def __init__(
self, makefile_root_path: Optional[Path] = None, makefile_name: None = None
) -> None:
"""
Call the make file.
Parameters
----------
makefile_root_path : None or Path or str
Root path of make file
If None, the path of the root caller of MakeProject will be called
makefile_name : None or str
If set to None, it tries the following names, in order:
'GNUmakefile', 'makefile' and 'Makefile'
"""
if makefile_root_path is None:
makefile_root_path = get_caller_dir()
self.makefile_root_path = Path(makefile_root_path)
logging.debug("self.makefile_root_path set to %s", makefile_root_path)
self.makefile_name = makefile_name
self.makefile_path = get_makefile_path(
self.makefile_root_path, self.makefile_name
)
self.exec_name = get_exec_name(self.makefile_path)
self.submitter = LocalSubmitter(self.makefile_root_path)
def __init__(
self,
path: Optional[Path] = None,
processor_split: Optional[ProcessorSplit] = None,
) -> None:
"""
Set the path from where the calls are made from.
Parameters
----------
path : Path or str or None
Directory to run the command from
If None, the calling directory will be used
processor_split : ProcessorSplit or None
Object containing the processor split
If None, default values will be used
"""
# NOTE: We are not setting the default as a keyword argument
# as this would mess up the paths
self.__path = Path(
path).absolute() if path is not None else get_caller_dir()
self.__process: Optional[subprocess.Popen] = None
# Attributes with getters
self.__pid: Optional[int] = None
self.__return_code: Optional[int] = None
self.__std_out: Optional[str] = None
self.__std_err: Optional[str] = None
self.processor_split = (processor_split if processor_split is not None
else ProcessorSplit())
def __init__(
self,
job_name: Optional[str] = None,
store_dir: Optional[Path] = None,
submission_dict: Optional[Dict[str, Optional[str]]] = None,
processor_split: Optional[ProcessorSplit] = None,
) -> None:
"""
Set the member data.
Parameters
----------
job_name : str or None
Name of the job
If None, a timestamp will be given as job_name
store_dir : Path or None
Directory to store the script
If None, the caller directory will be used as the store directory
submission_dict : None or dict of str of None or str
Dict containing optional submission options
One the form
>>> {'walltime': None or str,
... 'mail': None or str,
... 'queue': None or str,
... 'account': None or str}
These options will not be used if the submission_dict is None
processor_split : ProcessorSplit or None
Object containing the processor split
If None, default values will be used
"""
super().__init__(processor_split)
if job_name is None:
self._job_name = datetime.now().strftime("%m-%d-%Y_%H-%M-%S-%f")
else:
self._job_name = job_name
if store_dir is None:
self._store_dir = get_caller_dir()
else:
self._store_dir = store_dir
self._submission_dict = (
submission_dict.copy() if submission_dict is not None else dict()
)
submission_dict_keys = self._submission_dict.keys()
for key in ("walltime", "mail", "queue", "account"):
if key not in submission_dict_keys:
self._submission_dict[key] = None
self._log_and_error_base: Path = Path()
self._waiting_for: List[str] = list()
self._released = False
# The following will be set by the implementations
self._cluster_specific = {"cancel_str": "", "release_str": "", "submit_str": ""}
def __init__(
self,
run_path: Optional[Path] = None,
processor_split: Optional[ProcessorSplit] = None,
) -> None:
"""
Set the path from where the calls are made from.
Parameters
----------
run_path : Path or str or None
Directory to run the command from
If None, the calling directory will be used
processor_split : ProcessorSplit or None
Object containing the processor split
If None, default values will be used
"""
AbstractSubmitter.__init__(self, processor_split)
# NOTE: We are not setting the default as a keyword argument
# as this would mess up the paths
self.run_path = (Path(run_path).absolute()
if run_path is not None else get_caller_dir())
self.__process: Optional[subprocess.Popen] = None
def create_db_path(name: Optional[str],
db_root_path: Optional[Path]) -> Path:
"""
Create the database path.
Parameters
----------
name : str or None
Name of the database (excluding .db)
If set to None, the name of the caller directory will be used
db_root_path : Path or str or None
Path to database
If None is set, the path will be set to $HOME/BOUT_db
Returns
-------
db_path : Path
Path to the database
"""
if name is None:
name = get_caller_dir().name
if db_root_path is None:
db_root_path = Path().home().joinpath("BOUT_db")
db_root_path = Path(db_root_path)
db_root_path.mkdir(exist_ok=True, parents=True)
# NOTE: sqlite does not support schemas (except through an
# ephemeral ATTACH connection)
# Thus we will make one database per project
# https://www.sqlite.org/lang_attach.html
# https://stackoverflow.com/questions/30897377/python-sqlite3-create-a-schema-without-having-to-use-a-second-database
db_path = db_root_path.joinpath(f"{name}.db")
return db_path
def project_path(self, project_path: Optional[Union[Path, str]]) -> None:
if project_path is None:
project_path = get_caller_dir()
project_path = Path(project_path).absolute()
self.__project_path = project_path
logging.debug("self.project_path set to %s", project_path)