def bpm_3d_spheres(size, units, lam = .5, u0 = None,
points = None,
dn_inner = 0.0, rad_inner = 0.,
dn_outer = 0.05, rad_outer = 2.5,
return_scattering = False,
use_fresnel_approx = False
):
"""
simulates the propagation of monochromativ wave of wavelength lam with initial conditions u0 along z in a media filled with coated spheres at positions points and inner radius r1 and dn1 and outer radius r2/ dn2
size - the dimension of the image to be calulcated in pixels (Nx,Ny,Nz)
units - the unit lengths of each dimensions in microns
lam - the wavelength
u0 - the initial field distribution, if u0 = None an incident plane wave is assumed
points - a list of coordinates [[x1,y1,z1],...] in real unit interval
[0...dx*nx] where spheres are placed.
"""
dn_g = create_dn_buffer(size,units,points = points,
dn_inner = dn_inner, rad_inner = rad_inner,
dn_outer = dn_outer, rad_outer = rad_outer)
return bpm_3d(size = size,units = units,lam = lam,
u0 = u0,dn = dn_g,
return_scattering= return_scattering,
use_fresnel_approx = use_fresnel_approx)
def bpm_3d_spheres(size,
units,
lam=.5,
u0=None,
points=None,
dn_inner=0.0,
rad_inner=0.,
dn_outer=0.05,
rad_outer=2.5,
return_scattering=False,
use_fresnel_approx=False):
"""
simulates the propagation of monochromativ wave of wavelength lam with initial conditions u0 along z in a media filled with coated spheres at positions points and inner radius r1 and dn1 and outer radius r2/ dn2
size - the dimension of the image to be calulcated in pixels (Nx,Ny,Nz)
units - the unit lengths of each dimensions in microns
lam - the wavelength
u0 - the initial field distribution, if u0 = None an incident plane wave is assumed
points - a list of coordinates [[x1,y1,z1],...] in real unit interval
[0...dx*nx] where spheres are placed.
"""
dn_g = create_dn_buffer(size,
units,
points=points,
dn_inner=dn_inner,
rad_inner=rad_inner,
dn_outer=dn_outer,
rad_outer=rad_outer)
return bpm_3d(size=size,
units=units,
lam=lam,
u0=u0,
dn=dn_g,
return_scattering=return_scattering,
use_fresnel_approx=use_fresnel_approx)
dz = 1.*Lz/(Nz-1)
lam = .5
x = dx*arange(Nx)
y = dx*arange(Nx)
z = dz*arange(Nz)
X0,Y0 = meshgrid(x,y,indexing="ij")
_xgrid = (X0%a)-.5*a
_ygrid = (Y0%a)-.5*a
R = sqrt(_xgrid**2+_ygrid**2)
u0 = (jn(1,4*R)+2.e-10)/4./(1.e-10+R)+0.j
u0 = u0.astype(complex64)
# u0 = exp(-20*(_xgrid**2+_ygrid**2))
# u0 *= exp(-1.5*(R0/dx/Nx*3.)**2)
u, dn = bpm_3d((Nx,Nx,Nz), (dx,dx,dz), lam = lam ,u0 = u0,
use_fresnel_approx = False)
overlaps = array([overlap(abs(u[0,...])**2,abs(u[i,...])**2) for i in range(Nz)])
dz = 1. * Lz / (Nz - 1)
lam = .5
x = dx * arange(Nx)
y = dx * arange(Nx)
z = dz * arange(Nz)
X0, Y0 = meshgrid(x, y, indexing="ij")
_xgrid = (X0 % a) - .5 * a
_ygrid = (Y0 % a) - .5 * a
R = sqrt(_xgrid**2 + _ygrid**2)
u0 = (jn(1, 4 * R) + 2.e-10) / 4. / (1.e-10 + R) + 0.j
u0 = u0.astype(complex64)
# u0 = exp(-20*(_xgrid**2+_ygrid**2))
# u0 *= exp(-1.5*(R0/dx/Nx*3.)**2)
u, dn = bpm_3d((Nx, Nx, Nz), (dx, dx, dz),
lam=lam,
u0=u0,
use_fresnel_approx=False)
overlaps = array(
[overlap(abs(u[0, ...])**2,
abs(u[i, ...])**2) for i in range(Nz)])