=1)
y_hat = output_mlp.apply(merge)
# Define a cost function to optimize, and a classification error rate:
# Also apply the outputs from the net, and corresponding targets:
cost = CategoricalCrossEntropy().apply(y.flatten(), y_hat)
class SequenceMultiContentAttention(GenericSequenceAttention, Initializable):
@lazy(allocation=['match_dim'])
def __init__(self,
n_att_weights,
match_dim,
state_transformer=None,
attended_transformer=None,
energy_computer=None,
**kwargs):
super(SequenceContentAttention, self).__init__(**kwargs)
self.n_att_weights = n_att_weights
if not state_transformer:
state_transformer = Linear(use_bias=False)
self.match_dim = match_dim
self.state_transformer = state_transformer
self.state_transformers = Parallel(input_names=self.state_names,
prototype=state_transformer,
name="state_trans")
if not attended_transformer:
attended_transformer = Linear(name="preprocess")
if not energy_computer:
energy_computer = MultiShallowEnergyComputer(n_att_weights,
name="energy_comp")
self.attended_transformer = attended_transformer
self.energy_computer = energy_computer
self.children = [
self.state_transformers, attended_transformer, energy_computer
]
def _push_allocation_config(self):
self.state_transformers.input_dims = self.state_dims
self.state_transformers.output_dims = [
self.match_dim for name in self.state_names
]
self.attended_transformer.input_dim = self.attended_dim
self.attended_transformer.output_dim = self.match_dim
self.energy_computer.input_dim = self.match_dim
self.energy_computer.output_dim = 1
@application
def compute_energies(self, attended, preprocessed_attended, states):
if not preprocessed_attended:
preprocessed_attended = self.preprocess(attended)
transformed_states = self.state_transformers.apply(as_dict=True,
**states)
# Broadcasting of transformed states should be done automatically
match_vectors = sum(transformed_states.values(), preprocessed_attended)
energies = self.energy_computer.apply(match_vectors).reshape(
match_vectors.shape[:-1], ndim=match_vectors.ndim - 1)
return energies
@application(outputs=['weighted_averages', 'weights'])
def take_glimpses(self,
attended,
preprocessed_attended=None,
attended_mask=None,
**states):
r"""Compute attention weights and produce glimpses.
Parameters
----------
attended : :class:`~tensor.TensorVariable`
The sequence, time is the 1-st dimension.
preprocessed_attended : :class:`~tensor.TensorVariable`
The preprocessed sequence. If ``None``, is computed by calling
:meth:`preprocess`.
attended_mask : :class:`~tensor.TensorVariable`
A 0/1 mask specifying available data. 0 means that the
corresponding sequence element is fake.
\*\*states
The states of the network.
Returns
-------
weighted_averages : :class:`~theano.Variable`
Linear combinations of sequence elements with the attention
weights.
weights : :class:`~theano.Variable`
The attention weights. The first dimension is batch, the second
is time.
"""
energies = self.compute_energies(attended, preprocessed_attended,
states)
weights = self.compute_weights(energies, attended_mask)
weighted_averages = self.compute_weighted_averages(weights, attended)
return weighted_averages, weights.T
@take_glimpses.property('inputs')
def take_glimpses_inputs(self):
return (['attended', 'preprocessed_attended', 'attended_mask'] +
self.state_names)
@application(outputs=['weighted_averages', 'weights'])
def initial_glimpses(self, batch_size, attended):
return [
tensor.zeros((batch_size, self.attended_dim)),
tensor.zeros((batch_size, attended.shape[0]))
]
@application(inputs=['attended'], outputs=['preprocessed_attended'])
def preprocess(self, attended):
"""Preprocess the sequence for computing attention weights.
Parameters
----------
attended : :class:`~tensor.TensorVariable`
The attended sequence, time is the 1-st dimension.
"""
return self.attended_transformer.apply(attended)
def get_dim(self, name):
if name in ['weighted_averages']:
return self.attended_dim
if name in ['weights']:
return 0
return super(SequenceContentAttention, self).get_dim(name)
def __init__(self,
match_dim,
max_fertility,
state_transformer=None,
attended_transformer=None,
fertility_transformer=None,
att_record_transformer=None,
energy_computer=None,
**kwargs):
"""Creates an attention brick with 'linguistic' coverage.
Compare with ``SequenceContentAttention``.
