def run_jobs(self):
if self.cluster==True:
self.cluster_run_jobs()
else:
if (len(self.jobs)==0):
return
for i in range(0, len(self.jobs)):
if (self.jobs_running<self.cpus):
if self.status[i]==0:
self.status[i]=1
for r in range(0,len(self.jobs)):
print(self.jobs[i],self.args[i])
print("Running job",self.jobs[i],self.args[i])
if self.enable_gui==True:
self.progress_window.set_text("Running job "+self.jobs[i])
self.jobs_running=self.jobs_running+1
# if running_on_linux()==True:
cmd="cd "+self.jobs[i]+";"
cmd=cmd+get_exe_command()+" --lock "+"lock"+str(i)+" "+self.args[i]+" --gui --html &"
print("command="+cmd)
if self.enable_gui==True:
self.terminal.run(self.jobs[i],get_exe_command()+" --lock "+"lock"+str(i)+" "+self.args[i]+" --gui --html")
else:
print(cmd)
os.system(cmd)
def callback_run_fit(self, widget, data=None): if running_on_linux()==True: cmd = "cd "+os.getcwd()+" \n" self.terminal.feed_child(cmd) cmd = get_exe_command()+" --1fit&\n" self.terminal.feed_child(cmd) else: cmd = get_exe_command()+" --1fit" subprocess.Popen([cmd])
def get_license(self,key="none",uid=None):
if uid==None:
uid=self.uid
command=multiplatform_exe_command(get_exe_command()+" --license")
os.system(command)
l=inp()
l.load(os.path.join(get_tmp_path(),"ret.txt"))
lines=l.get_token("#ret")
if lines==False:
return False
if lines=="tooold":
self.error="too_old"
return False
if lines=="error":
self.error="uid_not_found"
return False
self.load()
self.registered=True
return True
def base_server_get_next_job_to_run(self, lock_file=False):
if (len(self.jobs) == 0):
return False, False
for i in range(0, len(self.jobs)):
if (self.jobs_running < self.cpus):
if self.jobs[i].status == 0:
self.jobs[i].status = 1
self.jobs[i].start = str(datetime.now())
self.jobs[i].ip = socket.gethostbyname(
socket.gethostname())
#for r in range(0,len(self.jobs)):
# print(self.jobs[i],self.args[i])
self.jobs_running = self.jobs_running + 1
if lock_file == True:
command_lock = " --lockfile " + os.path.join(
self.sim_dir, "lock" + str(i) + ".dat")
else:
command_lock = " --lock " + "lock" + str(i)
full_command = get_exe_command(
) + command_lock + " " + self.jobs[
i].args + " " + get_exe_args()
self.jobs[i].full_command = full_command
return self.jobs[i].path, full_command
return False, False
def callback_examine(self, widget, data=None):
mycmp=cmp_class()
ret=mycmp.init(self.sim_dir,get_exe_command())
if ret==False:
md = gtk.MessageDialog(None, gtk.DIALOG_DESTROY_WITH_PARENT, gtk.MESSAGE_WARNING, gtk.BUTTONS_CLOSE, _("Re-run the simulation with 'dump all slices' set to one to use this tool."))
md.run()
md.destroy()
return
def run_jobs(self):
if self.cluster == True:
s = socket.socket(socket.AF_INET, socket.SOCK_DGRAM)
port = 8888
self.mylock = True
s.sendto("set_master_ip", (self.server_ip, port))
self.wait_lock()
self.mylock = True
s.sendto("set_exe#" + get_exe_command(), (self.server_ip, port))
self.wait_lock()
# self.mylock.clear()
s.sendto("run", (self.server_ip, port))
# self.mylock.wait(1000)
s.close()
else:
if len(self.jobs) == 0:
return
for i in range(0, len(self.jobs)):
if self.jobs_running < self.cpus:
if self.status[i] == 0:
self.status[i] = 1
print "Running job", self.jobs[i]
if self.enable_gui == True:
self.progress_window.set_text("Running job" + self.jobs[i])
self.jobs_running = self.jobs_running + 1
if running_on_linux() == True:
cmd = "cd " + self.jobs[i] + ";"
cmd = cmd + get_exe_command() + " --lock " + "lock" + str(i) + " &\n"
print "command=" + cmd
if self.enable_gui == True:
self.terminal.feed_child(cmd)
else:
print cmd
os.system(cmd)
else:
cmd = get_exe_command() + " --lock " + "lock" + str(i) + " &\n"
print cmd, self.jobs[i]
subprocess.Popen(cmd, cwd=self.jobs[i])
def killall(self):
if self.cluster == True:
s = socket.socket(socket.AF_INET, socket.SOCK_DGRAM)
port = 8888
s.sendto("killall", (self.server_ip, port))
s.close()
else:
exe_name = os.path.basename(get_exe_command())
cmd = "killall " + exe_name
ret = os.system(cmd)
self.stop()
def update_graph(self): cmd = get_exe_command()+' --optics' print cmd ret= os.system(cmd) self.fig_photon_density.my_figure.clf() self.fig_photon_density.draw_graph() self.fig_photon_density.canvas.draw() self.fig_photon_abs.my_figure.clf() self.fig_photon_abs.draw_graph() self.fig_photon_abs.canvas.draw() for i in range(0,len(self.plot_widgets)): self.plot_widgets[i].update()
def load(self):
self.clear()
self.clean_menu()
self.last_page=0
#self.setTabsClosable(True)
self.setMovable(True)
if (os.path.isfile(os.path.join(get_sim_path(),"sim.gpvdm"))==True):
self.finished_loading=False
#self.progress.init()
#self.progress.show()
#self.progress.start()
#self.progress.set_text("Loading..")
