def test_t8(self):
pj_float = json.loads(open("files/test.boris").read())
pj = utilities.convert_time_to_decimal(pj_float)
r = utilities.get_current_states_modifiers_by_subject(
state_behaviors_codes=["s"],
events=pj["observations"]["observation #1"]["events"],
subjects=pj["subjects_conf"],
time=Decimal("8.0"),
include_modifiers=False)
assert r == {'0': [], '1': []}
def events_to_timed_behavioral_sequences(pj: dict,
obs_id: str,
subject: str,
parameters: dict,
precision: float,
behav_seq_separator: str) -> str:
"""
return the behavioral string for subject in obsId
Args:
pj (dict): project
obs_id (str): observation id
subj (str): subject
parameters (dict): parameters
precision (float): time value for scan sample
behav_seq_separator (str): separator of behviors in behavioral sequences
Returns:
str: behavioral string for selected subject in selected observation
"""
out = ""
current_states = []
# events_with_status = project_functions.events_start_stop(pj[ETHOGRAM], pj[OBSERVATIONS][obs_id][EVENTS])
state_behaviors_codes = utilities.state_behavior_codes(pj[ETHOGRAM])
delta = Decimal(str(round(precision, 3)))
out = ""
t = Decimal("0.000")
current = []
while t < pj[OBSERVATIONS][obs_id][EVENTS][-1][0]:
'''
if out:
out += behav_seq_separator
'''
csbs = utilities.get_current_states_modifiers_by_subject(state_behaviors_codes,
pj[OBSERVATIONS][obs_id][EVENTS],
{"": {"name": subject}},
t,
include_modifiers=False)[""]
if csbs:
if current:
if csbs == current[-1]:
current.append("+".join(csbs))
else:
out.append(current)
current = [csbs]
else:
current = [csbs]
t += delta
return out
def test_events_with_modifiers_required(self):
pj_float = json.loads(open("files/test.boris").read())
pj = utilities.convert_time_to_decimal(pj_float)
r = utilities.get_current_states_modifiers_by_subject(
state_behaviors_codes=["r", "s"],
events=pj["observations"]["modifiers"]["events"],
subjects={
"0": {
"key": "",
"name": "",
"description": "no focal subject"
}
},
time=Decimal("20"),
include_modifiers=True)
#print(r)
assert r == {'0': ['r (m1)']}