Args:
match_dim (int): Dimensionality of the match vector
max_fertility (float): Maximum fertility of a source
annotation (N in Tu et al.). If
this is set to 0 or smaller, we fix
fertilities to 1 and do not estimate
them.
state_transformer (Brick): Transformation for the decoder
state
attended_transformer (Brick): Transformation for the source
annotations
fertility_transformer (Brick): Transformation which
calculates fertilities
att_record_transformer (Brick): Transformation for the
attentional records
energy_computer (Brick): Sub network for calculating the
energies from the match vector
"""
super(CoverageContentAttention, self).__init__(**kwargs)
self.use_fertility = (max_fertility > 0.0001)
self.max_fertility = max_fertility
if not state_transformer:
state_transformer = Linear(use_bias=False)
self.match_dim = match_dim
self.state_transformer = state_transformer
self.state_transformers = Parallel(input_names=self.state_names,
prototype=state_transformer,
name="state_trans")
if not attended_transformer:
attended_transformer = Linear(name="preprocess")
if not att_record_transformer:
att_record_transformer = Linear(name="att_record_trans")
if not energy_computer:
energy_computer = ShallowEnergyComputer(name="energy_comp")
self.attended_transformer = attended_transformer
self.att_record_transformer = att_record_transformer
self.energy_computer = energy_computer
self.children = [
self.state_transformers, attended_transformer,
att_record_transformer, energy_computer
]
if self.use_fertility:
if not fertility_transformer:
fertility_transformer = MLP(activations=[Logistic()],
name='fertility_trans')
self.fertility_transformer = fertility_transformer
self.children.append(fertility_transformer)
class CoverageContentAttention(GenericSequenceAttention, Initializable):
"""This is the 'linguistic' coverage model from Tu et al., 2016.
The fertility of each source annotation is estimated with a linear
transform followed by a sigmoid times N (N is the maximum fertility)
The coverage model keeps track of the attention record for each
annotation and feeds the cumulative record divided by the fertility
to the match vector which eventually determines the attention
weight.
This code base of this implementation is close to
``SequenceContentAttention``.
"""
@lazy(allocation=['match_dim'])
def __init__(self,
match_dim,
max_fertility,
state_transformer=None,
attended_transformer=None,
fertility_transformer=None,
att_record_transformer=None,
energy_computer=None,
**kwargs):
"""Creates an attention brick with 'linguistic' coverage.
Compare with ``SequenceContentAttention``.
Args:
match_dim (int): Dimensionality of the match vector
max_fertility (float): Maximum fertility of a source
annotation (N in Tu et al.). If
this is set to 0 or smaller, we fix
fertilities to 1 and do not estimate
them.
state_transformer (Brick): Transformation for the decoder
state
attended_transformer (Brick): Transformation for the source
annotations
fertility_transformer (Brick): Transformation which
calculates fertilities
att_record_transformer (Brick): Transformation for the
attentional records
energy_computer (Brick): Sub network for calculating the
energies from the match vector
"""
super(CoverageContentAttention, self).__init__(**kwargs)
self.use_fertility = (max_fertility > 0.0001)
self.max_fertility = max_fertility
if not state_transformer:
state_transformer = Linear(use_bias=False)
self.match_dim = match_dim
self.state_transformer = state_transformer
self.state_transformers = Parallel(input_names=self.state_names,
prototype=state_transformer,
name="state_trans")
if not attended_transformer:
attended_transformer = Linear(name="preprocess")
if not att_record_transformer:
att_record_transformer = Linear(name="att_record_trans")
if not energy_computer:
energy_computer = ShallowEnergyComputer(name="energy_comp")
self.attended_transformer = attended_transformer
self.att_record_transformer = att_record_transformer
self.energy_computer = energy_computer
self.children = [
self.state_transformers, attended_transformer,
att_record_transformer, energy_computer
]
if self.use_fertility:
if not fertility_transformer:
fertility_transformer = MLP(activations=[Logistic()],
name='fertility_trans')
self.fertility_transformer = fertility_transformer
self.children.append(fertility_transformer)
def _push_allocation_config(self):
self.state_transformers.input_dims = self.state_dims
self.state_transformers.output_dims = [
self.match_dim for name in self.state_names
]
self.attended_transformer.input_dim = self.attended_dim
self.attended_transformer.output_dim = self.match_dim
self.att_record_transformer.input_dim = 1
self.att_record_transformer.output_dim = self.match_dim
self.energy_computer.input_dim = self.match_dim
self.energy_computer.output_dim = 1
if self.use_fertility:
self.fertility_transformer.dims = [self.attended_dim, 1]
@application
def compute_energies(self, attended, preprocessed_attended, att_records,