#process_events()
# dos_files=inp_get_token_value("device_epitaxy.inp", "#layers")
widget=tab_main()
self.addTab(widget,_("Device structure"))
self.update_display_function=widget.update
self.terminal=tab_terminal()
self.terminal.init()
self.addTab(self.terminal,_("Terminal"))
self.terminal.run(os.getcwd(),get_exe_command()+" --version "+get_exe_args())
global_object_register("terminal",self.terminal)
widget=tab_view()
self.addTab(widget,_("Output"))
#self.add_info_page()
return True
self.finished_loading=True
#self.progress.stop()
#self.progress.set_fraction(0.0)
self.goto_page(_("Device structure"))
else:
self.add_info_page()
self.goto_page(_("Information"))
return False
def callback_run(self):
dump_optics=inp_get_token_value("dump.inp", "#dump_optics")
dump_optics_verbose=inp_get_token_value("dump.inp", "#dump_optics_verbose")
inp_update_token_value("dump.inp", "#dump_optics","true",1)
inp_update_token_value("dump.inp", "#dump_optics_verbose","true",1)
cmd = get_exe_command()+' --simmode opticalmodel@optics'
print(cmd)
ret= os.system(cmd)
inp_update_token_value("dump.inp", "#dump_optics",dump_optics,1)
inp_update_token_value("dump.inp", "#dump_optics_verbose",dump_optics_verbose,1)
self.update()
self.update_cb()
inp_update_token_value("dump.inp", "#dump_optics","true",1)
inp_update_token_value("dump.inp", "#dump_optics_verbose","true",1)
def register(self,email="",name="",company=""):
l=inp()
l.append("#email")
l.append(email)
l.append("#name")
l.append(name)
l.append("#company")
l.append(company)
l.append("#lang")
l.append(get_full_language())
l.append("#end")
reg_path=os.path.join(get_tmp_path(),"reg.txt")
print("write to",reg_path)
l.save_as(reg_path)
print(">",l.zip_file_path)
print(">>",l.file_name)
command=multiplatform_exe_command(get_exe_command()+" --register")
os.system(command)
print("done")
#l.delete()
l=inp()
l.load(os.path.join(get_tmp_path(),"ret.txt"))
lines=l.get_token("#ret")
if lines==False:
return False
if lines=="no_internet":
self.error="no_internet"
return False
if lines=="tooold":
self.error="too_old"
return False
self.uid=lines
return True
def validate_key(self,key):
command=multiplatform_exe_command(get_exe_command()+" --validate "+key)
os.system(command)
l=inp()
l.load(os.path.join(get_tmp_path(),"ret.txt"))
lines=l.get_token("#ret")
if lines==False:
self.error="no_internet"
return False
if lines=="ok":
self.load()
return True
elif lines=="tooold":
self.error="too_old"
return False
self.error=lines
return False
def load(self):
self.clear()
self.last_page = 0
#self.setTabsClosable(True)
self.setMovable(True)
if (os.path.isfile(os.path.join(get_sim_path(), "sim.gpvdm")) == True):
self.tab_main = tab_main()
self.addTab(self.tab_main, _("Device structure"))
mesh = get_mesh()
if mesh.y.circuit_model == True: # or mesh.x.tot_points!=1 or mesh.z.tot_points!=1:
self.display_mesh = display_mesh()
if mesh.y.circuit_model == True:
self.addTab(self.display_mesh, _("Circuit diagram"))
else:
self.addTab(self.display_mesh, _("Electrical mesh"))
self.update_display_function = self.tab_main.update
#self.tab_main.three_d.display.force_redraw()
self.terminal = tab_terminal()
self.terminal.init()
self.addTab(self.terminal, _("Terminal"))
self.terminal.run(
os.getcwd(),
get_exe_command() + " --version2 " + get_exe_args())
global_object_register("terminal", self.terminal)
widget = tab_view()
self.addTab(widget, _("Output"))
self.add_docs_page()
self.state_loaded = True
else:
self.add_info_page()
self.goto_page(_("Information"))
self.state_loaded = False
def add_jobs(self, scan_dir_path):
exe_command = get_exe_command()
scans = scans_io(os.getcwd())
scan_config_file = scans.find_path_by_name(
