def _setUp(self, double=False, cuda=False):
device = torch.device("cuda") if cuda else torch.device("cpu")
dtype = torch.double if double else torch.float
train_x = torch.linspace(0, 1, 10, device=device, dtype=dtype).unsqueeze(-1)
train_y = torch.sin(train_x * (2 * math.pi)).squeeze(-1)
train_yvar = torch.tensor(0.1 ** 2, device=device)
noise = torch.tensor(NOISE, device=device, dtype=dtype)
self.train_x = train_x
self.train_y = train_y + noise
self.train_yvar = train_yvar
self.bounds = torch.tensor([[0.0], [1.0]], device=device, dtype=dtype)
model_st = SingleTaskGP(self.train_x, self.train_y)
self.model_st = model_st.to(device=device, dtype=dtype)
self.mll_st = ExactMarginalLogLikelihood(
self.model_st.likelihood, self.model_st
)
self.mll_st = fit_gpytorch_model(self.mll_st, options={"maxiter": 5})
model_fn = FixedNoiseGP(
self.train_x, self.train_y, self.train_yvar.expand_as(self.train_y)
)
self.model_fn = model_fn.to(device=device, dtype=dtype)
self.mll_fn = ExactMarginalLogLikelihood(
self.model_fn.likelihood, self.model_fn
)
self.mll_fn = fit_gpytorch_model(self.mll_fn, options={"maxiter": 5})
def _setUp(self, double=False, cuda=False, expand=False):
device = torch.device("cuda") if cuda else torch.device("cpu")
dtype = torch.double if double else torch.float
train_x = torch.linspace(0, 1, 10, device=device, dtype=dtype).unsqueeze(-1)
train_y = torch.sin(train_x * (2 * math.pi)).squeeze(-1)
noise = torch.tensor(NOISE, device=device, dtype=dtype)
self.train_x = train_x
self.train_y = train_y + noise
if expand:
self.train_x = self.train_x.expand(-1, 2)
ics = torch.tensor([[0.5, 1.0]], device=device, dtype=dtype)
else:
ics = torch.tensor([[0.5]], device=device, dtype=dtype)
self.initial_conditions = ics
self.f_best = self.train_y.max().item()
model = SingleTaskGP(self.train_x, self.train_y)
self.model = model.to(device=device, dtype=dtype)
self.mll = ExactMarginalLogLikelihood(self.model.likelihood, self.model)
self.mll = fit_gpytorch_model(self.mll, options={"maxiter": 1})
def test_noisy_expected_improvement(self, cuda=False):
for dtype in (torch.float, torch.double):
model = self._get_model(cuda=cuda, dtype=dtype)
X_observed = model.train_inputs[0]
nEI = NoisyExpectedImprovement(model, X_observed, num_fantasies=5)
X_test = torch.tensor(
[[[0.25]], [[0.75]]],
device=X_observed.device,
dtype=dtype,
requires_grad=True,
)
val = nEI(X_test)
# test basics
self.assertEqual(val.dtype, dtype)
self.assertEqual(val.device.type, X_observed.device.type)
self.assertEqual(val.shape, torch.Size([2]))
# test values
self.assertGreater(val[0].item(), 1e-4)
self.assertLess(val[1].item(), 1e-6)
# test gradient
val.sum().backward()
self.assertGreater(X_test.grad[0].abs().item(), 1e-4)
# test without gradient
with torch.no_grad():
nEI(X_test)
# test non-FixedNoiseGP model
other_model = SingleTaskGP(X_observed,
model.train_targets.unsqueeze(-1))
with self.assertRaises(UnsupportedError):
NoisyExpectedImprovement(other_model,
X_observed,
num_fantasies=5)
# Test with minimize
nEI = NoisyExpectedImprovement(model,
X_observed,
num_fantasies=5,
maximize=False)
def _sample(self, candidates: Optional[np.array] = None) -> np.array:
if len(self.X_observed) < self.num_initial_random_draws:
return self.initial_sampler.sample(candidates=candidates)
else:
z_observed = torch.Tensor(
self.transform_outputs(self.y_observed.numpy()))
# build and fit GP
gp = SingleTaskGP(
train_X=self.X_observed,
train_Y=z_observed,
# special likelihood for numerical Cholesky errors, following advice from
# https://www.gitmemory.com/issue/pytorch/botorch/179/506276521
likelihood=GaussianLikelihood(
noise_constraint=GreaterThan(1e-3)),
)
mll = ExactMarginalLogLikelihood(gp.likelihood, gp)
fit_gpytorch_model(mll)
acq = self.expected_improvement(
model=gp,
best_f=z_observed.min(dim=0).values,
)
if candidates is None:
candidate, acq_value = optimize_acqf(
acq,
bounds=self.bounds_tensor,
q=1,
num_restarts=5,
raw_samples=100,
)
return candidate[0]
else:
# (N,)
ei = acq(torch.Tensor(candidates).unsqueeze(dim=-2))
return torch.Tensor(candidates[ei.argmax()])
def test_roundtrip(self):
for dtype in (torch.float, torch.double):
train_X = torch.rand(10, 2, device=self.device, dtype=dtype)
train_Y1 = train_X.sum(dim=-1)
train_Y2 = train_X[:, 0] - train_X[:, 1]
train_Y = torch.stack([train_Y1, train_Y2], dim=-1)
# SingleTaskGP
batch_gp = SingleTaskGP(train_X, train_Y)
list_gp = batched_to_model_list(batch_gp)
batch_gp_recov = model_list_to_batched(list_gp)
sd_orig = batch_gp.state_dict()
sd_recov = batch_gp_recov.state_dict()
self.assertTrue(set(sd_orig) == set(sd_recov))
self.assertTrue(
all(torch.equal(sd_orig[k], sd_recov[k]) for k in sd_orig))
# FixedNoiseGP
batch_gp = FixedNoiseGP(train_X, train_Y, torch.rand_like(train_Y))
list_gp = batched_to_model_list(batch_gp)
batch_gp_recov = model_list_to_batched(list_gp)
sd_orig = batch_gp.state_dict()
sd_recov = batch_gp_recov.state_dict()
self.assertTrue(set(sd_orig) == set(sd_recov))
self.assertTrue(
all(torch.equal(sd_orig[k], sd_recov[k]) for k in sd_orig))
# SingleTaskMultiFidelityGP
for lin_trunc in (False, True):
batch_gp = SingleTaskMultiFidelityGP(
train_X,
train_Y,
iteration_fidelity=1,
linear_truncated=lin_trunc)
list_gp = batched_to_model_list(batch_gp)
batch_gp_recov = model_list_to_batched(list_gp)
sd_orig = batch_gp.state_dict()
sd_recov = batch_gp_recov.state_dict()
self.assertTrue(set(sd_orig) == set(sd_recov))
self.assertTrue(
all(torch.equal(sd_orig[k], sd_recov[k]) for k in sd_orig))
def test_cache_root_decomposition(self):
tkwargs = {"device": self.device}
for dtype in (torch.float, torch.double):
tkwargs["dtype"] = dtype
# test mt-mvn
train_x = torch.rand(2, 1, **tkwargs)
train_y = torch.rand(2, 2, **tkwargs)
test_x = torch.rand(2, 1, **tkwargs)
model = SingleTaskGP(train_x, train_y)
sampler = IIDNormalSampler(1)
with torch.no_grad():
posterior = model.posterior(test_x)
acqf = DummyCachedCholeskyAcqf(
model=model,
sampler=sampler,
objective=GenericMCObjective(lambda Y: Y[..., 0]),
)
baseline_L = torch.eye(2, **tkwargs)
with mock.patch(
EXTRACT_BATCH_COVAR_PATH,
wraps=extract_batch_covar) as mock_extract_batch_covar:
with mock.patch(CHOLESKY_PATH,
return_value=baseline_L) as mock_cholesky:
acqf._cache_root_decomposition(posterior=posterior)
mock_extract_batch_covar.assert_called_once_with(
posterior.mvn)
mock_cholesky.assert_called_once()
# test mvn
model = SingleTaskGP(train_x, train_y[:, :1])
with torch.no_grad():
posterior = model.posterior(test_x)
with mock.patch(
EXTRACT_BATCH_COVAR_PATH) as mock_extract_batch_covar:
with mock.patch(CHOLESKY_PATH,
return_value=baseline_L) as mock_cholesky:
acqf._cache_root_decomposition(posterior=posterior)
mock_extract_batch_covar.assert_not_called()
mock_cholesky.assert_called_once()
self.assertTrue(torch.equal(acqf._baseline_L, baseline_L))
def qparego_candidates_func(
train_x: "torch.Tensor",
train_obj: "torch.Tensor",
train_con: Optional["torch.Tensor"],
bounds: "torch.Tensor",
) -> "torch.Tensor":
"""Quasi MC-based extended ParEGO (qParEGO) for constrained multi-objective optimization.
The default value of ``candidates_func`` in :class:`~optuna.integration.BoTorchSampler`
with multi-objective optimization when the number of objectives is larger than three.
.. seealso::
:func:`~optuna.integration.botorch.qei_candidates_func` for argument and return value
descriptions.
"""
n_objectives = train_obj.size(-1)
weights = sample_simplex(n_objectives).squeeze()
scalarization = get_chebyshev_scalarization(weights=weights, Y=train_obj)
if train_con is not None:
train_y = torch.cat([train_obj, train_con], dim=-1)
constraints = []
n_constraints = train_con.size(1)
for i in range(n_constraints):
constraints.append(lambda Z, i=i: Z[..., -n_constraints + i])
objective = ConstrainedMCObjective(
objective=lambda Z: scalarization(Z[..., :n_objectives]),
constraints=constraints,
)
else:
train_y = train_obj
objective = GenericMCObjective(scalarization)
train_x = normalize(train_x, bounds=bounds)
model = SingleTaskGP(train_x,
train_y,
outcome_transform=Standardize(m=train_y.size(-1)))
mll = ExactMarginalLogLikelihood(model.likelihood, model)
fit_gpytorch_model(mll)
acqf = qExpectedImprovement(
model=model,
best_f=objective(train_y).max(),
sampler=SobolQMCNormalSampler(num_samples=256),
objective=objective,
)
standard_bounds = torch.zeros_like(bounds)
standard_bounds[1] = 1
candidates, _ = optimize_acqf(
acq_function=acqf,
bounds=standard_bounds,
q=1,
num_restarts=20,
raw_samples=1024,
options={
"batch_limit": 5,
"maxiter": 200
},
sequential=True,
)
candidates = unnormalize(candidates.detach(), bounds=bounds)
return candidates
def test_model_list_to_batched(self):
for dtype in (torch.float, torch.double):
# basic test
train_X = torch.rand(10, 2, device=self.device, dtype=dtype)
train_Y1 = train_X.sum(dim=-1, keepdim=True)
train_Y2 = (train_X[:, 0] - train_X[:, 1]).unsqueeze(-1)
gp1 = SingleTaskGP(train_X, train_Y1)
gp2 = SingleTaskGP(train_X, train_Y2)
list_gp = ModelListGP(gp1, gp2)
batch_gp = model_list_to_batched(list_gp)
self.assertIsInstance(batch_gp, SingleTaskGP)
# test degenerate (single model)
batch_gp = model_list_to_batched(ModelListGP(gp1))
self.assertEqual(batch_gp._num_outputs, 1)
# test different model classes
gp2 = FixedNoiseGP(train_X, train_Y1, torch.ones_like(train_Y1))
with self.assertRaises(UnsupportedError):
model_list_to_batched(ModelListGP(gp1, gp2))
# test non-batched models
gp1_ = SimpleGPyTorchModel(train_X, train_Y1)
gp2_ = SimpleGPyTorchModel(train_X, train_Y2)
with self.assertRaises(UnsupportedError):
model_list_to_batched(ModelListGP(gp1_, gp2_))
# test list of multi-output models
train_Y = torch.cat([train_Y1, train_Y2], dim=-1)
gp2 = SingleTaskGP(train_X, train_Y)
with self.assertRaises(UnsupportedError):
model_list_to_batched(ModelListGP(gp1, gp2))
# test different training inputs
gp2 = SingleTaskGP(2 * train_X, train_Y2)
with self.assertRaises(UnsupportedError):
model_list_to_batched(ModelListGP(gp1, gp2))
# check scalar agreement
gp2 = SingleTaskGP(train_X, train_Y2)
gp2.likelihood.noise_covar.noise_prior.rate.fill_(1.0)
with self.assertRaises(UnsupportedError):
model_list_to_batched(ModelListGP(gp1, gp2))
# check tensor shape agreement
gp2 = SingleTaskGP(train_X, train_Y2)
gp2.covar_module.raw_outputscale = torch.nn.Parameter(
torch.tensor([0.0], device=self.device, dtype=dtype))
with self.assertRaises(UnsupportedError):
model_list_to_batched(ModelListGP(gp1, gp2))
# test HeteroskedasticSingleTaskGP
gp2 = HeteroskedasticSingleTaskGP(train_X, train_Y1,
torch.ones_like(train_Y1))
with self.assertRaises(NotImplementedError):
model_list_to_batched(ModelListGP(gp2))
# test custom likelihood
gp2 = SingleTaskGP(train_X,
train_Y2,
likelihood=GaussianLikelihood())
with self.assertRaises(NotImplementedError):
model_list_to_batched(ModelListGP(gp2))
# test FixedNoiseGP
train_X = torch.rand(10, 2, device=self.device, dtype=dtype)
train_Y1 = train_X.sum(dim=-1, keepdim=True)
train_Y2 = (train_X[:, 0] - train_X[:, 1]).unsqueeze(-1)
gp1_ = FixedNoiseGP(train_X, train_Y1, torch.rand_like(train_Y1))