states):
if not preprocessed_attended:
preprocessed_attended = self.preprocess(attended)
transformed_states = self.state_transformers.apply(as_dict=True,
**states)
transformed_att_records = self.att_record_transformer.apply(
att_records.dimshuffle((1, 0, 2)))
# Broadcasting of transformed states should be done automatically
match_vectors = sum(transformed_states.values(), preprocessed_attended)
match_vectors = match_vectors + transformed_att_records
energies = self.energy_computer.apply(match_vectors).reshape(
match_vectors.shape[:-1], ndim=match_vectors.ndim - 1)
return energies
@application(outputs=['weighted_averages', 'weights', 'att_records'])
def take_glimpses(self,
attended,
preprocessed_attended=None,
attended_mask=None,
att_records=None,
**states):
energies = self.compute_energies(attended, preprocessed_attended,
att_records, states)
weights = self.compute_weights(energies, attended_mask)
if self.use_fertility:
fertilities = self.max_fertility * self.fertility_transformer.apply(
attended)
# Theanos optimizer ensures that fertilities are computed only once
att_records = att_records + weights.dimshuffle((1, 0, 'x')) / \
fertilities.dimshuffle((1, 0, 2))
else:
att_records = att_records + weights.dimshuffle((1, 0, 'x'))
weighted_averages = self.compute_weighted_averages(weights, attended)
return weighted_averages, weights.T, att_records
@take_glimpses.property('inputs')
def take_glimpses_inputs(self):
return ([
'attended', 'preprocessed_attended', 'attended_mask', 'att_records'
] + self.state_names)
@application(outputs=['weighted_averages', 'weights', 'att_records'])
def initial_glimpses(self, batch_size, attended):
return [
tensor.zeros((batch_size, self.attended_dim)),
tensor.zeros((batch_size, attended.shape[0])),
tensor.zeros((batch_size, attended.shape[0], 1))
]
@application(inputs=['attended'], outputs=['preprocessed_attended'])
def preprocess(self, attended):
"""Preprocess the sequence for computing attention weights.
Args:
attended (TensorVariable): The attended sequence, time is
the 1-st dimension.
"""
return self.attended_transformer.apply(attended)
def get_dim(self, name):
if name in ['weighted_averages']:
return self.attended_dim
if name in ['weights', 'att_records']:
return 0
return super(CoverageContentAttention, self).get_dim(name)
class PushDownSequenceContentAttention(SequenceContentAttention,
Initializable):
"""Adds an external memory structure in form of a neural stack to
the decoder. The neural stack is operated through a pop operation,
a push operation, and an input variable, which all are computed
from the decoder state. This neural stack implementation is similar
to Mikolovs model:
- Apply the (continuous) pop operation if the pop gate is on
- Read the top element on the stack
- Push the stack input vector if the push gate is on
- Concatenate the read element from the stack to the weighted
averages of source annotations to obtain the final context
vector
Note that this implementation realizes a stack with limited depth
because Blocks didn't allow to have glimpses of varying size. In
practice, however, we think that a limited size is appropriate for
machine translation.
"""
def __init__(self, stack_dim=500, **kwargs):
"""Sole constructor.
Args:
stack_dim (int): Size of vectors on the stack.
"""
super(PushDownSequenceContentAttention, self).__init__(**kwargs)
self.stack_dim = stack_dim
self.max_stack_depth = 25
self.stack_op_names = self.state_names + ['weighted_averages']
self.stack_pop_transformer = MLP(activations=[Logistic()], dims=None)
self.stack_pop_transformers = Parallel(
input_names=self.stack_op_names,
prototype=self.stack_pop_transformer,
name="stack_pop")
self.stack_push_transformer = MLP(activations=[Logistic()], dims=None)
self.stack_push_transformers = Parallel(
input_names=self.stack_op_names,
prototype=self.stack_push_transformer,
name="stack_push")
self.stack_input_transformer = Linear()
self.stack_input_transformers = Parallel(
input_names=self.stack_op_names,
prototype=self.stack_input_transformer,
name="stack_input")
self.children.append(self.stack_pop_transformers)
self.children.append(self.stack_push_transformers)
self.children.append(self.stack_input_transformers)
def _push_allocation_config(self):
"""Sets the dimensions of the stack operation networks """
super(PushDownSequenceContentAttention, self)._push_allocation_config()
self.stack_op_dims = self.state_dims + [self.attended_dim]
n_states = len(self.stack_op_dims)
self.stack_pop_transformers.input_dims = self.stack_op_dims
self.stack_pop_transformers.output_dims = [1] * n_states
self.stack_push_transformers.input_dims = self.stack_op_dims
self.stack_push_transformers.output_dims = [1] * n_states
self.stack_input_transformers.input_dims = self.stack_op_dims
self.stack_input_transformers.output_dims = [self.stack_dim] * n_states
def _allocate(self):
"""Allocates the single parameter of this brick: the initial
element on the stack.