os.path.basename(scan_dir_path))
s = scan_io()
s.load(scan_config_file)
program_list = s.program_list
watch_dir = os.path.join(os.getcwd(), scan_dir_path)
commands = []
#server_find_simulations_to_run(commands,scan_dir_path)
commands = tree_load_flat_list(scan_dir_path)
print(commands)
self.server.base_server_init(watch_dir)
for i in range(0, len(commands)):
self.server.add_job(commands[i], "")
print("Adding job" + commands[i])
def killall(self):
if self.cluster==True:
data=tx_struct()
data.id="gpvdm_stop_all_jobs"
self.tx_packet(data)
data.id="gpvdmkillall"
self.tx_packet(data)
sleep(1)
data.id="gpvdm_delete_all_jobs"
self.tx_packet(data)
else:
print("stop jobs")
if running_on_linux()==True:
exe_name=os.path.basename(get_exe_command())
cmd = 'killall '+exe_name
ret= os.system(cmd)
self.stop()
def init(self):
return False
self.dumps=0
self.plot_token=plot_state()
vbox=gtk.VBox()
self.multi_plot=False
self.log_scale_y="auto"
menu_items = (
( "/_Options", None, None, 0, "<Branch>" ),
( "/Options/_Subtract 0th frame", None, self.callback_toggle_subtract, 0, "<ToggleItem>", "gtk-save" ),
( "/_Axis/_Multiplot", None, self.callback_multi_plot, 0, "<ToggleItem>", "gtk-save" ),
( "/_Axis/_Set y axis to maximum", None, self.callback_set_min_max, 0, "<ToggleItem>", "gtk-save" ),
)
self.plot.item_factory.create_items(menu_items)
primary_hbox.add(self.entry0)
sim_vbox.add(primary_hbox)
secondary_hbox=gtk.HBox()
text=gtk.Label("Secondary dir")
secondary_hbox.add(text)
self.entry1 = gtk.combo_box_entry_new_text()
self.entry1.show()
for i in range(0,len(self.snapshot_list)):
self.entry1.append_text(self.snapshot_list[i])
secondary_hbox.add(self.entry1)
sim_vbox.add(secondary_hbox)
sim_vbox.show()
#hbox.set_size_request(-1, 30)
vbox.pack_start(sim_vbox, False, False, 0)
hbox2=gtk.HBox()
text=gtk.Label("Files to plot")
hbox2.add(text)
self.entry2 = gtk.Entry()
self.entry2.set_text("pt_map nt_map")
self.entry2.show()
hbox2.add(self.entry2)
hbox2.set_size_request(-1, 30)
vbox.pack_start(hbox2, False, False, 0)
hbox3=gtk.HBox()
text=gtk.Label("Exprimental data")
hbox3.add(text)
self.entry3 = gtk.Entry()
self.entry3.set_text("")
self.entry3.show()
hbox3.add(self.entry3)
hbox3.set_size_request(-1, 30)
vbox.pack_start(hbox3, False, False, 0)
self.update_button = gtk.Button()
self.update_button.set_label("Update")
self.update_button.show()
self.update_button.connect("clicked", self.callback_scale)
vbox.add(self.update_button)
self.config_load()
self.count_dumps()
if self.dumps==0:
md = gtk.MessageDialog(None, 0, gtk.MESSAGE_QUESTION, gtk.BUTTONS_YES_NO, "No slice data has been written to disk. You need to re-run the simulation with the dump_slices set to 1. Would you like to do this now? Note: This generates lots of files and will slow down the simulation.")
response = md.run()
if response == gtk.RESPONSE_YES:
inp_update_token_value("dump.inp", "#dump_1d_slices", "1",1)
os.system(get_exe_command())
md.destroy()
self.count_dumps()
self.entry0.connect("changed", self.callback_edit)
self.entry1.connect("changed", self.callback_edit)
self.entry2.connect("changed", self.callback_edit)
self.entry3.connect("changed", self.callback_edit)
vbox.show_all()
self.add(vbox)
self.update(0)
if self.dumps!=0:
self.plot.do_plot()
print("CONVERT!!!!!!!!!!!",type(self.plot.plot_token.key_units))
self.set_border_width(10)
self.set_title("Compare")
self.set_icon_from_file(os.path.join(get_image_file_path(),"image.jpg"))
self.connect('key_press_event', self.on_key_press_event)
self.show()
def init(self):
self.dumps=0
self.plot_token=plot_state()
self.win_list=windows()
self.win_list.load()