gp2_ = FixedNoiseGP(train_X, train_Y2, torch.rand_like(train_Y2))
list_gp = ModelListGP(gp1_, gp2_)
batch_gp = model_list_to_batched(list_gp)
# test SingleTaskMultiFidelityGP
gp1_ = SingleTaskMultiFidelityGP(train_X,
train_Y1,
iteration_fidelity=1)
gp2_ = SingleTaskMultiFidelityGP(train_X,
train_Y2,
iteration_fidelity=1)
list_gp = ModelListGP(gp1_, gp2_)
batch_gp = model_list_to_batched(list_gp)
gp2_ = SingleTaskMultiFidelityGP(train_X,
train_Y2,
iteration_fidelity=2)
list_gp = ModelListGP(gp1_, gp2_)
with self.assertRaises(UnsupportedError):
model_list_to_batched(list_gp)
# test input transform
input_tf = Normalize(
d=2,
bounds=torch.tensor([[0.0, 0.0], [1.0, 1.0]],
device=self.device,
dtype=dtype),
)
gp1_ = SingleTaskGP(train_X, train_Y1, input_transform=input_tf)
gp2_ = SingleTaskGP(train_X, train_Y2, input_transform=input_tf)
list_gp = ModelListGP(gp1_, gp2_)
batch_gp = model_list_to_batched(list_gp)
self.assertIsInstance(batch_gp.input_transform, Normalize)
self.assertTrue(
torch.equal(batch_gp.input_transform.bounds, input_tf.bounds))
# test different input transforms
input_tf2 = Normalize(
d=2,
bounds=torch.tensor([[-1.0, -1.0], [1.0, 1.0]],
device=self.device,
dtype=dtype),
)
gp1_ = SingleTaskGP(train_X, train_Y1, input_transform=input_tf)
gp2_ = SingleTaskGP(train_X, train_Y2, input_transform=input_tf2)
list_gp = ModelListGP(gp1_, gp2_)
with self.assertRaises(UnsupportedError):
model_list_to_batched(list_gp)
# test batched input transform
input_tf2 = Normalize(
d=2,
bounds=torch.tensor([[-1.0, -1.0], [1.0, 1.0]],
device=self.device,
dtype=dtype),
batch_shape=torch.Size([3]),
)
gp1_ = SingleTaskGP(train_X, train_Y1, input_transform=input_tf2)
gp2_ = SingleTaskGP(train_X, train_Y2, input_transform=input_tf2)
list_gp = ModelListGP(gp1_, gp2_)
with self.assertRaises(UnsupportedError):
model_list_to_batched(list_gp)
# test outcome transform
octf = Standardize(m=1)
gp1_ = SingleTaskGP(train_X, train_Y1, outcome_transform=octf)
gp2_ = SingleTaskGP(train_X, train_Y2, outcome_transform=octf)
list_gp = ModelListGP(gp1_, gp2_)
with self.assertRaises(UnsupportedError):
model_list_to_batched(list_gp)
def test_proximal(self):
for dtype in (torch.float, torch.double):
train_X = torch.rand(5, 3, device=self.device, dtype=dtype)
train_Y = train_X.norm(dim=-1, keepdim=True)
model = (SingleTaskGP(train_X, train_Y).to(device=self.device,
dtype=dtype).eval())
EI = ExpectedImprovement(model, best_f=0.0)
# test single point
proximal_weights = torch.ones(3, device=self.device, dtype=dtype)
test_X = torch.rand(1, 3, device=self.device, dtype=dtype)
EI_prox = ProximalAcquisitionFunction(
EI, proximal_weights=proximal_weights)
ei = EI(test_X)
mv_normal = MultivariateNormal(train_X[-1],
torch.diag(proximal_weights))
test_prox_weight = torch.exp(
mv_normal.log_prob(test_X)) / torch.exp(
mv_normal.log_prob(train_X[-1]))
ei_prox = EI_prox(test_X)
self.assertTrue(torch.allclose(ei_prox, ei * test_prox_weight))
self.assertTrue(ei_prox.shape == torch.Size([1]))
# test t-batch with broadcasting
test_X = torch.rand(4, 1, 3, device=self.device, dtype=dtype)
ei = EI(test_X)
mv_normal = MultivariateNormal(train_X[-1],
torch.diag(proximal_weights))
test_prox_weight = torch.exp(
mv_normal.log_prob(test_X)) / torch.exp(
mv_normal.log_prob(train_X[-1]))
ei_prox = EI_prox(test_X)
self.assertTrue(
torch.allclose(ei_prox, ei * test_prox_weight.flatten()))
self.assertTrue(ei_prox.shape == torch.Size([4]))
# test MC acquisition function
qEI = qExpectedImprovement(model, best_f=0.0)
test_X = torch.rand(4, 1, 3, device=self.device, dtype=dtype)
qEI_prox = ProximalAcquisitionFunction(
qEI, proximal_weights=proximal_weights)
qei = qEI(test_X)
mv_normal = MultivariateNormal(train_X[-1],
torch.diag(proximal_weights))
test_prox_weight = torch.exp(
mv_normal.log_prob(test_X)) / torch.exp(
mv_normal.log_prob(train_X[-1]))
qei_prox = qEI_prox(test_X)
self.assertTrue(
torch.allclose(qei_prox, qei * test_prox_weight.flatten()))
self.assertTrue(qei_prox.shape == torch.Size([4]))
# test gradient
test_X = torch.rand(1,
3,
device=self.device,
dtype=dtype,
requires_grad=True)
ei_prox = EI_prox(test_X)
ei_prox.backward()
# test model without train_inputs
bad_model = DummyModel()
with self.assertRaises(UnsupportedError):
ProximalAcquisitionFunction(
ExpectedImprovement(bad_model, 0.0), proximal_weights)
# test proximal weights that do not match training_inputs
train_X = torch.rand(5, 1, 3, device=self.device, dtype=dtype)
train_Y = train_X.norm(dim=-1, keepdim=True)
model = SingleTaskGP(train_X,
train_Y).to(device=self.device).eval()
with self.assertRaises(ValueError):
ProximalAcquisitionFunction(ExpectedImprovement(model, 0.0),
proximal_weights[:1])
with self.assertRaises(ValueError):
ProximalAcquisitionFunction(
ExpectedImprovement(model, 0.0),
torch.rand(3, 3, device=self.device, dtype=dtype),
)
# test for x_pending points
pending_acq = DummyAcquisitionFunction(model)
pending_acq.set_X_pending(
torch.rand(3, 3, device=self.device, dtype=dtype))
with self.assertRaises(UnsupportedError):
ProximalAcquisitionFunction(pending_acq, proximal_weights)
# test model with multi-batch training inputs
train_X = torch.rand(5, 2, 3, device=self.device, dtype=dtype)
train_Y = train_X.norm(dim=-1, keepdim=True)
bad_single_task = (SingleTaskGP(
train_X, train_Y).to(device=self.device).eval())
with self.assertRaises(UnsupportedError):
ProximalAcquisitionFunction(
ExpectedImprovement(bad_single_task, 0.0),
proximal_weights)
def step(self, snapshot_mode: str, meta_info: dict = None):
if not self.initialized:
# Start initialization phase
self.train_init_policies()
self.eval_init_policies()
self.initialized = True
# Normalize the input data and standardize the output data
cands_norm = self.uc_normalizer.project_to(self.cands)
cands_values_stdized = standardize(self.cands_values).unsqueeze(1)
# Create and fit the GP model
gp = SingleTaskGP(cands_norm, cands_values_stdized)
gp.likelihood.noise_covar.register_constraint('raw_noise',
GreaterThan(1e-5))
mll = ExactMarginalLogLikelihood(gp.likelihood, gp)
fit_gpytorch_model(mll)
print_cbt('Fitted the GP.', 'g')
# Acquisition functions
if self.acq_fcn_type == 'UCB':
acq_fcn = UpperConfidenceBound(gp,
beta=self.acq_param.get(
'beta', 0.1),
maximize=True)
elif self.acq_fcn_type == 'EI':
acq_fcn = ExpectedImprovement(
gp, best_f=cands_values_stdized.max().item(), maximize=True)
elif self.acq_fcn_type == 'PI':
acq_fcn = ProbabilityOfImprovement(
gp, best_f=cands_values_stdized.max().item(), maximize=True)
else:
raise pyrado.ValueErr(given=self.acq_fcn_type,
eq_constraint="'UCB', 'EI', 'PI'")
# Optimize acquisition function and get new candidate point
cand, acq_value = optimize_acqf(
acq_function=acq_fcn,
bounds=to.stack([to.zeros(self.cand_dim),
to.ones(self.cand_dim)]),
q=1,
num_restarts=self.acq_restarts,
raw_samples=self.acq_samples)
next_cand = self.uc_normalizer.project_back(cand)
print_cbt(f'Found the next candidate: {next_cand.numpy()}', 'g')
self.cands = to.cat([self.cands, next_cand], dim=0)
to.save(self.cands, osp.join(self._save_dir, 'candidates.pt'))
# Train and valuate the new candidate (saves to iter_{self._curr_iter}_policy.pt)
prefix = f'iter_{self._curr_iter}'
wrapped_trn_fcn = until_thold_exceeded(
self.thold_succ_subroutine.item(),
max_iter=self.max_subroutine_rep)(self.train_policy_sim)
wrapped_trn_fcn(cand, prefix)
# Evaluate the current policy on the target domain
policy = to.load(osp.join(self._save_dir, f'{prefix}_policy.pt'))
self.curr_cand_value = self.eval_policy(self._save_dir, self._env_real,
policy,
self.montecarlo_estimator,
prefix,
self.num_eval_rollouts_real)
self.cands_values = to.cat(
[self.cands_values,
self.curr_cand_value.view(1)], dim=0)
to.save(self.cands_values,
osp.join(self._save_dir, 'candidates_values.pt'))
# Store the argmax after training and evaluating
curr_argmax_cand = BayRn.argmax_posterior_mean(
self.cands, self.cands_values.unsqueeze(1), self.uc_normalizer,
self.acq_restarts, self.acq_samples)
self.argmax_cand = to.cat([self.argmax_cand, curr_argmax_cand], dim=0)
to.save(self.argmax_cand,
osp.join(self._save_dir, 'candidates_argmax.pt'))
self.make_snapshot(snapshot_mode, float(to.mean(self.cands_values)),
meta_info)
def gp_fit_test(x_train: Tensor,
y_train: Tensor,
error_train: Tensor,
x_test: Tensor,
y_test: Tensor,
error_test: Tensor,
gp_obj_model: SingleTaskGP,
gp_error_model: SingleTaskGP,
tkwargs: Dict[str, Any],
gp_test_folder: str,
obj_out_wp: bool = False,
err_out_wp: bool = False) -> None:
"""
1) Estimates mean test error between predicted and the true objective function values.
2) Estimates mean test error between predicted recon. error by the gp_model and the true recon. error of the vae_model.
:param x_train: normalised points at which the gps were trained
:param y_train: objective value function corresponding to x_train that were used as targets of `gp_obj_model`
:param error_train: reconstruction error value at points x_train that were used as targets of `gp_error_model`
:param x_test: normalised test points
:param y_test: objective value function corresponding to x_test
:param error_test: reconstruction error at test points
:param gp_obj_model: the gp model trained to predict the black box objective function values
:param gp_error_model: the gp model trained to predict reconstruction error
:param tkwargs: dict of type and device
:param gp_test_folder: folder to save test results
:param obj_out_wp: if the `gp_obj_model` was trained with output warping then need to apply the same transform
:param err_out_wp: if the `gp_error_model` was trained with output warping then need to apply the same transform
:return: (Sum_i||true_y_i - pred_y_i||^2 / n_points, Sum_i||true_recon_i - pred_recon_i||^2 / n_points)
"""
do_robust = True if gp_error_model is not None else False
if not os.path.exists(gp_test_folder):
os.mkdir(gp_test_folder)
gp_obj_model.eval()
gp_obj_model.to(tkwargs['device'])
y_train = y_train.view(-1)
if do_robust:
gp_error_model.eval()
gp_error_model.to(tkwargs['device'])
error_train = error_train.view(-1)
with torch.no_grad():
if obj_out_wp:
Y_numpy = y_train.cpu().numpy()
if Y_numpy.min() <= 0:
y_train = torch.FloatTensor(
power_transform(Y_numpy / Y_numpy.std(),
method='yeo-johnson'))
else:
y_train = torch.FloatTensor(
power_transform(Y_numpy / Y_numpy.std(), method='box-cox'))
if y_train.std() < 0.5:
Y_numpy = y_train.numpy()
y_train = torch.FloatTensor(
power_transform(Y_numpy / Y_numpy.std(),
method='yeo-johnson')).to(x_train)
Y_numpy = y_test.cpu().numpy()
if Y_numpy.min() <= 0:
y_test = torch.FloatTensor(
power_transform(Y_numpy / Y_numpy.std(),
method='yeo-johnson'))
else:
y_test = torch.FloatTensor(
power_transform(Y_numpy / Y_numpy.std(), method='box-cox'))
if y_test.std() < 0.5:
Y_numpy = y_test.numpy()
y_test = torch.FloatTensor(
power_transform(Y_numpy / Y_numpy.std(),
method='yeo-johnson')).to(x_test)
y_train = y_train.view(-1).to(**tkwargs)
y_test = y_test.view(-1).to(**tkwargs)
gp_obj_val_model_mse_train = (
gp_obj_model.posterior(x_train).mean.view(-1) -
y_train).pow(2).div(len(y_train))
gp_obj_val_model_mse_test = (