"""
self.parameters.append(
shared_floatx_nans((1, self.stack_dim), name='init_stack'))
add_role(self.parameters[-1], INITIAL_STATE)
def _initialize(self):
"""Initializes the initial element on the stack with zero. """
self.biases_init.initialize(self.parameters[-1], self.rng)
@application(outputs=['context_vector', 'weights', 'stack'])
def take_glimpses(self,
attended,
preprocessed_attended=None,
attended_mask=None,
stack=None,
**states):
"""This method is an extension to ``take_glimpses`` in
``SequenceContentAttention``. After computing the weighted
averages of source annotations, it operates the stack, i.e.
pops the top element, reads out the top of the stack, and
pushes a new element. The first glimpse ``context_vector`` is
the concatenation of weighted source annotations and stack
output.
Args:
attended (Variable): Source annotations
preprocessed_attended (Variable): Transformed source
annotations used to
compute energies
attended_mask (Variable): Source mask
stack (Variable): Current state of the stack
\*\*states (Variable): Decoder state
Returns:
Tuple. The first element is used as context vector for the
decoder state update. ``stack`` is a recurrent glimpse which
is used in the next ``take_glimpse`` iteration.
"""
energies = self.compute_energies(attended, preprocessed_attended,
states)
weights = self.compute_weights(energies, attended_mask)
weighted_averages = self.compute_weighted_averages(weights, attended)
stack_op_input = states
stack_op_input['weighted_averages'] = weighted_averages
stack_pop = sum(
self.stack_pop_transformers.apply(as_dict=True,
**stack_op_input).values())
stack_push = sum(
self.stack_push_transformers.apply(as_dict=True,
**stack_op_input).values())
stack_input = sum(
self.stack_input_transformers.apply(as_dict=True,
**stack_op_input).values())
# the stack has shape (batch_size, stack_depth, stack_dim)
batch_size = stack.shape[0]
stack_dim = stack_input.shape[1]
default_stack_entry = tensor.repeat(self.parameters[-1][None, :, :],
batch_size, 0)
pushed_stack = tensor.concatenate(
[stack_input.reshape((batch_size, 1, stack_dim)), stack[:, 1:, :]],
axis=1)
popped_stack = tensor.concatenate(
[stack[:, :-1, :], default_stack_entry], axis=1)
pop_gate = stack_pop.reshape((batch_size, 1, 1))
push_gate = stack_push.reshape((batch_size, 1, 1))
read_stack = pop_gate * popped_stack + (1.0 - pop_gate) * stack
stack_output = read_stack[:, 0, :]
new_stack = push_gate * pushed_stack + (1.0 - push_gate) * read_stack
context_vector = tensor.concatenate([weighted_averages, stack_output],
axis=1)
return context_vector, weights.T, new_stack
@take_glimpses.property('inputs')
def take_glimpses_inputs(self):
"""Defines the ``inputs`` decoration for ``take_glimpses``. """
return (
['attended', 'preprocessed_attended', 'attended_mask', 'stack'] +
self.state_names)
@application(outputs=['context_vector', 'weights', 'stack'])
def initial_glimpses(self, batch_size, attended):
"""The stack is initialized with the default entry. All other
glimpses are initialized with zero.
"""
default_stack_entry = tensor.repeat(self.parameters[-1][None, :, :],
batch_size, 0)
return [
tensor.zeros((batch_size, self.attended_dim + self.stack_dim)),
tensor.zeros((batch_size, attended.shape[0])),
tensor.repeat(default_stack_entry, self.max_stack_depth, 1)
]
def get_dim(self, name):
"""Get dimensions of variables. Delegates to super class if
``name`` is not used in this class.
"""
if name in ['context_vector']:
return self.attended_dim + self.stack_dim
if name in ['weights']:
return 0
if name in ['stack']:
return self.max_stack_depth, self.stack_dim
return super(PushDownSequenceContentAttention, self).get_dim(name)