self.win_list.set_window(self,"cmp_class")
self.snapshot_list=self.update_snapshots_dir()
vbox=gtk.VBox()
self.multi_plot=False
self.log_scale_y="auto"
self.plot=plot_widget()
self.plot.init(self)
accel_group = gtk.AccelGroup()
item_factory = gtk.ItemFactory(gtk.MenuBar, "<main>", accel_group)
menu_items = (
( "/_Options", None, None, 0, "<Branch>" ),
( "/Options/_Subtract 0th frame", None, self.callback_toggle_subtract, 0, "<ToggleItem>", "gtk-save" ),
( "/_Axis/_Multiplot", None, self.callback_multi_plot, 0, "<ToggleItem>", "gtk-save" ),
( "/_Axis/_Set y axis to maximum", None, self.callback_set_min_max, 0, "<ToggleItem>", "gtk-save" ),
)
self.plot.item_factory.create_items(menu_items)
image = gtk.Image()
image.set_from_file(os.path.join(get_image_file_path(),"video.png"))
self.video = gtk.ToolButton(image)
self.plot.toolbar.add(self.video)
self.video.show()
self.video.connect("clicked", self.callback_save)
image = gtk.Image()
image.set_from_file(os.path.join(get_image_file_path(),"scale.png"))
self.scale = gtk.ToolButton(image)
self.plot.toolbar.add(self.scale)
sep = gtk.SeparatorToolItem()
sep.set_draw(False)
sep.set_expand(True)
self.plot.toolbar.add(sep)
sep.show()
help = gtk.ToolButton(gtk.STOCK_HELP)
self.plot.toolbar.add(help)
help.connect("clicked", self.callback_help)
help.show()
close = gtk.ToolButton(gtk.STOCK_QUIT)
close.connect("clicked", self.callback_close)
self.plot.toolbar.add(close)
close.show()
self.connect("delete-event", self.callback_close)
self.plot.toolbar.show_all()
self.canvas=self.plot.canvas
self.plot.show()
vbox.add(self.plot)
#adjust
self.adj1 = gtk.Adjustment(0.0, 0.0, 100, 1, 1.0, 1.0)
self.adj1.connect("value_changed", self.callback_scale)
vscale = gtk.HScale(self.adj1)
vscale.set_update_policy(gtk.UPDATE_CONTINUOUS)
vscale.set_digits(1)
vscale.set_value_pos(gtk.POS_TOP)
vscale.set_draw_value(True)
vscale.set_size_request(200, 40)
vscale.set_digits(0)
vbox.pack_start(vscale, False, False, 10)
sim_vbox=gtk.VBox()
primary_hbox=gtk.HBox()
text=gtk.Label("Primary dir")
primary_hbox.add(text)
self.entry0 = gtk.combo_box_entry_new_text()
self.entry0.show()
for i in range(0,len(self.snapshot_list)):
self.entry0.append_text(self.snapshot_list[i])
primary_hbox.add(self.entry0)
sim_vbox.add(primary_hbox)
secondary_hbox=gtk.HBox()
text=gtk.Label("Secondary dir")
secondary_hbox.add(text)
self.entry1 = gtk.combo_box_entry_new_text()
self.entry1.show()
for i in range(0,len(self.snapshot_list)):
self.entry1.append_text(self.snapshot_list[i])
secondary_hbox.add(self.entry1)
sim_vbox.add(secondary_hbox)
sim_vbox.show()
#hbox.set_size_request(-1, 30)
vbox.pack_start(sim_vbox, False, False, 0)
hbox2=gtk.HBox()
text=gtk.Label("Files to plot")
hbox2.add(text)
self.entry2 = gtk.Entry()
self.entry2.set_text("pt_map nt_map")
self.entry2.show()
hbox2.add(self.entry2)
hbox2.set_size_request(-1, 30)
vbox.pack_start(hbox2, False, False, 0)
hbox3=gtk.HBox()
text=gtk.Label("Exprimental data")
hbox3.add(text)
self.entry3 = gtk.Entry()
self.entry3.set_text("")
self.entry3.show()
hbox3.add(self.entry3)
hbox3.set_size_request(-1, 30)
vbox.pack_start(hbox3, False, False, 0)
self.update_button = gtk.Button()
self.update_button.set_label("Update")
self.update_button.show()
self.update_button.connect("clicked", self.callback_scale)
vbox.add(self.update_button)
self.config_load()
self.count_dumps()
if self.dumps==0:
md = gtk.MessageDialog(None, 0, gtk.MESSAGE_QUESTION, gtk.BUTTONS_YES_NO, "No slice data has been written to disk. You need to re-run the simulation with the dump_slices set to 1. Would you like to do this now? Note: This generates lots of files and will slow down the simulation.")