gp_obj_model.posterior(x_test).mean.view(-1) - y_test).pow(2).div(
len(y_test))
torch.save(
gp_obj_val_model_mse_train,
os.path.join(gp_test_folder, 'gp_obj_val_model_mse_train.npz'))
torch.save(gp_obj_val_model_mse_test,
os.path.join(gp_test_folder, 'gp_obj_val_model_test.npz'))
print(
f'GP training fit on objective value: MSE={gp_obj_val_model_mse_train.sum().item():.5f}'
)
print(
f'GP testing fit on objective value: MSE={gp_obj_val_model_mse_test.sum().item():.5f}'
)
if do_robust:
if err_out_wp:
error_train = error_train.view(-1, 1)
R_numpy = error_train.cpu().numpy()
if R_numpy.min() <= 0:
error_train = torch.FloatTensor(
power_transform(R_numpy / R_numpy.std(),
method='yeo-johnson'))
else:
error_train = torch.FloatTensor(
power_transform(R_numpy / R_numpy.std(),
method='box-cox'))
if error_train.std() < 0.5:
R_numpy = error_train.numpy()
error_train = torch.FloatTensor(
power_transform(R_numpy / R_numpy.std(),
method='yeo-johnson')).to(x_train)
R_numpy = error_test.cpu().numpy()
if R_numpy.min() <= 0:
error_test = torch.FloatTensor(
power_transform(R_numpy / R_numpy.std(),
method='yeo-johnson'))
else:
error_test = torch.FloatTensor(
power_transform(R_numpy / R_numpy.std(),
method='box-cox'))
if error_test.std() < 0.5:
R_numpy = error_test.numpy()
error_test = torch.FloatTensor(
power_transform(R_numpy / R_numpy.std(),
method='yeo-johnson')).to(x_test)
error_train = error_train.view(-1).to(**tkwargs)
error_test = error_test.view(-1).to(**tkwargs)
pred_recon_train = gp_error_model.posterior(x_train).mean.view(-1)
pred_recon_test = gp_error_model.posterior(x_test).mean.view(-1)
gp_error_model_mse_train = (error_train -
pred_recon_train).pow(2).div(
len(error_train))
gp_error_model_mse_test = (error_test -
pred_recon_test).pow(2).div(
len(error_test))
torch.save(
gp_error_model_mse_train,
os.path.join(gp_test_folder, 'gp_error_model_mse_train.npz'))
torch.save(
gp_error_model_mse_test,
os.path.join(gp_test_folder, 'gp_error_model_mse_test.npz'))
print(
f'GP training fit on reconstruction errors: MSE={gp_error_model_mse_train.sum().item():.5f}'
)
print(
f'GP testing fit on reconstruction errors: MSE={gp_error_model_mse_test.sum().item():.5f}'
)
torch.save(error_test,
os.path.join(gp_test_folder, f"true_rec_err_z.pt"))
torch.save(error_train,
os.path.join(gp_test_folder, f"error_train.pt"))
torch.save(x_train, os.path.join(gp_test_folder, f"train_x.pt"))
torch.save(x_test, os.path.join(gp_test_folder, f"test_x.pt"))
torch.save(y_train, os.path.join(gp_test_folder, f"y_train.pt"))
torch.save(x_test, os.path.join(gp_test_folder, f"X_test.pt"))
torch.save(y_test, os.path.join(gp_test_folder, f"y_test.pt"))
# y plots
plt.hist(y_train.cpu().numpy(),
bins=100,
label='y train',
alpha=0.5,
density=True)
plt.hist(gp_obj_model.posterior(x_train).mean.view(
-1).detach().cpu().numpy(),
bins=100,
label='y pred',
alpha=0.5,
density=True)
plt.legend()
plt.title('Training set')
plt.savefig(os.path.join(gp_test_folder, 'gp_obj_train.pdf'))
plt.close()
plt.hist(gp_obj_val_model_mse_train.detach().cpu().numpy(),
bins=100,
alpha=0.5,
density=True)
plt.title('MSE of gp_obj_val model on training set')
plt.savefig(os.path.join(gp_test_folder, 'gp_obj_train_mse.pdf'))
plt.close()
plt.hist(y_test.cpu().numpy(),
bins=100,
label='y true',
alpha=0.5,
density=True)
plt.hist(gp_obj_model.posterior(x_test).mean.detach().cpu().numpy(),
bins=100,
alpha=0.5,
label='y pred',
density=True)
plt.legend()
plt.title('Validation set')
plt.savefig(os.path.join(gp_test_folder, 'gp_obj_test.pdf'))
plt.close()
plt.hist(gp_obj_val_model_mse_test.detach().cpu().numpy(),
bins=100,
alpha=0.5,
density=True)
plt.title('MSE of gp_obj_val model on validation set')
plt.savefig(os.path.join(gp_test_folder, 'gp_obj_test_mse.pdf'))
plt.close()
if do_robust:
# error plots
plt.hist(error_train.cpu().numpy(),
bins=100,
label='error train',
alpha=0.5,
density=True)
plt.hist(
gp_error_model.posterior(x_train).mean.detach().cpu().numpy(),
bins=100,
label='error pred',
alpha=0.5,
density=True)
plt.legend()
plt.title('Training set')
plt.savefig(os.path.join(gp_test_folder, 'gp_error_train.pdf'))
plt.close()
plt.hist(gp_error_model_mse_train.detach().cpu().numpy(),
bins=100,
alpha=0.5,
density=True)
plt.title('MSE of gp_error model on training set')
plt.savefig(os.path.join(gp_test_folder, 'gp_error_train_mse.pdf'))
plt.close()
plt.hist(error_test.cpu().numpy(),
bins=100,
label='error true',
alpha=0.5,
density=True)
plt.hist(
gp_error_model.posterior(x_test).mean.detach().cpu().numpy(),
bins=100,
alpha=0.5,
label='error pred',
density=True)
plt.legend()
plt.title('Validation set')
plt.savefig(os.path.join(gp_test_folder, 'gp_error_test.pdf'))
plt.close()
plt.hist(gp_error_model_mse_test.detach().cpu().numpy(),
bins=100,
alpha=0.5,
density=True)
plt.title('MSE of gp_error model on validation set')
plt.savefig(os.path.join(gp_test_folder, 'gp_error_test_mse.pdf'))
plt.close()
# y-error plots
y_train_sorted, indices_train = torch.sort(y_train)
error_train_sorted = error_train[indices_train]
gp_y_train_pred_sorted, indices_train_pred = torch.sort(
gp_obj_model.posterior(x_train).mean.view(-1))
gp_r_train_pred_sorted = (gp_error_model.posterior(
x_train).mean.view(-1))[indices_train_pred]
plt.scatter(y_train_sorted.cpu().numpy(),
error_train_sorted.cpu().numpy(),
label='true',
marker='+')
plt.scatter(gp_y_train_pred_sorted.detach().cpu().numpy(),
gp_r_train_pred_sorted.detach().cpu().numpy(),
label='pred',
marker='*')
plt.xlabel('y train targets')
plt.ylabel('recon. error train targets')
plt.title('y_train vs. error_train')
plt.legend()
plt.savefig(
os.path.join(gp_test_folder, 'scatter_obj_error_train.pdf'))
plt.close()
y_test_std_sorted, indices_test = torch.sort(y_test)
error_test_sorted = error_test[indices_test]
gp_y_test_pred_sorted, indices_test_pred = torch.sort(
gp_obj_model.posterior(x_test).mean.view(-1))
gp_r_test_pred_sorted = (gp_error_model.posterior(
x_test).mean.view(-1))[indices_test_pred]
plt.scatter(y_test_std_sorted.cpu().numpy(),
error_test_sorted.cpu().numpy(),
label='true',
marker='+')
plt.scatter(gp_y_test_pred_sorted.detach().cpu().numpy(),
gp_r_test_pred_sorted.detach().cpu().numpy(),
label='pred',
marker='*')
plt.xlabel('y test targets')
plt.ylabel('recon. error test targets')
plt.title('y_test vs. error_test')
plt.legend()
plt.savefig(
os.path.join(gp_test_folder, 'scatter_obj_error_test.pdf'))
plt.close()
# error var plots
error_train_sorted, indices_train_pred = torch.sort(error_train)
# error_train_sorted = error_train
# indices_train_pred = np.arange(len(error_train))
gp_r_train_pred_sorted = gp_error_model.posterior(
x_train).mean[indices_train_pred].view(-1)
gp_r_train_pred_std_sorted = gp_error_model.posterior(
x_train).variance.view(-1).sqrt()[indices_train_pred]
plt.scatter(np.arange(len(indices_train_pred)),
error_train_sorted.cpu().numpy(),
label='err true',
marker='+',
color='C1',
s=15)
plt.errorbar(
np.arange(len(indices_train_pred)),
gp_r_train_pred_sorted.detach().cpu().numpy().flatten(),
yerr=gp_r_train_pred_std_sorted.detach().cpu().numpy().flatten(
),
fmt='*',
alpha=0.05,
label='err pred',
color='C0',
ecolor='C0')
plt.scatter(np.arange(len(indices_train_pred)),
gp_r_train_pred_sorted.detach().cpu().numpy(),
marker='*',
alpha=0.2,
s=10,
color='C0')
# plt.scatter(np.arange(len(indices_train_pred)),
# (gp_r_train_pred_sorted + gp_r_train_pred_std_sorted).detach().cpu().numpy(),
# label='err pred mean+std', marker='.')
# plt.scatter(np.arange(len(indices_train_pred)),
# (gp_r_train_pred_sorted - gp_r_train_pred_std_sorted).detach().cpu().numpy(),
# label='err pred mean-std', marker='.')
plt.legend()
plt.title('error predictions and uncertainty on train set')
plt.savefig(
os.path.join(gp_test_folder, 'gp_error_train_uncertainty.pdf'))
plt.close()
error_test_sorted, indices_test_pred = torch.sort(error_test)
# error_test_sorted = error_test
# indices_test_pred = np.arange(len(error_test_sorted))
gp_r_test_pred_sorted = gp_error_model.posterior(x_test).mean.view(
-1)[indices_test_pred]
gp_r_test_pred_std_sorted = gp_error_model.posterior(
x_test).variance.view(-1).sqrt()[indices_test_pred]
plt.scatter(np.arange(len(indices_test_pred)),
error_test_sorted.cpu().numpy(),
label='err true',
marker='+',
color='C1',
s=15)
plt.errorbar(
np.arange(len(indices_test_pred)),
gp_r_test_pred_sorted.detach().cpu().numpy().flatten(),
yerr=gp_r_test_pred_std_sorted.detach().cpu().numpy().flatten(
),
marker='*',
alpha=0.05,
label='err pred',
color='C0',
ecolor='C0')
plt.scatter(np.arange(len(indices_test_pred)),
gp_r_test_pred_sorted.detach().cpu().numpy().flatten(),
marker='*',
color='C0',
alpha=0.2,
s=10)
# plt.scatter(np.arange(len(indices_test_pred)),
# (gp_r_test_pred_sorted + gp_r_test_pred_std_sorted).detach().cpu().numpy(),
# label='err pred mean+std', marker='.')
# plt.scatter(np.arange(len(indices_test_pred)),
# (gp_r_test_pred_sorted - gp_r_test_pred_std_sorted).detach().cpu().numpy(),
# label='err pred mean-std', marker='.')
plt.legend()
plt.title('error predictions and uncertainty on test set')
plt.savefig(
os.path.join(gp_test_folder, 'gp_error_test_uncertainty.pdf'))
plt.close()
# y var plots
y_train_std_sorted, indices_train = torch.sort(y_train)
gp_y_train_pred_sorted = gp_obj_model.posterior(
x_train).mean[indices_train].view(-1)
gp_y_train_pred_std_sorted = gp_obj_model.posterior(
x_train).variance.sqrt()[indices_train].view(-1)
plt.scatter(np.arange(len(indices_train)),
y_train_std_sorted.cpu().numpy(),
label='y true',
marker='+',
color='C1',
s=15)
plt.scatter(np.arange(len(indices_train)),
gp_y_train_pred_sorted.detach().cpu().numpy(),
marker='*',
alpha=0.2,
s=10,
color='C0')
plt.errorbar(
np.arange(len(indices_train)),
gp_y_train_pred_sorted.detach().cpu().numpy().flatten(),
yerr=gp_y_train_pred_std_sorted.detach().cpu().numpy().flatten(),
fmt='*',
alpha=0.05,
label='y pred',
color='C0',
ecolor='C0')
# plt.scatter(np.arange(len(indices_train_pred)),
# (gp_y_train_pred_sorted+gp_y_train_pred_std_sorted).detach().cpu().numpy(),
# label='y pred mean+std', marker='.')
# plt.scatter(np.arange(len(indices_train_pred)),
# (gp_y_train_pred_sorted-gp_y_train_pred_std_sorted).detach().cpu().numpy(),
# label='y pred mean-std', marker='.')
plt.legend()
plt.title('y predictions and uncertainty on train set')
plt.savefig(
os.path.join(gp_test_folder, 'gp_obj_val_train_uncertainty.pdf'))
plt.close()
y_test_std_sorted, indices_test = torch.sort(y_test)
gp_y_test_pred_sorted = gp_obj_model.posterior(x_test).mean.view(
-1)[indices_test]
gp_y_test_pred_std_sorted = gp_obj_model.posterior(
x_test).variance.view(-1).sqrt()[indices_test]
plt.scatter(np.arange(len(indices_test)),
y_test_std_sorted.cpu().numpy(),
label='y true',
marker='+',
color='C1',
s=15)
plt.errorbar(
np.arange(len(indices_test)),
gp_y_test_pred_sorted.detach().cpu().numpy().flatten(),
yerr=gp_y_test_pred_std_sorted.detach().cpu().numpy().flatten(),
fmt='*',
alpha=0.05,
label='y pred',
color='C0',
ecolor='C0')
plt.scatter(np.arange(len(indices_test)),
gp_y_test_pred_sorted.detach().cpu().numpy(),
marker='*',
alpha=0.2,
s=10,
color='C0')
# plt.scatter(np.arange(len(indices_test_pred)),
# (gp_y_test_pred_sorted + gp_y_test_pred_std_sorted).detach().cpu().numpy(),
# label='y pred mean+std', marker='.')
# plt.scatter(np.arange(len(indices_test_pred)),
# (gp_y_test_pred_sorted - gp_y_test_pred_std_sorted).detach().cpu().numpy(),
# label='y pred mean-std', marker='.')
plt.legend()
plt.title('y predictions and uncertainty on test set')
plt.savefig(
os.path.join(gp_test_folder, 'gp_obj_val_test_uncertainty.pdf'))
plt.close()
def test_cache_root(self):
sample_cached_path = (
"botorch.acquisition.cached_cholesky.sample_cached_cholesky")
raw_state_dict = {
"likelihood.noise_covar.raw_noise":
torch.tensor([[0.0895], [0.2594]], dtype=torch.float64),
"mean_module.constant":
torch.tensor([[-0.4545], [-0.1285]], dtype=torch.float64),
"covar_module.raw_outputscale":
torch.tensor([1.4876, 1.4897], dtype=torch.float64),
"covar_module.base_kernel.raw_lengthscale":
torch.tensor([[[-0.7202, -0.2868]], [[-0.8794, -1.2877]]],
dtype=torch.float64),
}
# test batched models (e.g. for MCMC)
for train_batch_shape, m, dtype in product(
(torch.Size([]), torch.Size([3])), (1, 2),
(torch.float, torch.double)):
state_dict = deepcopy(raw_state_dict)
for k, v in state_dict.items():
if m == 1:
v = v[0]
if len(train_batch_shape) > 0:
v = v.unsqueeze(0).expand(*train_batch_shape, *v.shape)
state_dict[k] = v
tkwargs = {"device": self.device, "dtype": dtype}
if m == 2:
objective = GenericMCObjective(lambda Y, X: Y.sum(dim=-1))
else:
objective = None
for k, v in state_dict.items():
state_dict[k] = v.to(**tkwargs)
all_close_kwargs = ({
"atol": 1e-1,
"rtol": 0.0,
} if dtype == torch.float else {
"atol": 1e-4,
"rtol": 0.0
})
torch.manual_seed(1234)
train_X = torch.rand(*train_batch_shape, 3, 2, **tkwargs)
train_Y = (
torch.sin(train_X * 2 * pi) +
torch.randn(*train_batch_shape, 3, 2, **tkwargs))[..., :m]
train_Y = standardize(train_Y)
model = SingleTaskGP(
train_X,
train_Y,
)
if len(train_batch_shape) > 0:
X_baseline = train_X[0]
else:
X_baseline = train_X
model.load_state_dict(state_dict, strict=False)
# test sampler with collapse_batch_dims=False
sampler = IIDNormalSampler(5, seed=0, collapse_batch_dims=False)
with self.assertRaises(UnsupportedError):
qNoisyExpectedImprovement(
model=model,
X_baseline=X_baseline,
sampler=sampler,
objective=objective,
prune_baseline=False,
cache_root=True,
)
sampler = IIDNormalSampler(5, seed=0)
torch.manual_seed(0)
acqf = qNoisyExpectedImprovement(
model=model,
X_baseline=X_baseline,
sampler=sampler,
objective=objective,
prune_baseline=False,
cache_root=True,
)
orig_base_samples = acqf.base_sampler.base_samples.detach().clone()
sampler2 = IIDNormalSampler(5, seed=0)
sampler2.base_samples = orig_base_samples
torch.manual_seed(0)
acqf_no_cache = qNoisyExpectedImprovement(
model=model,
X_baseline=X_baseline,
sampler=sampler2,
objective=objective,
prune_baseline=False,
cache_root=False,
)
for q, batch_shape in product(
(1, 3), (torch.Size([]), torch.Size([3]), torch.Size([4, 3]))):
test_X = (0.3 +
0.05 * torch.randn(*batch_shape, q, 2, **tkwargs)
).requires_grad_(True)
with mock.patch(
sample_cached_path,
wraps=sample_cached_cholesky) as mock_sample_cached:
torch.manual_seed(0)
val = acqf(test_X)
mock_sample_cached.assert_called_once()
val.sum().backward()
base_samples = acqf.sampler.base_samples.detach().clone()
X_grad = test_X.grad.clone()
test_X2 = test_X.detach().clone().requires_grad_(True)
acqf_no_cache.sampler.base_samples = base_samples
with mock.patch(
sample_cached_path,
wraps=sample_cached_cholesky) as mock_sample_cached:
torch.manual_seed(0)
val2 = acqf_no_cache(test_X2)
mock_sample_cached.assert_not_called()
self.assertTrue(torch.allclose(val, val2, **all_close_kwargs))
val2.sum().backward()
self.assertTrue(
torch.allclose(X_grad, test_X2.grad, **all_close_kwargs))
# test we fall back to standard sampling for
# ill-conditioned covariances
acqf._baseline_L = torch.zeros_like(acqf._baseline_L)
with warnings.catch_warnings(
record=True) as ws, settings.debug(True):
with torch.no_grad():
acqf(test_X)
self.assertEqual(len(ws), 1)
self.assertTrue(issubclass(ws[-1].category, BotorchWarning))
def test_gen_value_function_initial_conditions(self):
num_fantasies = 2
num_solutions = 3
num_restarts = 4
raw_samples = 5
n_train = 6
dim = 2
dtype = torch.float
# run a thorough test with dtype float
train_X = torch.rand(n_train, dim, device=self.device, dtype=dtype)
train_Y = torch.rand(n_train, 1, device=self.device, dtype=dtype)
model = SingleTaskGP(train_X, train_Y)
fant_X = torch.rand(num_solutions,
1,
dim,
device=self.device,
dtype=dtype)
fantasy_model = model.fantasize(fant_X,
IIDNormalSampler(num_fantasies))
bounds = torch.tensor([[0, 0], [1, 1]],
device=self.device,
dtype=dtype)
value_function = PosteriorMean(fantasy_model)
# test option error
with self.assertRaises(ValueError):
gen_value_function_initial_conditions(
acq_function=value_function,
bounds=bounds,
num_restarts=num_restarts,
raw_samples=raw_samples,
current_model=model,
options={"frac_random": 2.0},
)
# test output shape
ics = gen_value_function_initial_conditions(
acq_function=value_function,
bounds=bounds,
num_restarts=num_restarts,
raw_samples=raw_samples,
current_model=model,
)
self.assertEqual(
ics.shape,
torch.Size([num_restarts, num_fantasies, num_solutions, 1, dim]))
# test bounds
self.assertTrue(torch.all(ics >= bounds[0]))
self.assertTrue(torch.all(ics <= bounds[1]))
# test dtype
self.assertEqual(dtype, ics.dtype)
# minimal test cases for when all raw samples are random, with dtype double
dtype = torch.double
n_train = 2
dim = 1
num_solutions = 1
train_X = torch.rand(n_train, dim, device=self.device, dtype=dtype)
train_Y = torch.rand(n_train, 1, device=self.device, dtype=dtype)
model = SingleTaskGP(train_X, train_Y)
fant_X = torch.rand(1, 1, dim, device=self.device, dtype=dtype)
fantasy_model = model.fantasize(fant_X,
IIDNormalSampler(num_fantasies))
bounds = torch.tensor([[0], [1]], device=self.device, dtype=dtype)
value_function = PosteriorMean(fantasy_model)
ics = gen_value_function_initial_conditions(
acq_function=value_function,
bounds=bounds,
num_restarts=1,
raw_samples=1,
current_model=model,
options={"frac_random": 0.99},
)
self.assertEqual(ics.shape,
torch.Size([1, num_fantasies, num_solutions, 1, dim]))
# test bounds
self.assertTrue(torch.all(ics >= bounds[0]))
self.assertTrue(torch.all(ics <= bounds[1]))
# test dtype
self.assertEqual(dtype, ics.dtype)
def testSubsetModel(self):
x = torch.zeros(1, 1)
y = torch.rand(1, 2)
obj_t = torch.rand(2)
model = SingleTaskGP(x, y)
self.assertEqual(model.num_outputs, 2)
# basic test, can subset
obj_weights = torch.tensor([1.0, 0.0])
subset_model_results = subset_model(model, obj_weights)
model_sub = subset_model_results.model
obj_weights_sub = subset_model_results.objective_weights
ocs_sub = subset_model_results.outcome_constraints
obj_t_sub = subset_model_results.objective_thresholds
self.assertIsNone(ocs_sub)
self.assertIsNone(obj_t_sub)
self.assertEqual(model_sub.num_outputs, 1)
self.assertTrue(torch.equal(obj_weights_sub, torch.tensor([1.0])))
# basic test, cannot subset
obj_weights = torch.tensor([1.0, 2.0])
subset_model_results = subset_model(model, obj_weights)
model_sub = subset_model_results.model
obj_weights_sub = subset_model_results.objective_weights
ocs_sub = subset_model_results.outcome_constraints
obj_t_sub = subset_model_results.objective_thresholds
self.assertIsNone(ocs_sub)
self.assertIsNone(obj_t_sub)
self.assertIs(model_sub, model) # check identity
self.assertIs(obj_weights_sub, obj_weights) # check identity
self.assertTrue(
torch.equal(subset_model_results.indices, torch.tensor([0, 1])))
# test w/ outcome constraints, can subset
obj_weights = torch.tensor([1.0, 0.0])
ocs = (torch.tensor([[1.0, 0.0]]), torch.tensor([1.0]))
subset_model_results = subset_model(model, obj_weights, ocs)
model_sub = subset_model_results.model
obj_weights_sub = subset_model_results.objective_weights
ocs_sub = subset_model_results.outcome_constraints
obj_t_sub = subset_model_results.objective_thresholds
self.assertEqual(model_sub.num_outputs, 1)
self.assertIsNone(obj_t_sub)
self.assertTrue(torch.equal(obj_weights_sub, torch.tensor([1.0])))
self.assertTrue(torch.equal(ocs_sub[0], torch.tensor([[1.0]])))
self.assertTrue(torch.equal(ocs_sub[1], torch.tensor([1.0])))
self.assertTrue(
torch.equal(subset_model_results.indices, torch.tensor([0])))
# test w/ outcome constraints, cannot subset
obj_weights = torch.tensor([1.0, 0.0])
ocs = (torch.tensor([[0.0, 1.0]]), torch.tensor([1.0]))
subset_model_results = subset_model(model, obj_weights, ocs)
model_sub = subset_model_results.model
obj_weights_sub = subset_model_results.objective_weights
ocs_sub = subset_model_results.outcome_constraints
obj_t_sub = subset_model_results.objective_thresholds
self.assertIs(model_sub, model) # check identity
self.assertIsNone(obj_t_sub)
self.assertIs(obj_weights_sub, obj_weights) # check identity
self.assertIs(ocs_sub, ocs) # check identity
self.assertTrue(
torch.equal(subset_model_results.indices, torch.tensor([0, 1])))
# test w/ objective thresholds, cannot subset
obj_weights = torch.tensor([1.0, 0.0])
ocs = (torch.tensor([[0.0, 1.0]]), torch.tensor([1.0]))
subset_model_results = subset_model(model, obj_weights, ocs, obj_t)
model_sub = subset_model_results.model
obj_weights_sub = subset_model_results.objective_weights
ocs_sub = subset_model_results.outcome_constraints
obj_t_sub = subset_model_results.objective_thresholds
self.assertIs(model_sub, model) # check identity
self.assertIs(obj_t, obj_t_sub)
self.assertIs(obj_weights_sub, obj_weights) # check identity
self.assertTrue(
torch.equal(subset_model_results.indices, torch.tensor([0, 1])))
self.assertIs(ocs_sub, ocs) # check identity
# test w/ objective thresholds, can subset
obj_weights = torch.tensor([1.0, 0.0])
ocs = (torch.tensor([[1.0, 0.0]]), torch.tensor([1.0]))
subset_model_results = subset_model(model, obj_weights, ocs, obj_t)
model_sub = subset_model_results.model
obj_weights_sub = subset_model_results.objective_weights
ocs_sub = subset_model_results.outcome_constraints
obj_t_sub = subset_model_results.objective_thresholds
self.assertTrue(
torch.equal(subset_model_results.indices, torch.tensor([0])))
self.assertEqual(model_sub.num_outputs, 1)
self.assertTrue(torch.equal(obj_weights_sub, torch.tensor([1.0])))
self.assertTrue(torch.equal(obj_t_sub, obj_t[:1]))
self.assertTrue(torch.equal(ocs_sub[0], torch.tensor([[1.0]])))
self.assertTrue(torch.equal(ocs_sub[1], torch.tensor([1.0])))
# test unsupported
yvar = torch.ones(1, 2)
model = HeteroskedasticSingleTaskGP(x, y, yvar)
subset_model_results = subset_model(model, obj_weights)
model_sub = subset_model_results.model
obj_weights_sub = subset_model_results.objective_weights
ocs_sub = subset_model_results.outcome_constraints
obj_t_sub = subset_model_results.objective_thresholds
self.assertIsNone(ocs_sub)
self.assertIs(model_sub, model) # check identity
self.assertIs(obj_weights_sub, obj_weights) # check identity
self.assertTrue(
torch.equal(subset_model_results.indices, torch.tensor([0, 1])))
# test error on size inconsistency
obj_weights = torch.ones(3)
with self.assertRaises(RuntimeError):
subset_model(model, obj_weights)
def fit(self, X: DataSet, y: DataSet, **kwargs):
"""Train model and take spectral samples"""
from botorch.models import SingleTaskGP
from botorch.fit import fit_gpytorch_model
from gpytorch.mlls.exact_marginal_log_likelihood import (
ExactMarginalLogLikelihood, )
import pyrff
import torch
self.input_columns_ordered = X.columns
# Convert to tensors
X_np = X.to_numpy().astype(float)
y_np = y.to_numpy().astype(float)
X = torch.from_numpy(X_np)
y = torch.from_numpy(y_np)
# Train the GP model
self.model = SingleTaskGP(X, y)
mll = ExactMarginalLogLikelihood(self.model.likelihood, self.model)
fit_gpytorch_model(mll)
# self.logger.info model hyperparameters
if self.model_name is None:
self.model_name = self.output_columns_ordered[0]
self.lengthscales_ = self.model.covar_module.base_kernel.lengthscale.detach(
)[0].numpy()
self.outputscale_ = self.model.covar_module.outputscale.detach().numpy(
)
self.noise_ = self.model.likelihood.noise_covar.noise.detach().numpy(
)[0]
self.logger.debug(
f"Model {self.model_name} lengthscales: {self.lengthscales_}")
self.logger.debug(
f"Model {self.model_name} variance: {self.outputscale_}")
self.logger.debug(f"Model {self.model_name} noise: {self.noise_}")
# Spectral sampling
n_spectral_points = kwargs.get("n_spectral_points", 1500)
n_retries = kwargs.get("n_retries", 10)
self.logger.debug(
f"Spectral sampling {self.model_name} with {n_spectral_points} spectral points."