response = md.run()
if response == gtk.RESPONSE_YES:
inp_update_token_value("dump.inp", "#dump_1d_slices", "1",1)
ret= os.system(get_exe_command())
md.destroy()
self.count_dumps()
self.entry0.connect("changed", self.callback_edit)
self.entry1.connect("changed", self.callback_edit)
self.entry2.connect("changed", self.callback_edit)
self.entry3.connect("changed", self.callback_edit)
vbox.show_all()
self.add(vbox)
self.update(0)
if self.dumps!=0:
self.plot.do_plot()
print "CONVERT!!!!!!!!!!!",type(self.plot.plot_token.key_units)
self.set_border_width(10)
self.set_title("Compare")
self.set_icon_from_file(os.path.join(get_image_file_path(),"image.jpg"))
self.connect('key_press_event', self.on_key_press_event)
self.show()
def init(self):
self.fig = Figure(figsize=(5,4), dpi=100)
self.ax1=None
self.show_key=True
self.hbox=gtk.HBox()
self.exe_command = get_exe_command()
self.edit_list=[]
self.line_number=[]
gui_pos=0
gui_pos=gui_pos+1
self.draw_graph()
canvas = FigureCanvas(self.fig) # a gtk.DrawingArea
#canvas.set_background('white')
#canvas.set_facecolor('white')
canvas.figure.patch.set_facecolor('white')
canvas.set_size_request(500, 150)
canvas.show()
tooltips = gtk.Tooltips()
toolbar = gtk.Toolbar()
#toolbar.set_orientation(gtk.ORIENTATION_VERTICAL)
toolbar.set_style(gtk.TOOLBAR_ICONS)
toolbar.set_size_request(-1, 50)
tool_bar_pos=0
save = gtk.ToolButton(gtk.STOCK_SAVE)
tooltips.set_tip(save, "Save image")
save.connect("clicked", self.callback_save)
toolbar.insert(save, tool_bar_pos)
tool_bar_pos=tool_bar_pos+1
hide_key = gtk.ToolButton(gtk.STOCK_INFO)
tooltips.set_tip(hide_key, "Hide key")
hide_key.connect("clicked", self.callback_hide_key)
toolbar.insert(hide_key, tool_bar_pos)
tool_bar_pos=tool_bar_pos+1
image = gtk.Image()
image.set_from_file(os.path.join(get_image_file_path(),"play.png"))
save = gtk.ToolButton(image)
tooltips.set_tip(save, "Run simulation")
save.connect("clicked", self.callback_refresh)
toolbar.insert(save, tool_bar_pos)
tool_bar_pos=tool_bar_pos+1
plot_toolbar = NavigationToolbar(canvas, self)
plot_toolbar.show()
box=gtk.HBox(True, 1)
box.set_size_request(500,-1)
box.show()
box.pack_start(plot_toolbar, True, True, 0)
tb_comboitem = gtk.ToolItem();
tb_comboitem.add(box);
tb_comboitem.show()
toolbar.insert(tb_comboitem, tool_bar_pos)
tool_bar_pos=tool_bar_pos+1
sep = gtk.SeparatorToolItem()
sep.set_draw(False)
sep.set_expand(True)
toolbar.insert(sep, tool_bar_pos)
sep.show()
tool_bar_pos=tool_bar_pos+1
toolbar.show_all()
window_main_vbox=gtk.VBox()
window_main_vbox.pack_start(toolbar, False, True, 0)
#self.attach(toolbar, 0, 1, 0, 1)
tool_bar_pos=tool_bar_pos+1
self.hbox.pack_start(canvas, True, True, 0)
#self.attach(canvas, 1, 3, 0, 1)
vbox = gtk.VBox(False, 2)
#spacer
label=gtk.Label(" \n\n ")
#self.attach(label, 4, 5, 1, 2,gtk.SHRINK ,gtk.SHRINK)
vbox.pack_start(label, False, False, 0)
label.show()
hbox = gtk.HBox(False, 2)
hbox.show()
self.hbox.pack_start(vbox, False, False, 0)
#self.attach(vbox, 3, 4, 0, 1,gtk.SHRINK ,gtk.SHRINK)
vbox.show()
window_main_vbox.add(self.hbox)
self.add(window_main_vbox)
self.set_title("Quantum Efficency calculator - (www.opvdm.com)")
self.set_icon_from_file(os.path.join(get_image_file_path(),"qe.png"))
self.connect("delete-event", self.callback_close)
self.set_position(gtk.WIN_POS_CENTER)
def update_graph(self):
cmd = get_exe_command() + ' --onlypos'
# ret= os.system(cmd)
self.fig.clf()
self.draw_graph()
self.fig.canvas.draw()
def run_simulation(self,data): cmd = get_exe_command()+' --onlypos' os.system(cmd) self.update_graph()
def run_now(self):
self.exe_command(get_sim_path(), get_exe_command(), background=False)
def command_args(argc,argv): if argc>=2: if argv[1]=="--help": print "Usage: opvdm [option] src_file dest_file" print "" print "Options:" print "\t--version\tdisplays the current version" print "\t--help\t\tdisplays the help" print "\t--export\texport a simulation to a gz file" print "\t--import\timport a simulation from a .opvdm file" print "\t--patch\tpatch an .opvdm file with an older .opvdm file" print "\t\t\tusage --import abc.opvdm ./path/to/output/ " print "\t--clone\t\tgenerate a clean simulation in the current directory" print "\t--clean\t\tcleans the current simulation directory deleting .dat files and scan dirs" print "\t--dump-tab (output file)\t\tdumps