)
self.rff = None
nu = self.model.covar_module.base_kernel.nu
for _ in range(n_retries):
try:
self.rff = pyrff.sample_rff(
lengthscales=self.lengthscales_,
scaling=np.sqrt(self.outputscale_),
noise=self.noise_,
kernel_nu=nu,
X=X_np,
Y=y_np[:, 0],
M=n_spectral_points,
)
break
except np.linalg.LinAlgError as e:
self.logger.error(e)
except ValueError as e:
self.logger.error(e)
if self.rff is None:
raise RuntimeError(
f"Spectral sampling failed after {n_retries} retries.")
return dict(
name=self.model_name,
rff=self.rff,
lengthscales=self.lengthscales_,
outputscale=self.outputscale_,
noise=self.noise_,
)
def sample_arch(self, START_BO, g, hyperparams, og_flops, empty_val_loss, full_val_loss, target_flops=0):
if g < START_BO:
if target_flops == 0:
f = np.random.rand(1) * (args.upper_channel-args.lower_channel) + args.lower_channel
else:
f = args.lower_channel
parameterization = np.ones(hyperparams.get_dim()) * f
layer_budget = hyperparams.get_layer_budget_from_parameterization(parameterization, self.mask_pruner)
elif g == START_BO:
if target_flops == 0:
parameterization = np.ones(hyperparams.get_dim())
else:
f = args.lower_channel
parameterization = np.ones(hyperparams.get_dim()) * f
layer_budget = hyperparams.get_layer_budget_from_parameterization(parameterization, self.mask_pruner)
else:
rand = torch.rand(1).cuda()
train_X = torch.FloatTensor(self.X).cuda()
train_Y_loss = torch.FloatTensor(np.array(self.Y)[:, 0].reshape(-1, 1)).cuda()
train_Y_loss = standardize(train_Y_loss)
train_Y_cost = torch.FloatTensor(np.array(self.Y)[:, 1].reshape(-1, 1)).cuda()
train_Y_cost = standardize(train_Y_cost)
covar_module = None
if args.ski and g > 128:
if args.additive:
covar_module = AdditiveStructureKernel(
ScaleKernel(
GridInterpolationKernel(
MaternKernel(
nu=2.5,
lengthscale_prior=GammaPrior(3.0, 6.0),
),
grid_size=128, num_dims=1, grid_bounds=[(0, 1)]
),
outputscale_prior=GammaPrior(2.0, 0.15),
),
num_dims=train_X.shape[1]
)
else:
covar_module = ScaleKernel(
GridInterpolationKernel(
MaternKernel(
nu=2.5,
lengthscale_prior=GammaPrior(3.0, 6.0),
),
grid_size=128, num_dims=train_X.shape[1], grid_bounds=[(0, 1) for _ in range(train_X.shape[1])]
),
outputscale_prior=GammaPrior(2.0, 0.15),
)
else:
if args.additive:
covar_module = AdditiveStructureKernel(
ScaleKernel(
MaternKernel(
nu=2.5,
lengthscale_prior=GammaPrior(3.0, 6.0),
num_dims=1
),
outputscale_prior=GammaPrior(2.0, 0.15),
),
num_dims=train_X.shape[1]
)
else:
covar_module = ScaleKernel(
MaternKernel(
nu=2.5,
lengthscale_prior=GammaPrior(3.0, 6.0),
num_dims=train_X.shape[1]
),
outputscale_prior=GammaPrior(2.0, 0.15),
)
new_train_X = train_X
gp_loss = SingleTaskGP(new_train_X, train_Y_loss, covar_module=covar_module)
mll = ExactMarginalLogLikelihood(gp_loss.likelihood, gp_loss)
mll = mll.to('cuda')
fit_gpytorch_model(mll)
# Use add-gp for cost
covar_module = AdditiveStructureKernel(
ScaleKernel(
MaternKernel(
nu=2.5,
lengthscale_prior=GammaPrior(3.0, 6.0),
num_dims=1
),
outputscale_prior=GammaPrior(2.0, 0.15),
),
num_dims=train_X.shape[1]
)
gp_cost = SingleTaskGP(new_train_X, train_Y_cost, covar_module=covar_module)
mll = ExactMarginalLogLikelihood(gp_cost.likelihood, gp_cost)
mll = mll.to('cuda')
fit_gpytorch_model(mll)
UCB_loss = UpperConfidenceBound(gp_loss, beta=args.beta).cuda()
UCB_cost = UpperConfidenceBound(gp_cost, beta=args.beta).cuda()
self.mobo_obj = RandAcquisition(UCB_loss).cuda()
self.mobo_obj.setup(UCB_loss, UCB_cost, rand)
lower = torch.ones(new_train_X.shape[1])*args.lower_channel
upper = torch.ones(new_train_X.shape[1])*args.upper_channel
self.mobo_bounds = torch.stack([lower, upper]).cuda()
if args.pas:
val = np.linspace(args.lower_flops, 1, 50)
chosen_target_flops = np.random.choice(val, p=(self.sampling_weights/np.sum(self.sampling_weights)))
lower_bnd, upper_bnd = 0, 1
lmda = 0.5
for i in range(10):
self.mobo_obj.rand = lmda
parameterization, acq_value = optimize_acqf(
self.mobo_obj, bounds=self.mobo_bounds, q=1, num_restarts=5, raw_samples=1000,
)
parameterization = parameterization[0].cpu().numpy()
layer_budget = hyperparams.get_layer_budget_from_parameterization(parameterization, self.mask_pruner)
sim_flops = self.mask_pruner.simulate_and_count_flops(layer_budget, self.use_mem)
ratio = sim_flops/og_flops
if np.abs(ratio - chosen_target_flops) <= 0.02:
break
if args.baseline > 0:
if ratio < chosen_target_flops:
lower_bnd = lmda
lmda = (lmda + upper_bnd) / 2
elif ratio > chosen_target_flops:
upper_bnd = lmda
lmda = (lmda + lower_bnd) / 2
else:
if ratio < chosen_target_flops:
upper_bnd = lmda
lmda = (lmda + lower_bnd) / 2
elif ratio > chosen_target_flops:
lower_bnd = lmda
lmda = (lmda + upper_bnd) / 2
rand[0] = lmda
writer.add_scalar('Binary search trials', i, g)
else:
parameterization, acq_value = optimize_acqf(
self.mobo_obj, bounds=self.mobo_bounds, q=1, num_restarts=5, raw_samples=1000,
)
parameterization = parameterization[0].cpu().numpy()
layer_budget = hyperparams.get_layer_budget_from_parameterization(parameterization, self.mask_pruner)
return layer_budget, parameterization, self.sampling_weights/np.sum(self.sampling_weights)
def testSubsetModel(self):
x = torch.zeros(1, 1)
y = torch.rand(1, 2)
Ys = [y[:, :1], y[:, 1:]]
model = SingleTaskGP(x, y)
self.assertEqual(model.num_outputs, 2)
# basic test, can subset
obj_weights = torch.tensor([1.0, 0.0])
model_sub, obj_weights_sub, ocs_sub, Ys_sub = subset_model(
model, obj_weights, Ys=Ys
)
self.assertIsNone(ocs_sub)
self.assertEqual(model_sub.num_outputs, 1)
self.assertTrue(torch.equal(obj_weights_sub, torch.tensor([1.0])))
self.assertEqual(Ys_sub[0], Ys[0])
self.assertEqual(len(Ys_sub), 1)
# basic test, cannot subset
obj_weights = torch.tensor([1.0, 2.0])
model_sub, obj_weights_sub, ocs_sub, Ys_sub = subset_model(
model, obj_weights, Ys=Ys
)
self.assertIsNone(ocs_sub)
self.assertIs(model_sub, model) # check identity
self.assertIs(obj_weights_sub, obj_weights) # check identity
self.assertIs(Ys_sub, Ys)
# test w/ outcome constraints, can subset
obj_weights = torch.tensor([1.0, 0.0])
ocs = (torch.tensor([[1.0, 0.0]]), torch.tensor([1.0]))
model_sub, obj_weights_sub, ocs_sub, Ys_sub = subset_model(
model, obj_weights, ocs, Ys
)
self.assertEqual(model_sub.num_outputs, 1)
self.assertTrue(torch.equal(obj_weights_sub, torch.tensor([1.0])))
self.assertTrue(torch.equal(ocs_sub[0], torch.tensor([[1.0]])))
self.assertTrue(torch.equal(ocs_sub[1], torch.tensor([1.0])))
self.assertIs(Ys_sub[0], Ys[0])
self.assertEqual(len(Ys_sub), 1)
# test w/ outcome constraints, cannot subset
obj_weights = torch.tensor([1.0, 0.0])
ocs = (torch.tensor([[0.0, 1.0]]), torch.tensor([1.0]))
model_sub, obj_weights_sub, ocs_sub, Ys_sub = subset_model(
model, obj_weights, ocs, Ys
)
self.assertIs(model_sub, model) # check identity
self.assertIs(obj_weights_sub, obj_weights) # check identity
self.assertIs(ocs_sub, ocs) # check identity
self.assertIs(Ys_sub, Ys)
# test unsupported
yvar = torch.ones(1, 2)
model = HeteroskedasticSingleTaskGP(x, y, yvar)
model_sub, obj_weights_sub, ocs, Ys_sub = subset_model(
model, obj_weights, Ys=Ys
)
self.assertIsNone(ocs)
self.assertIs(model_sub, model) # check identity
self.assertIs(obj_weights_sub, obj_weights) # check identity
self.assertIs(Ys_sub, Ys)
# test error on size inconsistency
obj_weights = torch.ones(3)
with self.assertRaises(RuntimeError):
subset_model(model, obj_weights, Ys=Ys)
def suggest_experiments(self,
num_experiments,
prev_res: DataSet = None,
**kwargs):
from botorch.models import SingleTaskGP
from botorch.fit import fit_gpytorch_model
from botorch.optim import optimize_acqf
from torch import tensor
from gpytorch.mlls.exact_marginal_log_likelihood import (
ExactMarginalLogLikelihood, )
# Suggest lhs initial design or append new experiments to previous experiments
if prev_res is None:
lhs = LHS(self.domain)
self.iterations += 1
k = num_experiments if num_experiments > 1 else 2
conditions = lhs.suggest_experiments(k)
return conditions
elif prev_res is not None and self.all_experiments is None:
self.all_experiments = prev_res
elif prev_res is not None and self.all_experiments is not None:
self.all_experiments = self.all_experiments.append(prev_res)
self.iterations += 1
data = self.all_experiments
# Get inputs (decision variables) and outputs (objectives)
inputs, output = self.transform.transform_inputs_outputs(
data,
categorical_method=self.categorical_method,
standardize_inputs=True,
standardize_outputs=True,
)
# Train model
model = SingleTaskGP(
torch.tensor(inputs.data_to_numpy()).float(),
torch.tensor(output.data_to_numpy()).float(),
)
mll = ExactMarginalLogLikelihood(model.likelihood, model)
fit_gpytorch_model(mll)
# Create acquisition function
objective = self.domain.output_variables[0]
if objective.maximize:
fbest_scaled = output.max()[objective.name]
maximize = True
else:
fbest_scaled = output.min()[objective.name]
maximize = False
ei = CategoricalEI(self.domain,
model,
best_f=fbest_scaled,
maximize=maximize)
# Optimize acquisition function
results, acq_values = optimize_acqf(
acq_function=ei,
bounds=self._get_bounds(),
num_restarts=20,
q=num_experiments,
raw_samples=100,
)
# Convert result to datset
result = DataSet(
results.detach().numpy(),
columns=inputs.data_columns,
)
# Untransform
result = self.transform.un_transform(
result,
categorical_method=self.categorical_method,
standardize_inputs=True)
# Add metadata
result[("strategy", "METADATA")] = "STBO"
return result
def gp_torch_train(train_x: Tensor,
train_y: Tensor,
n_inducing_points: int,
tkwargs: Dict[str, Any],
init,
scale: bool,
covar_name: str,
gp_file: Optional[str],
save_file: str,
input_wp: bool,
outcome_transform: Optional[OutcomeTransform] = None,
options: Dict[str, Any] = None) -> SingleTaskGP:
assert train_y.ndim > 1, train_y.shape
assert gp_file or init, (gp_file, init)
likelihood = gpytorch.likelihoods.GaussianLikelihood()
if init:
# build hyp
print("Initialize GP hparams...")
print("Doing Kmeans init...")
assert n_inducing_points > 0, n_inducing_points
kmeans = MiniBatchKMeans(n_clusters=n_inducing_points,
batch_size=min(10000, train_x.shape[0]),
n_init=25)
start_time = time.time()
kmeans.fit(train_x.cpu().numpy())
end_time = time.time()
print(f"K means took {end_time - start_time:.1f}s to finish...")
inducing_points = torch.from_numpy(kmeans.cluster_centers_.copy())
output_scale = None
if scale:
output_scale = train_y.var().item()
lscales = torch.empty(1, train_x.shape[1])
for i in range(train_x.shape[1]):
lscales[0, i] = torch.pdist(train_x[:, i].view(
-1, 1)).median().clamp(min=0.01)
base_covar_module = query_covar(covar_name=covar_name,
scale=scale,
outputscale=output_scale,
lscales=lscales)
covar_module = InducingPointKernel(base_covar_module,
inducing_points=inducing_points,
likelihood=likelihood)
input_warp_tf = None
if input_wp:
# Apply input warping
# initialize input_warping transformation
input_warp_tf = CustomWarp(
indices=list(range(train_x.shape[-1])),
# use a prior with median at 1.
# when a=1 and b=1, the Kumaraswamy CDF is the identity function
concentration1_prior=LogNormalPrior(0.0, 0.75**0.5),
concentration0_prior=LogNormalPrior(0.0, 0.75**0.5),
)
model = SingleTaskGP(train_x,
train_y,
covar_module=covar_module,
likelihood=likelihood,
input_transform=input_warp_tf,
outcome_transform=outcome_transform)
else:
# load model
output_scale = 1 # will be overwritten when loading model
lscales = torch.ones(
train_x.shape[1]) # will be overwritten when loading model
base_covar_module = query_covar(covar_name=covar_name,
scale=scale,
outputscale=output_scale,
lscales=lscales)
covar_module = InducingPointKernel(base_covar_module,
inducing_points=torch.empty(
n_inducing_points,
train_x.shape[1]),
likelihood=likelihood)
input_warp_tf = None
if input_wp:
# Apply input warping
# initialize input_warping transformation
input_warp_tf = Warp(
indices=list(range(train_x.shape[-1])),
# use a prior with median at 1.
# when a=1 and b=1, the Kumaraswamy CDF is the identity function
concentration1_prior=LogNormalPrior(0.0, 0.75**0.5),
concentration0_prior=LogNormalPrior(0.0, 0.75**0.5),
)
model = SingleTaskGP(train_x,
train_y,
covar_module=covar_module,
likelihood=likelihood,
input_transform=input_warp_tf,
outcome_transform=outcome_transform)
print("Loading GP from file")
state_dict = torch.load(gp_file)
model.load_state_dict(state_dict)
print("GP regression")
start_time = time.time()
model.to(**tkwargs)
model.train()
mll = ExactMarginalLogLikelihood(model.likelihood, model)
# set approx_mll to False since we are using an exact marginal log likelihood
# fit_gpytorch_model(mll, optimizer=fit_gpytorch_torch, approx_mll=False, options=options)
fit_gpytorch_torch(mll,
options=options,
approx_mll=False,
clip_by_value=True if input_wp else False,
clip_value=10.0)
end_time = time.time()
print(f"Regression took {end_time - start_time:.1f}s to finish...")
print("Save GP model...")
torch.save(model.state_dict(), save_file)
print("Done training of GP.")
model.eval()
return model
import torch
from botorch.models import SingleTaskGP
from botorch.fit import fit_gpytorch_model
from botorch.utils import standardize
from gpytorch.mlls import ExactMarginalLogLikelihood
from botorch.acquisition import UpperConfidenceBound
from botorch.optim import optimize_acqf
# Training data:
train_X = torch.rand(10, 2)
Y = 1 - torch.norm(train_X - 0.5, dim=-1, keepdim=True)
Y = Y + 0.1 * torch.randn_like(Y) # add some noise
train_Y = standardize(Y)
# Fir the model:
gp = SingleTaskGP(train_X, train_Y)
mll = ExactMarginalLogLikelihood(gp.likelihood, gp)
fit_gpytorch_model(mll)
print(mll)
# Construct acquisition function:
UCB = UpperConfidenceBound(gp, beta=0.1)
print(UCB)
bounds = torch.stack([torch.zeros(2), torch.ones(2)])
candidate, acq_value = optimize_acqf(
UCB,
bounds=bounds,
q=1,
def fairBO_debiasing(model_state_dict, data, config, device):
def evaluate(lr, beta1, beta2, alpha, T0, verbose=False):
model = load_model(data.num_features,
config.get('hyperparameters', {}))
model.load_state_dict(model_state_dict)
model.to(device)
loss_fn = torch.nn.BCELoss()
optimizer = optim.Adam(model.parameters(),
lr=lr,
betas=(beta1, beta2),
weight_decay=alpha)
scheduler = optim.lr_scheduler.CosineAnnealingWarmRestarts(
optimizer, int(T0))
for epoch in range(201):
model.train()
batch_idxs = torch.split(torch.randperm(data.X_valid.size(0)), 64)
train_loss = 0
for batch in batch_idxs:
X = data.X_valid_gpu[batch, :]
y = data.y_valid_gpu[batch]
optimizer.zero_grad()
loss = loss_fn(model(X)[:, 0], y)
loss.backward()
train_loss += loss.item()
optimizer.step()
scheduler.step(X.size(0))
if epoch % 10 == 0 and verbose:
model.eval()
with torch.no_grad():
valid_loss = loss_fn(
model(data.X_valid_valid.to(device))[:, 0],
data.y_valid_valid.to(device))
print(
f'=======> Epoch: {epoch} Train loss: {train_loss / len(batch_idxs)} '
f'Valid loss: {valid_loss}')
model.eval()
with torch.no_grad():
scores = model(data.X_valid_gpu)[:, 0].reshape(-1).cpu().numpy()
best_thresh, _ = get_best_thresh(scores,
np.linspace(0, 1, 1001),
data,
config,
valid=False,
margin=config['fairBO']['margin'])
return get_valid_objective(scores > best_thresh,
data,
config,
valid=False), model, best_thresh
space = config['fairBO']['hyperparameters']
search_space = {}
bounds_dict = {}
for var in space:
search_space[var] = np.arange(space[var]['start'], space[var]['end'],
space[var]['step'])
bounds_dict[var] = torch.tensor(
[space[var]['start'], space[var]['end']])
if space[var]['log_scale']:
search_space[var] = np.exp(np.log(10) * search_space[var])
bounds_dict[var] = torch.exp(float(np.log(10)) * bounds_dict[var])
def sample_space():
return {
var: np.random.choice(rng)
for var, rng in search_space.items()
}
X_hyp = []
y_hyp = []
best_model = [None, -math.inf, -1]
for it in range(config['fairBO']['initial_budget']):
X_hyp.append(sample_space())
logger.info(
f'(Iteration {it}) Evaluating fairBO with sample {X_hyp[-1]}')
y_eval, model_candidate, thresh = evaluate(**X_hyp[-1])
logger.info(f'Result: {y_eval}')
if y_eval['objective'] > best_model[1]:
best_model[0] = copy.deepcopy(model_candidate)
best_model[1] = y_eval['objective']
best_model[2] = thresh
y_hyp.append(y_eval)
X_df = pd.DataFrame(X_hyp)
X = torch.tensor(X_df.to_numpy())
y = torch.tensor(pd.DataFrame(y_hyp)[['performance', 'bias']].to_numpy())
for it in range(config['fairBO']['total_budget'] -
config['fairBO']['initial_budget']):
xscaler = StandardScaler()
gp = SingleTaskGP(torch.tensor(xscaler.fit_transform(X)), y)
mll = ExactMarginalLogLikelihood(gp.likelihood, gp)
fit_gpytorch_model(mll)
cEI = ConstrainedExpectedImprovement(gp, y[:, 0].max().item(), 0,
{1: (-0.05, 0.05)})
bounds = torch.stack([bounds_dict[x] for x in X_df.columns])
candidate, _ = optimize_acqf(cEI, bounds.T, 1, 100, 1024)
inv_candidate = xscaler.inverse_transform(candidate)
hyp = {k: v.item() for k, v in zip(X_df.columns, inv_candidate[0])}
logger.info(
f'(Iteration {it+config["fairBO"]["initial_budget"]}) Evaluating fairBO with sample {hyp}'
)
X = torch.cat((X, candidate))
y_eval, model_candidate, thresh = evaluate(**hyp)
logger.info(f'Result: {y_eval}')
if y_eval['objective'] > best_model[1]:
best_model[0] = copy.deepcopy(model_candidate)
best_model[1] = y_eval['objective']
best_model[2] = thresh
y = torch.cat(
(y, torch.tensor([[y_eval['performance'], y_eval['bias']]])))
logger.info('Evaluating best fairBO debiased model.')
best_model[0].eval()
with torch.no_grad():
y_pred = (best_model[0](data.X_valid_gpu)[:, 0] >
best_model[2]).reshape(-1).cpu().numpy()
results_valid = get_valid_objective(y_pred, data, config)
logger.info(f'Results: {results_valid}')
best_model[0].eval()
with torch.no_grad():
y_pred = (best_model[0](data.X_test_gpu)[:, 0] >
best_model[2]).reshape(-1).cpu().numpy()
results_test = get_test_objective(y_pred, data, config)
return results_valid, results_test
class ParametricArm:
"""
the class of an Arm
"""
def __init__(
self,
function: SyntheticTestFunction,
num_init_samples: int = 10,
retrain_gp: bool = False,
num_restarts: int = 10,
raw_samples: int = 1000,
):
"""
Initialize the Arm
:param function: the function of the arm to sample from
:param num_init_samples: number of samples to initialize with
:param retrain_gp: retrain the model after each sample if True
:param num_restarts: number of random restarts for acquisition function optimization
:param raw_samples: number of raw samples for acquisition function optimization
"""
self.function = function
self.dim = function.dim
self.bounds = Tensor(function._bounds).t()
self.scale = self.bounds[1] - self.bounds[0]
self.l_bounds = self.bounds[0]
self.num_restarts = num_restarts
self.raw_samples = raw_samples
self._initialize_model(num_init_samples)
self._update_current_best()
self._maximize_kg()
self.retrain_gp = retrain_gp
self.num_samples = num_init_samples
def _maximize_kg(self) -> None:
"""
maximizes the KG acquisition function and stores the resulting value and
the candidate
"""
acq_func = qKnowledgeGradient(
model=self.model, current_value=self.current_best_val
)
# acq_func = qExpectedImprovement(model=self.model, best_f=self.current_best_val)
# acq_func = ExpectedImprovement(model=self.model, best_f=self.current_best_val)
self.next_candidate, self.kg_value = optimize_acqf(
acq_func,
Tensor([[0], [1]]).repeat(1, self.dim),
q=1,
num_restarts=self.num_restarts,
raw_samples=self.raw_samples,
)
def _update_current_best(self) -> None:
"""
Updates the current best solution and corresponding value
"""
pm = PosteriorMean(self.model)
self.current_best_sol, self.current_best_val = optimize_acqf(
pm,
Tensor([[0], [1]]).repeat(1, self.dim),
q=1,
num_restarts=self.num_restarts,
raw_samples=self.raw_samples,
)
def _function_call(self, X: Tensor) -> Tensor:
"""
Scales the solutions to the function domain and returns the function value.
:param X: Solutions from the relative scale of [0, 1]
:return: function value
"""
shape = list(X.size())
shape[-1] = 1
X = X * self.scale.repeat(shape) + self.l_bounds.repeat(shape)
# TODO: adjust for minimization
return -self.function(X).unsqueeze(1)
def _initialize_model(self, num_init_samples: int) -> None:
"""
initialize the GP model with num_init_samples of initial samples
"""
self.train_X = torch.rand((num_init_samples, self.dim))
self.train_Y = self._function_call(self.train_X)
self.model = SingleTaskGP(
self.train_X, self.train_Y, outcome_transform=Standardize(m=1)
)
mll = ExactMarginalLogLikelihood(self.model.likelihood, self.model)
fit_gpytorch_model(mll)
def _update_model(self, new_sample: Tensor, new_observation: Tensor) -> None:
"""
Update the GP model with the new observation(s)
:param new_sample: sampled point
:param new_observation: observed function value
"""
self.train_X = torch.cat((self.train_X, new_sample), 0)
self.train_Y = torch.cat((self.train_Y, new_observation), 0)
self.model = self.model.condition_on_observations(new_sample, new_observation)
if self.retrain_gp:
mll = ExactMarginalLogLikelihood(self.model.likelihood, self.model)
fit_gpytorch_model(mll)
def sample_next(self):
"""
sample the next point, i.e. the point that maximizes KG
update the model and retrain if needed
update the relevant values
"""
Y = self._function_call(self.next_candidate)
self._update_model(self.next_candidate, Y)
self._update_current_best()
self._maximize_kg()
def test_model_list_to_batched(self):
for dtype in (torch.float, torch.double):
# basic test
train_X = torch.rand(10, 2, device=self.device, dtype=dtype)
train_Y1 = train_X.sum(dim=-1, keepdim=True)
train_Y2 = (train_X[:, 0] - train_X[:, 1]).unsqueeze(-1)
gp1 = SingleTaskGP(train_X, train_Y1)
gp2 = SingleTaskGP(train_X, train_Y2)
list_gp = ModelListGP(gp1, gp2)
batch_gp = model_list_to_batched(list_gp)
self.assertIsInstance(batch_gp, SingleTaskGP)
# test degenerate (single model)
batch_gp = model_list_to_batched(ModelListGP(gp1))
self.assertEqual(batch_gp._num_outputs, 1)
# test different model classes
gp2 = FixedNoiseGP(train_X, train_Y1, torch.ones_like(train_Y1))
with self.assertRaises(UnsupportedError):
model_list_to_batched(ModelListGP(gp1, gp2))
# test non-batched models
gp1_ = SimpleGPyTorchModel(train_X, train_Y1)
gp2_ = SimpleGPyTorchModel(train_X, train_Y2)
with self.assertRaises(UnsupportedError):
model_list_to_batched(ModelListGP(gp1_, gp2_))
# test list of multi-output models
train_Y = torch.cat([train_Y1, train_Y2], dim=-1)
gp2 = SingleTaskGP(train_X, train_Y)
with self.assertRaises(UnsupportedError):
model_list_to_batched(ModelListGP(gp1, gp2))
# test different training inputs
gp2 = SingleTaskGP(2 * train_X, train_Y2)
with self.assertRaises(UnsupportedError):
model_list_to_batched(ModelListGP(gp1, gp2))
# check scalar agreement
gp2 = SingleTaskGP(train_X, train_Y2)
gp2.likelihood.noise_covar.noise_prior.rate.fill_(1.0)
with self.assertRaises(UnsupportedError):
model_list_to_batched(ModelListGP(gp1, gp2))
# check tensor shape agreement
gp2 = SingleTaskGP(train_X, train_Y2)
gp2.covar_module.raw_outputscale = torch.nn.Parameter(
torch.tensor([0.0], device=self.device, dtype=dtype)
)
with self.assertRaises(UnsupportedError):
model_list_to_batched(ModelListGP(gp1, gp2))
# test HeteroskedasticSingleTaskGP
gp2 = HeteroskedasticSingleTaskGP(
train_X, train_Y1, torch.ones_like(train_Y1)
)
with self.assertRaises(NotImplementedError):
model_list_to_batched(ModelListGP(gp2))
# test custom likelihood
gp2 = SingleTaskGP(train_X, train_Y2, likelihood=GaussianLikelihood())
with self.assertRaises(NotImplementedError):
model_list_to_batched(ModelListGP(gp2))
# test FixedNoiseGP
train_X = torch.rand(10, 2, device=self.device, dtype=dtype)
train_Y1 = train_X.sum(dim=-1, keepdim=True)
train_Y2 = (train_X[:, 0] - train_X[:, 1]).unsqueeze(-1)
gp1_ = FixedNoiseGP(train_X, train_Y1, torch.rand_like(train_Y1))
gp2_ = FixedNoiseGP(train_X, train_Y2, torch.rand_like(train_Y2))
list_gp = ModelListGP(gp1_, gp2_)
batch_gp = model_list_to_batched(list_gp)
def test_qMS(self):
d = 2
q = 1
num_data = 3
q_batch_sizes = [1, 1, 1]
num_fantasies = [2, 2, 1]
t_batch_size = [2]
for dtype in (torch.float, torch.double):
bounds = torch.tensor([[0], [1]], device=self.device, dtype=dtype)
bounds = bounds.repeat(1, d)
train_X = torch.rand(num_data, d, device=self.device, dtype=dtype)
train_Y = torch.rand(num_data, 1, device=self.device, dtype=dtype)
model = SingleTaskGP(train_X, train_Y)
# default evaluation tests
qMS = qMultiStepLookahead(
model=model,
batch_sizes=[1, 1, 1],
num_fantasies=num_fantasies,
)
q_prime = qMS.get_augmented_q_batch_size(q)
eval_X = torch.rand(t_batch_size + [q_prime, d])
result = qMS(eval_X)
self.assertEqual(result.shape, torch.Size(t_batch_size))
qMS = qMultiStepLookahead(
model=model,
batch_sizes=q_batch_sizes,
valfunc_cls=[qExpectedImprovement] * 4,
valfunc_argfacs=[make_best_f] * 4,
num_fantasies=num_fantasies,
inner_mc_samples=[2] * 4,
)
result = qMS(eval_X)
self.assertEqual(result.shape, torch.Size(t_batch_size))
# get induced fantasy model, with collapse_fantasy_base_samples
fant_model = qMS.get_induced_fantasy_model(eval_X)
self.assertEqual(
fant_model.train_inputs[0].shape,
torch.Size(num_fantasies[::-1] + t_batch_size +
[num_data + sum(q_batch_sizes), d]),
)
# collapse fantasy base samples
qMS = qMultiStepLookahead(
model=model,
batch_sizes=q_batch_sizes,
valfunc_cls=[qExpectedImprovement] * 4,
valfunc_argfacs=[make_best_f] * 4,
num_fantasies=num_fantasies,
inner_mc_samples=[2] * 4,
collapse_fantasy_base_samples=False,
)
q_prime = qMS.get_augmented_q_batch_size(q)
eval_X = torch.rand(t_batch_size + [q_prime, d])
result = qMS(eval_X)
self.assertEqual(result.shape, torch.Size(t_batch_size))
self.assertEqual(qMS.samplers[0].batch_range, (-3, -2))
# get induced fantasy model, without collapse_fantasy_base_samples
fant_model = qMS.get_induced_fantasy_model(eval_X)
self.assertEqual(