simulation parameters as jpg" print "\t--import-scandirs\t\tOnly imports the scan directories" print "\t--clean-scandirs\t\tDeletes the content of all scan dirs" print "\t--scan-plot\t\truns an oplot file" print "\t\t\tusage --scan-plot /path/to/oplot/file.oplot " print "\t--run-scan\t\truns a scan" print "\t\t\tusage --run-scan /path/containing/base/files/ /path/to/scan/dir/ " print "" print "Additional information about opvdm is available at http://www.opvdm.com." print "" print "Report bugs to: [email protected]" sys.exit(0) if argv[1]=="--version": print ver() sys.exit(0) if argv[1]=="--import-scandirs": import_scan_dirs(os.getcwd(),argv[2]) exit(0) if argv[1]=="--export": export_as(argv[2]) sys.exit(0) if argv[1]=="--dump-tab": export_as(argv[2]) sys.exit(0) if argv[1]=="--import": import_archive(argv[2],os.path.join(os.getcwd(),"sim.opvdm"),False) sys.exit(0) if argv[1]=="--patch": import_archive(argv[2],argv[3],True) sys.exit(0) if argv[1]=="--clone": opvdm_clone() sys.exit(0) if argv[1]=="--clone-src": opvdm_copy_src(argv[2]) sys.exit(0) if argv[1]=="--file_info": data=plot_data() data.dump_file() sys.exit(0) if argv[1]=="--clean": clean_sim_dir() sys.exit(0) if argv[1]=="--clean-scandirs": clean_scan_dirs(os.getcwd()) sys.exit(0) if argv[1]=="--server": obj=udp_server() obj.start() if argv[1]=="--client": client=udp_client() client.init() if argv[1]=="--make-man": make_man() sys.exit(0) if argv[1]=="--run-scan": scan_dir_path=argv[3] #program file program_list=[] base_dir=argv[2] #base dir exe_command = get_exe_command() scan_item_load(os.path.join(scan_dir_path,"scan_items.inp")) tree_load_program(program_list,scan_dir_path) watch_dir=os.path.join(os.getcwd(),scan_dir_path) #print program_list,pwd,scan_dir_path #sys.exit(0) #print pwd,scan_dir_path #print os.getcwd(),os.path.join(scan_dir_path) #tree_gen(program_list,os.getcwd(),os.path.join(os.getcwd(),"suns")) flat_list=[] tree_gen(flat_list,program_list,base_dir,scan_dir_path) commands=[] server_find_simulations_to_run(commands,scan_dir_path) myserver=server() myserver.init(watch_dir) myserver.clear_cache() for i in range(0, len(commands)): myserver.add_job(commands[i]) print "Adding job"+commands[i] myserver.simple_run(exe_command) sys.exit(0) if argv[1]=="--scan-plot": plot_token=plot_state() oplot_file=argv[2] if plot_load_info(plot_token,oplot_file)==True: print "file0=",plot_token.file0,"<" plot_files, plot_labels, save_file = scan_gen_plot_data(plot_token,os.path.dirname(oplot_file)) print "written data to",save_file else: print "Problem loading oplot file" sys.exit(0)
def command_args(argc,argv):
if argc>=2:
if argv[1]=="--help":
print(_("Usage: gpvdm [option] src_file dest_file"))
print("")
print(_("Options:"))
print(_("\t--version\t\tdisplays the current version"))
print(_("\t--help\t\t\tdisplays the help"))
print(_("\t--export\t\texport a simulation to a gz file"))
print(_("\t--import\t\timport a simulation from a .gpvdm file"))
print(_("\t--patch\t\t\tpatch an .gpvdm file with an older .gpvdm file"))
print(_("\t\t\t\tusage --import abc.gpvdm ./path/to/output/ "))
print(_("\t--clone\t\t\tgenerate a clean simulation in the current directory"))
print(_("\t--clean\t\t\tcleans the current simulation directory deleting .dat files but not scan dirs"))
print(_("\t--dump-tab\t\tdumps simulation parameters as jpg"))
print(_("\t\t\t\tusage --dump-tab output_path "))
print(_("\t--import-scandirs\tOnly imports the scan directories"))
print(_("\t--clean-scandirs\tDeletes the content of all scan dirs"))
print(_("\t--scan-plot\t\truns an oplot file"))
print(_("\t\t\t\tusage --scan-plot /path/to/oplot/file.oplot "))
print(_("\t--run-scan\t\truns a scan"))
print(_("\t\t\t\tusage --run-scan /path/containing/base/files/ /path/to/scan/dir/ "))
print(_("\t--sync-ver\t\truns a scan"))
print(_("\t--edit-value\t\tedits a value in a .gpvdm archive"))
print(_("\t\t\t\tusage --edit-value /path/to/sim.gpvdm #token_to_change new_value "))
print(_("\t\t\t\tchanges the version of input file"))
print(_("\t--replace\t\treplaces file in device lib"))
if enable_cluster()==True:
print(_("\t--server\t\tRun as server node for cluster"))
print(_("\t--server\t\tRun as client node for cluster"))
print("\t\t\t")
print("")
print(_("Additional information about gpvdm is available at http://www.gpvdm.com."))