fant_model.train_inputs[0].shape,
torch.Size(num_fantasies[::-1] + t_batch_size +
[num_data + sum(q_batch_sizes), d]),
)
# X_pending
X_pending = torch.rand(5, d)
qMS = qMultiStepLookahead(
model=model,
batch_sizes=q_batch_sizes,
valfunc_cls=[qExpectedImprovement] * 4,
valfunc_argfacs=[make_best_f] * 4,
num_fantasies=num_fantasies,
inner_mc_samples=[2] * 4,
X_pending=X_pending,
)
q_prime = qMS.get_augmented_q_batch_size(q)
eval_X = torch.rand(t_batch_size + [q_prime, d])
result = qMS(eval_X)
self.assertEqual(result.shape, torch.Size(t_batch_size))
# add dummy base_weights to samplers
samplers = [
SobolQMCNormalSampler(num_samples=nf,
resample=False,
collapse_batch_dims=True)
for nf in num_fantasies
]
for s in samplers:
s.base_weights = torch.ones(s.sample_shape[0],
1,
device=self.device,
dtype=dtype)
qMS = qMultiStepLookahead(
model=model,
batch_sizes=[1, 1, 1],
samplers=samplers,
)
q_prime = qMS.get_augmented_q_batch_size(q)
eval_X = torch.rand(t_batch_size + [q_prime, d])
result = qMS(eval_X)
self.assertEqual(result.shape, torch.Size(t_batch_size))
# extract candidates
cand = qMS.extract_candidates(eval_X)
self.assertEqual(cand.shape, torch.Size(t_batch_size + [q, d]))
def step(self, snapshot_mode: str = 'latest', meta_info: dict = None):
# Save snapshot to save the correct iteration count
self.save_snapshot()
if self.curr_checkpoint == -2:
# Train the initial policies in the source domain
self.train_init_policies()
self.reached_checkpoint() # setting counter to -1
if self.curr_checkpoint == -1:
# Evaluate the initial policies in the target domain
self.eval_init_policies()
self.reached_checkpoint() # setting counter to 0
if self.curr_checkpoint == 0:
# Normalize the input data and standardize the output data
cands_norm = self.ddp_projector.project_to(self.cands)
cands_values_stdized = standardize(self.cands_values).unsqueeze(1)
# Create and fit the GP model
gp = SingleTaskGP(cands_norm, cands_values_stdized)
gp.likelihood.noise_covar.register_constraint('raw_noise', GreaterThan(1e-5))
mll = ExactMarginalLogLikelihood(gp.likelihood, gp)
fit_gpytorch_model(mll)
print_cbt('Fitted the GP.', 'g')
# Acquisition functions
if self.acq_fcn_type == 'UCB':
acq_fcn = UpperConfidenceBound(gp, beta=self.acq_param.get('beta', 0.1), maximize=True)
elif self.acq_fcn_type == 'EI':
acq_fcn = ExpectedImprovement(gp, best_f=cands_values_stdized.max().item(), maximize=True)
elif self.acq_fcn_type == 'PI':
acq_fcn = ProbabilityOfImprovement(gp, best_f=cands_values_stdized.max().item(), maximize=True)
else:
raise pyrado.ValueErr(given=self.acq_fcn_type, eq_constraint="'UCB', 'EI', 'PI'")
# Optimize acquisition function and get new candidate point
cand_norm, acq_value = optimize_acqf(
acq_function=acq_fcn,
bounds=to.stack([to.zeros(self.ddp_space.flat_dim), to.ones(self.ddp_space.flat_dim)]),
q=1,
num_restarts=self.acq_restarts,
raw_samples=self.acq_samples
)
next_cand = self.ddp_projector.project_back(cand_norm)
print_cbt(f'Found the next candidate: {next_cand.numpy()}', 'g')
self.cands = to.cat([self.cands, next_cand], dim=0)
pyrado.save(self.cands, 'candidates', 'pt', self.save_dir, meta_info)
self.reached_checkpoint() # setting counter to 1
if self.curr_checkpoint == 1:
# Train and evaluate a new policy, repeat if the resulting policy did not exceed the success threshold
wrapped_trn_fcn = until_thold_exceeded(
self.thold_succ_subrtn.item(), self.max_subrtn_rep
)(self.train_policy_sim)
wrapped_trn_fcn(self.cands[-1, :], prefix=f'iter_{self._curr_iter}')
self.reached_checkpoint() # setting counter to 2
if self.curr_checkpoint == 2:
# Evaluate the current policy in the target domain
policy = pyrado.load(self.policy, 'policy', 'pt', self.save_dir,
meta_info=dict(prefix=f'iter_{self._curr_iter}'))
self.curr_cand_value = self.eval_policy(
self.save_dir, self._env_real, policy, self.mc_estimator, f'iter_{self._curr_iter}',
self.num_eval_rollouts_real
)
self.cands_values = to.cat([self.cands_values, self.curr_cand_value.view(1)], dim=0)
pyrado.save(self.cands_values, 'candidates_values', 'pt', self.save_dir, meta_info)
# Store the argmax after training and evaluating
curr_argmax_cand = BayRn.argmax_posterior_mean(
self.cands, self.cands_values.unsqueeze(1), self.ddp_space, self.acq_restarts, self.acq_samples
)
self.argmax_cand = to.cat([self.argmax_cand, curr_argmax_cand], dim=0)
pyrado.save(self.argmax_cand, 'candidates_argmax', 'pt', self.save_dir, meta_info)
self.reached_checkpoint() # setting counter to 0
def test_qMS_init(self):
d = 2
q = 1
num_data = 3
q_batch_sizes = [1, 1, 1]
num_fantasies = [2, 2, 1]
t_batch_size = [2]
for dtype in (torch.float, torch.double):
bounds = torch.tensor([[0], [1]], device=self.device, dtype=dtype)
bounds = bounds.repeat(1, d)
train_X = torch.rand(num_data, d, device=self.device, dtype=dtype)
train_Y = torch.rand(num_data, 1, device=self.device, dtype=dtype)
model = SingleTaskGP(train_X, train_Y)
# exactly one of samplers or num_fantasies
with self.assertRaises(UnsupportedError):
qMultiStepLookahead(
model=model,
batch_sizes=q_batch_sizes,
valfunc_cls=[qExpectedImprovement] * 4,
valfunc_argfacs=[make_best_f] * 4,
inner_mc_samples=[2] * 4,
)
# cannot use qMS as its own valfunc_cls
with self.assertRaises(UnsupportedError):
qMultiStepLookahead(
model=model,
batch_sizes=q_batch_sizes,
valfunc_cls=[qMultiStepLookahead] * 4,
valfunc_argfacs=[make_best_f] * 4,
num_fantasies=num_fantasies,
inner_mc_samples=[2] * 4,
)
# construct using samplers
samplers = [
SobolQMCNormalSampler(num_samples=nf,
resample=False,
collapse_batch_dims=True)
for nf in num_fantasies
]
qMS = qMultiStepLookahead(
model=model,
batch_sizes=q_batch_sizes,
valfunc_cls=[qExpectedImprovement] * 4,
valfunc_argfacs=[make_best_f] * 4,
inner_mc_samples=[2] * 4,
samplers=samplers,
)
self.assertEqual(qMS.num_fantasies, num_fantasies)
# use default valfunc_cls, valfun_argfacs, inner_mc_samples
qMS = qMultiStepLookahead(
model=model,
batch_sizes=q_batch_sizes,
samplers=samplers,
)
self.assertEqual(len(qMS._valfunc_cls), 4)
self.assertEqual(len(qMS.inner_samplers), 4)
self.assertEqual(len(qMS._valfunc_argfacs), 4)
# _construct_inner_samplers error catching tests below
# AnalyticAcquisitionFunction with MCAcquisitionObjective
with self.assertRaises(UnsupportedError):
qMultiStepLookahead(
model=model,
objective=IdentityMCObjective(),
batch_sizes=q_batch_sizes,
valfunc_cls=[ExpectedImprovement] * 4,
valfunc_argfacs=[make_best_f] * 4,
num_fantasies=num_fantasies,
)
# AnalyticAcquisitionFunction and q > 1
with self.assertRaises(UnsupportedError):
qMultiStepLookahead(
model=model,
batch_sizes=[2, 2, 2],
valfunc_cls=[ExpectedImprovement] * 4,
valfunc_argfacs=[make_best_f] * 4,
num_fantasies=num_fantasies,
inner_mc_samples=[2] * 4,
)
# AnalyticAcquisitionFunction and inner_mc_samples
with self.assertWarns(Warning):
qMultiStepLookahead(
model=model,
batch_sizes=q_batch_sizes,
valfunc_cls=[ExpectedImprovement] * 4,
valfunc_argfacs=[make_best_f] * 4,
num_fantasies=num_fantasies,
inner_mc_samples=[2] * 4,
)
# MCAcquisitionFunction and non MCAcquisitionObjective
with self.assertRaises(UnsupportedError):
qMultiStepLookahead(
model=model,
objective=ScalarizedObjective(weights=torch.tensor([1.0])),
batch_sizes=[2, 2, 2],
valfunc_cls=[qExpectedImprovement] * 4,
valfunc_argfacs=[make_best_f] * 4,
num_fantasies=num_fantasies,
inner_mc_samples=[2] * 4,
)
# test warmstarting
qMS = qMultiStepLookahead(
model=model,
batch_sizes=q_batch_sizes,
samplers=samplers,
)
q_prime = qMS.get_augmented_q_batch_size(q)
eval_X = torch.rand(t_batch_size + [q_prime, d])
warmstarted_X = warmstart_multistep(
acq_function=qMS,
bounds=bounds,
num_restarts=5,
raw_samples=10,
full_optimizer=eval_X,
)
self.assertEqual(warmstarted_X.shape, torch.Size([5, q_prime, d]))
def test_batched_multi_output_to_single_output(self):
for dtype in (torch.float, torch.double):
# basic test
train_X = torch.rand(10, 2, device=self.device, dtype=dtype)
train_Y = torch.stack(
[
train_X.sum(dim=-1),
(train_X[:, 0] - train_X[:, 1]),
],
dim=1,
)
batched_mo_model = SingleTaskGP(train_X, train_Y)
batched_so_model = batched_multi_output_to_single_output(
batched_mo_model)
self.assertIsInstance(batched_so_model, SingleTaskGP)
self.assertEqual(batched_so_model.num_outputs, 1)
# test non-batched models
non_batch_model = SimpleGPyTorchModel(train_X, train_Y[:, :1])
with self.assertRaises(UnsupportedError):
batched_multi_output_to_single_output(non_batch_model)
gp2 = HeteroskedasticSingleTaskGP(train_X, train_Y,
torch.ones_like(train_Y))
with self.assertRaises(NotImplementedError):
batched_multi_output_to_single_output(gp2)
# test custom likelihood
gp2 = SingleTaskGP(train_X,
train_Y,
likelihood=GaussianLikelihood())
with self.assertRaises(NotImplementedError):
batched_multi_output_to_single_output(gp2)
# test FixedNoiseGP
train_X = torch.rand(10, 2, device=self.device, dtype=dtype)
batched_mo_model = FixedNoiseGP(train_X, train_Y,
torch.rand_like(train_Y))
batched_so_model = batched_multi_output_to_single_output(
batched_mo_model)
self.assertIsInstance(batched_so_model, FixedNoiseGP)
self.assertEqual(batched_so_model.num_outputs, 1)
# test SingleTaskMultiFidelityGP
batched_mo_model = SingleTaskMultiFidelityGP(train_X,
train_Y,
iteration_fidelity=1)
batched_so_model = batched_multi_output_to_single_output(
batched_mo_model)
self.assertIsInstance(batched_so_model, SingleTaskMultiFidelityGP)
self.assertEqual(batched_so_model.num_outputs, 1)
# test input transform
input_tf = Normalize(
d=2,
bounds=torch.tensor([[0.0, 0.0], [1.0, 1.0]],
device=self.device,
dtype=dtype),
)
batched_mo_model = SingleTaskGP(train_X,
train_Y,
input_transform=input_tf)
batch_so_model = batched_multi_output_to_single_output(
batched_mo_model)
self.assertIsInstance(batch_so_model.input_transform, Normalize)
self.assertTrue(
torch.equal(batch_so_model.input_transform.bounds,
input_tf.bounds))
# test batched input transform
input_tf2 = Normalize(
d=2,
bounds=torch.tensor([[-1.0, -1.0], [1.0, 1.0]],
device=self.device,
dtype=dtype),
batch_shape=torch.Size([2]),
)
batched_mo_model = SingleTaskGP(train_X,
train_Y,
input_transform=input_tf2)
batched_so_model = batched_multi_output_to_single_output(
batched_mo_model)
self.assertIsInstance(batch_so_model.input_transform, Normalize)
self.assertTrue(
torch.equal(batch_so_model.input_transform.bounds,
input_tf.bounds))
# test outcome transform
batched_mo_model = SingleTaskGP(train_X,
train_Y,
outcome_transform=Standardize(m=2))
with self.assertRaises(NotImplementedError):
batched_multi_output_to_single_output(batched_mo_model)
def EI_run(seed,
alpha,
rho,
x0=5,
n0=100,
iter_count=1000,
mu_1=2,
mu_2=5,
sigma_1=1,
sigma_2=1,
SAA_seed=None):
"""
Does a single run of the Expected Improvement algorithm for the simple normal problem, without derivatives
:param seed: random seed
:param alpha: risk level
:param rho: risk measure
:param x0: Ignored! Just to keep the same arglist as others
:param n0: outer sample starting size
:param iter_count: number of iterations
:param kwargs: passed to estimator
:param SAA_seed: if given, an SAA version is run with this seed.
:return:
"""
np.random.seed(seed)
begin = datetime.datetime.now()
args = (n0, alpha, rho, mu_1, mu_2, sigma_1, sigma_2, SAA_seed)
points = torch.empty(iter_count, 1)
values = torch.empty(points.shape)
points[:4] = draw_sobol_samples(torch.tensor([[-5.], [5.]]), n=4,
q=1).reshape(-1, 1)
for i in range(4):
values[i] = estimate_no_grad(points[i], *args)
for i in range(4, iter_count):
# fit gp
# this transforms the GP to unit domain - botorch priors work best there
transformed_points = points / 10. + 0.5
model = SingleTaskGP(transformed_points[:i],
values[:i],
outcome_transform=Standardize(m=1))
mll = ExactMarginalLogLikelihood(model.likelihood, model)
fit_gpytorch_model(mll)
# optimize EI to get the candidate
acqf = ExpectedImprovement(model,
best_f=torch.min(values),
maximize=False)
best_p, _ = optimize_acqf(acqf,
bounds=torch.tensor([[0.], [1.]]),
q=1,
num_restarts=10,
raw_samples=50)
# transform it back to original domain
best_p = best_p.detach() * 10. - 5.
points[i] = best_p
values[i] = estimate_no_grad(points[i], *args)
best_list = torch.empty(points.shape)
for i in range(1, iter_count + 1):
# pick the arg min of the history to return
best_ind = torch.argmin(values[:i], dim=0)
best_list[i - 1] = points[best_ind]
x_list = best_list
now = datetime.datetime.now()
print('done time: %s' % (now - begin))
print('call count: %d' % call_count)
# np.save("sa_out/normal/EI_" + rho + "_" + str(alpha) + "_iter_" + str(iter_count) + "_x.npy", x_list)
return x_list
def qehvi_candidates_func(
train_x: "torch.Tensor",
train_obj: "torch.Tensor",
train_con: Optional["torch.Tensor"],
bounds: "torch.Tensor",
) -> "torch.Tensor":
"""Quasi MC-based batch Expected Hypervolume Improvement (qEHVI).
The default value of ``candidates_func`` in :class:`~optuna.integration.BoTorchSampler`
with multi-objective optimization when the number of objectives is three or less.
.. seealso::
:func:`~optuna.integration.botorch.qei_candidates_func` for argument and return value
descriptions.
"""
n_objectives = train_obj.size(-1)
if train_con is not None:
train_y = torch.cat([train_obj, train_con], dim=-1)
is_feas = (train_con <= 0).all(dim=-1)
train_obj_feas = train_obj[is_feas]
constraints = []
n_constraints = train_con.size(1)
for i in range(n_constraints):
constraints.append(lambda Z, i=i: Z[..., -n_constraints + i])
additional_qehvi_kwargs = {
"objective":
IdentityMCMultiOutputObjective(outcomes=list(range(n_objectives))),
"constraints":
constraints,
}
else:
train_y = train_obj
train_obj_feas = train_obj
additional_qehvi_kwargs = {}
train_x = normalize(train_x, bounds=bounds)
model = SingleTaskGP(train_x,
train_y,
outcome_transform=Standardize(m=train_y.shape[-1]))
mll = ExactMarginalLogLikelihood(model.likelihood, model)
fit_gpytorch_model(mll)
# Approximate box decomposition similar to Ax when the number of objectives is large.
# https://github.com/facebook/Ax/blob/master/ax/models/torch/botorch_moo_defaults
if n_objectives > 2:
alpha = 10**(-8 + n_objectives)
else:
alpha = 0.0
partitioning = NondominatedPartitioning(num_outcomes=n_objectives,
Y=train_obj_feas,
alpha=alpha)
ref_point = train_obj.min(dim=0).values - 1e-8
ref_point_list = ref_point.tolist()
acqf = qExpectedHypervolumeImprovement(
model=model,
ref_point=ref_point_list,
partitioning=partitioning,
sampler=SobolQMCNormalSampler(num_samples=256),
**additional_qehvi_kwargs,
)
standard_bounds = torch.zeros_like(bounds)
standard_bounds[1] = 1
candidates, _ = optimize_acqf(
acq_function=acqf,
bounds=standard_bounds,
q=1,
num_restarts=20,
raw_samples=1024,
options={
"batch_limit": 5,
"maxiter": 200,
"nonnegative": True
},
sequential=True,
)
candidates = unnormalize(candidates.detach(), bounds=bounds)
return candidates
def sample_arch(self, START_BO, g, steps, hyperparams, og_flops, full_val_loss, target_flops=0):
if args.slim:
if target_flops == 0:
parameterization = hyperparams.random_sample()
layer_budget = hyperparams.get_layer_budget_from_parameterization(parameterization, self.mask_pruner)
else:
parameterization = np.ones(hyperparams.get_dim()) * args.lower_channel
layer_budget = hyperparams.get_layer_budget_from_parameterization(parameterization, self.mask_pruner)
else:
# random sample to warmup history for MOBO
if g < START_BO:
if target_flops == 0:
f = np.random.rand(1) * (args.upper_channel-args.lower_channel) + args.lower_channel
else:
f = args.lower_channel
parameterization = np.ones(hyperparams.get_dim()) * f
layer_budget = hyperparams.get_layer_budget_from_parameterization(parameterization, self.mask_pruner)
# put the largest model into the history
elif g == START_BO:
if target_flops == 0:
parameterization = np.ones(hyperparams.get_dim())
else:
f = args.lower_channel
parameterization = np.ones(hyperparams.get_dim()) * f
layer_budget = hyperparams.get_layer_budget_from_parameterization(parameterization, self.mask_pruner)
# MOBO
else:
# this is the scalarization (lambda_{FLOPs})
rand = torch.rand(1).cuda()
# standardize data for building Gaussian Processes
train_X = torch.FloatTensor(self.X).cuda()
train_Y_loss = torch.FloatTensor(np.array(self.Y)[:, 0].reshape(-1, 1)).cuda()
train_Y_loss = standardize(train_Y_loss)
train_Y_cost = torch.FloatTensor(np.array(self.Y)[:, 1].reshape(-1, 1)).cuda()
train_Y_cost = standardize(train_Y_cost)
new_train_X = train_X
# GP for the cross entropy loss
gp_loss = SingleTaskGP(new_train_X, train_Y_loss)
mll = ExactMarginalLogLikelihood(gp_loss.likelihood, gp_loss)
mll = mll.to('cuda')
fit_gpytorch_model(mll)
# GP for FLOPs
# we use add-gp since FLOPs has addive structure (not exactly though)
# the parameters for ScaleKernel and MaternKernel simply follow the default
covar_module = AdditiveStructureKernel(
ScaleKernel(
MaternKernel(
nu=2.5,
lengthscale_prior=GammaPrior(3.0, 6.0),
num_dims=1
),
outputscale_prior=GammaPrior(2.0, 0.15),
),
num_dims=train_X.shape[1]
)
gp_cost = SingleTaskGP(new_train_X, train_Y_cost, covar_module=covar_module)
mll = ExactMarginalLogLikelihood(gp_cost.likelihood, gp_cost)
mll = mll.to('cuda')
fit_gpytorch_model(mll)
# Build acquisition functions
UCB_loss = UpperConfidenceBound(gp_loss, beta=0.1).cuda()
UCB_cost = UpperConfidenceBound(gp_cost, beta=0.1).cuda()
# Combine them via augmented Tchebyshev scalarization
self.mobo_obj = RandAcquisition(UCB_loss).cuda()
self.mobo_obj.setup(UCB_loss, UCB_cost, rand)
# Bounds for the optimization variable (alpha)
lower = torch.ones(new_train_X.shape[1])*args.lower_channel
upper = torch.ones(new_train_X.shape[1])*args.upper_channel
self.mobo_bounds = torch.stack([lower, upper]).cuda()
# Pareto-aware sampling
if args.pas:
# Generate approximate Pareto front first
costs = []
for i in range(len(self.population_data)):
costs.append([self.population_data[i]['loss'], self.population_data[i]['ratio']])
costs = np.array(costs)
efficient_mask = is_pareto_efficient(costs)
costs = costs[efficient_mask]
loss = costs[:, 0]
flops = costs[:, 1]
sorted_idx = np.argsort(flops)
loss = loss[sorted_idx]
flops = flops[sorted_idx]
if flops[0] > args.lower_flops:
flops = np.concatenate([[args.lower_flops], flops.reshape(-1)])
loss = np.concatenate([[8], loss.reshape(-1)])
else:
flops = flops.reshape(-1)
loss = loss.reshape(-1)
if flops[-1] < args.upper_flops and (loss[-1] > full_val_loss):
flops = np.concatenate([flops.reshape(-1), [args.upper_flops]])
loss = np.concatenate([loss.reshape(-1), [full_val_loss]])
else:
flops = flops.reshape(-1)
loss = loss.reshape(-1)
# Equation (4) in paper
areas = (flops[1:]-flops[:-1])*(loss[:-1]-loss[1:])
# Quantize into 50 bins to sample from multinomial
self.sampling_weights = np.zeros(50)
k = 0
while k < len(flops) and flops[k] < args.lower_flops:
k+=1
for i in range(50):
lower = i/50.
upper = (i+1)/50.
if upper < args.lower_flops or lower > args.upper_flops or lower < args.lower_flops:
continue
cnt = 1
while ((k+1) < len(flops)) and upper > flops[k+1]:
self.sampling_weights[i] += areas[k]
cnt += 1
k += 1
if k < len(areas):
self.sampling_weights[i] += areas[k]
self.sampling_weights[i] /= cnt
if np.sum(self.sampling_weights) == 0:
self.sampling_weights = np.ones(50)
if target_flops == 0:
val = np.arange(0.01, 1, 0.02)
chosen_target_flops = np.random.choice(val, p=(self.sampling_weights/np.sum(self.sampling_weights)))
else:
chosen_target_flops = target_flops
# Binary search is here
lower_bnd, upper_bnd = 0, 1
lmda = 0.5
for i in range(10):
self.mobo_obj.rand = lmda
parameterization, acq_value = optimize_acqf(
self.mobo_obj, bounds=self.mobo_bounds, q=1, num_restarts=5, raw_samples=1000,
)
parameterization = parameterization[0].cpu().numpy()
layer_budget = hyperparams.get_layer_budget_from_parameterization(parameterization, self.mask_pruner)
sim_flops = self.mask_pruner.simulate_and_count_flops(layer_budget)
ratio = sim_flops/og_flops
if np.abs(ratio - chosen_target_flops) <= 0.02:
break
if args.baseline > 0:
if ratio < chosen_target_flops:
lower_bnd = lmda
lmda = (lmda + upper_bnd) / 2
elif ratio > chosen_target_flops:
upper_bnd = lmda
lmda = (lmda + lower_bnd) / 2
else:
if ratio < chosen_target_flops:
upper_bnd = lmda
lmda = (lmda + lower_bnd) / 2
elif ratio > chosen_target_flops:
lower_bnd = lmda
lmda = (lmda + upper_bnd) / 2
rand[0] = lmda
writer.add_scalar('Binary search trials', i, steps)
else:
parameterization, acq_value = optimize_acqf(
self.mobo_obj, bounds=self.mobo_bounds, q=1, num_restarts=5, raw_samples=1000,
)
parameterization = parameterization[0].cpu().numpy()
layer_budget = hyperparams.get_layer_budget_from_parameterization(parameterization, self.mask_pruner)
return layer_budget, parameterization, self.sampling_weights/np.sum(self.sampling_weights)
def qei_candidates_func(
train_x: "torch.Tensor",
train_obj: "torch.Tensor",
train_con: Optional["torch.Tensor"],
bounds: "torch.Tensor",
) -> "torch.Tensor":
"""Quasi MC-based batch Expected Improvement (qEI).
The default value of ``candidates_func`` in :class:`~optuna.integration.BoTorchSampler`
with single-objective optimization.
Args:
train_x:
Previous parameter configurations. A ``torch.Tensor`` of shape
``(n_trials, n_params)``. ``n_trials`` is the number of already observed trials
and ``n_params`` is the number of parameters. ``n_params`` may be larger than the
actual number of parameters if categorical parameters are included in the search
space, since these parameters are one-hot encoded.
Values are not normalized.
train_obj:
Previously observed objectives. A ``torch.Tensor`` of shape
``(n_trials, n_objectives)``. ``n_trials`` is identical to that of ``train_x``.
``n_objectives`` is the number of objectives. Observations are not normalized.
train_con:
Objective constraints. A ``torch.Tensor`` of shape ``(n_trials, n_constraints)``.
``n_trials`` is identical to that of ``train_x``. ``n_constraints`` is the number of
constraints. A constraint is violated if strictly larger than 0. If no constraints are
involved in the optimization, this argument will be :obj:`None`.
bounds:
Search space bounds. A ``torch.Tensor`` of shape ``(n_params, 2)``. ``n_params`` is
identical to that of ``train_x``. The first and the second column correspond to the
lower and upper bounds for each parameter respectively.
Returns:
Next set of candidates. Usually the return value of BoTorch's ``optimize_acqf``.
"""
if train_obj.size(-1) != 1:
raise ValueError("Objective may only contain single values with qEI.")
if train_con is not None:
train_y = torch.cat([train_obj, train_con], dim=-1)
is_feas = (train_con <= 0).all(dim=-1)
train_obj_feas = train_obj[is_feas]
if train_obj_feas.numel() == 0:
# TODO(hvy): Do not use 0 as the best observation.
_logger.warning(
"No objective values are feasible. Using 0 as the best objective in qEI."
)
best_f = torch.zeros(())
else:
best_f = train_obj_feas.max()
constraints = []
n_constraints = train_con.size(1)
for i in range(n_constraints):
constraints.append(lambda Z, i=i: Z[..., -n_constraints + i])
objective = ConstrainedMCObjective(
objective=lambda Z: Z[..., 0],
constraints=constraints,
)
else:
train_y = train_obj
best_f = train_obj.max()
objective = None # Using the default identity objective.
train_x = normalize(train_x, bounds=bounds)
model = SingleTaskGP(train_x,
train_y,
outcome_transform=Standardize(m=train_y.size(-1)))
mll = ExactMarginalLogLikelihood(model.likelihood, model)
fit_gpytorch_model(mll)
acqf = qExpectedImprovement(
model=model,
best_f=best_f,
sampler=SobolQMCNormalSampler(num_samples=256),
objective=objective,
)
standard_bounds = torch.zeros_like(bounds)
standard_bounds[1] = 1
candidates, _ = optimize_acqf(
acq_function=acqf,
bounds=standard_bounds,
q=1,
num_restarts=10,
raw_samples=512,
options={
"batch_limit": 5,
"maxiter": 200
},
sequential=True,
)
candidates = unnormalize(candidates.detach(), bounds=bounds)
return candidates
import torch from botorch.test_functions import Branin from botorch.models import SingleTaskGP from botorch.fit import fit_gpytorch_model from botorch.models.transforms import Standardize from gpytorch.mlls import ExactMarginalLogLikelihood from parametric_bandit.discrete_KG import DiscreteKGAlg torch.manual_seed(0) # generate input n = 10 noise_std = 0.1 function = Branin(noise_std=0.1) dim = function.dim train_X = torch.rand((n, dim)) train_Y = function(train_X).unsqueeze(-1) # fit model gp = SingleTaskGP(train_X, train_Y, outcome_transform=Standardize(m=1)) mll = ExactMarginalLogLikelihood(gp.likelihood, gp) fit_gpytorch_model(mll) # get mu and Sigma mu = gp.posterior(train_X).mean Sigma = gp.posterior(train_X).mvn.covariance_matrix # initiate the algorithm for testing dkg = DiscreteKGAlg(M=n, error=noise_std**2, mu_0=mu, Sigma_0=Sigma) print(dkg.find_maximizer())