print("")
print(_("Report bugs to: [email protected]"))
sys.exit(0)
if check_params(argv,"--version",0)==True:
print(version())
sys.exit(0)
if check_params(argv,"--ver",0)==True:
print(ver())
sys.exit(0)
if check_params(argv,"--import-scandirs",1)==True:
import_scan_dirs(os.getcwd(),argv[2])
exit(0)
if check_params(argv,"--replace",1)==True:
device_lib_replace(argv[2])
exit(0)
if check_params(argv,"--export",1)==True:
export_as(argv[2])
sys.exit(0)
if check_params(argv,"--dump-tab",1)==True:
export_as(argv[2])
sys.exit(0)
if check_params(argv,"--import",1)==True:
import_archive(argv[2],os.path.join(os.getcwd(),"sim.gpvdm"),False)
sys.exit(0)
if check_params(argv,"--patch",2)==True:
import_archive(argv[2],argv[3],True)
sys.exit(0)
if check_params(argv,"--clone",0)==True:
gpvdm_clone(os.getcwd(),True)
sys.exit(0)
if check_params(argv,"--clone-src",1)==True:
gpvdm_copy_src(argv[2])
sys.exit(0)
if check_params(argv,"--edit-value",3)==True:
inp_update(argv[2], argv[3], argv[4])
sys.exit(0)
#if check_params(argv,"--file_info",0)==True:
# data=plot_data()
# data.dump_file()
# sys.exit(0)
if check_params(argv,"--clean",0)==True:
clean_sim_dir()
sys.exit(0)
if check_params(argv,"--clean-scandirs",0)==True:
clean_scan_dirs(os.getcwd())
sys.exit(0)
if check_params(argv,"--make-man",1)==True:
make_man()
sys.exit(0)
if check_params(argv,"--sync-ver",0)==True:
ver_sync_ver()
sys.exit(0)
if check_params(argv,"--run-scan",2)==True:
scan_dir_path=argv[3] #program file
program_list=[]
base_dir=argv[2] #base dir
exe_command = get_exe_command()
tree_load_program(program_list,scan_dir_path)
watch_dir=os.path.join(os.getcwd(),scan_dir_path)
#print(program_list,pwd,scan_dir_path)
#sys.exit(0)
#print(pwd,scan_dir_path)
#print(os.getcwd(),os.path.join(scan_dir_path))
#tree_gen(program_list,os.getcwd(),os.path.join(os.getcwd(),"suns"))
flat_list=[]
tree_gen(flat_list,program_list,base_dir,scan_dir_path)
commands=[]
server_find_simulations_to_run(commands,scan_dir_path)
myserver=server()
myserver.init(watch_dir)
myserver.clear_cache()
for i in range(0, len(commands)):
myserver.add_job(commands[i],"")
print("Adding job"+commands[i])
myserver.simple_run(exe_command)
sys.exit(0)
if check_params(argv,"--scan-plot",1)==True:
plot_token=plot_state()
oplot_file=argv[2]
if plot_load_info(plot_token,oplot_file)==True:
print("file0=",plot_token.file0,"<")
plot_files, plot_labels, save_file = scan_gen_plot_data(plot_token,os.path.dirname(oplot_file))
print("written data to",save_file)
else:
print("Problem loading oplot file")
sys.exit(0)
def load(self):
self.clean_menu()
self.last_page=0
#self.setTabsClosable(True)
self.setMovable(True)
if (os.path.exists("sim.gpvdm")==True) and (os.path.normcase(os.getcwd())!=os.path.normcase(get_bin_path())):
self.finished_loading=False
#self.progress.init()
#self.progress.show()
#self.progress.start()
#self.progress.set_text("Loading..")
#process_events()
self.clear()
# dos_files=inp_get_token_value("device_epitaxy.inp", "#layers")
widget=tab_main()
self.addTab(widget,_("Device structure"))
lines=[]
pos=0
if inp_load_file(lines,"gui_config.inp")==True:
pos=0
tab_number=0
tabs=(len(lines)-3)/2
while (1):
add_to_widget=False
ret,pos=inp_get_next_token_array(lines,pos)
if ret[0]=="#ver":
break
file_name=ret[0]
if file_name[0]=="#":
file_name=file_name[1:]
name=inp_file_to_description(file_name)
if name==False:
print("name not found",name)
break
visible=bool(int(ret[1]))
#self.progress.set_fraction(float(tab_number)/float(tabs))
tab_number=tab_number+1
#self.progress.set_text(_("Loading ")+name)
#process_events()
if file_name=="lumo0.inp":
widget=tab_bands()
#tab.update()
add_to_widget=True
widget.visible=visible
widget.label_name=name
widget.file_name=file_name
elif file_name=="epitaxy.inp":
widget=dos_main()
widget.update()
add_to_widget=True
widget.visible=visible
widget.label_name=name
widget.file_name=file_name
elif file_name=="pl0.inp":
widget=pl_main()
widget.update()
add_to_widget=True
widget.visible=visible
widget.label_name=name
widget.file_name=file_name
elif inp_isfile(file_name)==True:
add_to_widget=True
widget=tab_class()
widget.init(file_name,name)
# add_to_widget=True
# tab=
# tab.visible=visible
# tab.init(file_name,name)
# tab.label_name=name
# tab.file_name=file_name
if add_to_widget==True:
mytext=name
if len(mytext)<10:
for i in range(len(mytext),10):
mytext=mytext+" "
self.addTab(widget,mytext)
self.terminal=tab_terminal()
self.terminal.init()
self.addTab(self.terminal,"Terminal")
self.terminal.run(os.getcwd(),get_exe_command()+" --version --html")
self.add_info_page()
return True
self.finished_loading=True
#self.progress.stop()
#self.progress.set_fraction(0.0)
self.goto_page("tab_main")
else:
self.add_info_page()
self.goto_page(_("Information"))
return False
def command_args(argc, argv):
if test_arg_for_sim_file() != False:
return
if argc >= 2:
if args.version:
print(version())
sys.exit(0)
elif args.ver:
print(ver())
sys.exit(0)
elif args.syncver:
ver_sync_ver()
sys.exit(0)
elif args.importscandirs:
import_scan_dirs(os.getcwd(), args.importscandirs[0])
exit(0)
elif args.replace:
device_lib_replace(args.replace[0], dir_name=args.replace[1])
exit(0)
elif args.delete:
device_lib_delete(args.delete[0], dir_name=args.delete[1])
exit(0)
elif args.clean:
clean_sim_dir()
sys.exit(0)
elif args.export:
export_as(args.export[0])
sys.exit(0)
elif args.makeman:
make_man()
sys.exit(0)
elif args.cleanscandirs:
clean_scan_dirs(os.getcwd())
sys.exit(0)
elif args.importfile:
import_archive(args.importfile[0],
os.path.join(os.getcwd(), "sim.gpvdm"), False)
sys.exit(0)
elif args.dumptab:
export_as(args.dumptab[0])
sys.exit(0)
elif args.patch:
import_archive(args.patch[0], args.patch[1], True)
sys.exit(0)
elif args.patchfile:
patch_file(args.patchfile[0], args.patchfile[1], args.patchfile[2])
sys.exit(0)
elif args.clone:
gpvdm_clone(os.getcwd(), copy_dirs=True)
sys.exit(0)
elif args.matcompress:
archive_materials(os.path.join(os.getcwd(), "materials"))
sys.exit(0)
elif args.clonesrc:
gpvdm_copy_src(clone - src[0])
sys.exit(0)
elif args.editvalue:
inp_update_token_value(args.editvalue[0], args.editvalue[1],
args.editvalue[2])
sys.exit(0)
elif args.load:
set_sim_path(os.path.dirname(args.load[0]))
#print("a")
elif args.encrypt:
inp_encrypt(args.encrypt[0])
sys.exit(0)
elif args.extract:
archive_decompress("sim.gpvdm")
sys.exit(0)
elif args.scanplot:
plot_token = dat_file()
oplot_file = args.scan - plot[0]
if plot_load_info(plot_token, oplot_file) == True:
print("file0=", plot_token.file0, "<")
plot_files, plot_labels, save_file = scan_gen_plot_data(
plot_token, os.path.dirname(oplot_file))
print("written data to", save_file)
else:
print("Problem loading oplot file")
sys.exit(0)
if args.unpack:
archive_unpack(args.unpack[0])
sys.exit()
if args.runscan:
set_gui(False)
scan_dir_path = args.runscan[0] #program file
exe_command = get_exe_command()
program_list = tree_load_program(scan_dir_path)
watch_dir = os.path.join(os.getcwd(), scan_dir_path)
commands = []
#server_find_simulations_to_run(commands,scan_dir_path)
commands = tree_load_flat_list(scan_dir_path)
print(commands)
myserver = base_server()
myserver.base_server_init(watch_dir)
for i in range(0, len(commands)):
myserver.base_server_add_job(commands[i], "")
print("Adding job" + commands[i])
myserver.print_jobs()
myserver.simple_run()
#simple_run(exe_command)
sys.exit(0)
if args.scanarchive:
set_gui(False)
scan_archive(args.scanarchive[0])
sys.exit(0)
if args.buildscan:
set_gui(False)
scan_items_clear()
scan_items_populate_from_known_tokens()
scan_items_populate_from_files()
scan_dir_path = args.buildscan[0] #program file
base_dir = args.buildscan[1] #base dir
build_scan(scan_dir_path, base_dir)
sys.exit(0)
if args.scanbuildvectors:
set_gui(False)
scan_ml_build_vector(args.scanbuildvectors[0])
sys.exit(0)
if args.buildnestedscan:
set_gui(False)
scan_items_clear()
scan_items_populate_from_known_tokens()
scan_items_populate_from_files()
scan_dir_path = os.path.abspath(
args.buildnestedscan[0]) #program file
sim_to_nest = os.path.abspath(
args.buildnestedscan[1]) #program file
scan_build_nested_simulation(
scan_dir_path, os.path.join(os.getcwd(), sim_to_nest))
sys.exit(0)
def server_check_user(self): command=multiplatform_exe_command(get_exe_command()+" --use") os.system(command)
def init(self):
return False
self.dumps = 0
self.plot_token = dat_file()
vbox = gtk.VBox()
self.multi_plot = False
self.log_scale_y = "auto"
menu_items = (
("/_Options", None, None, 0, "<Branch>"),
("/Options/_Subtract 0th frame", None,
self.callback_toggle_subtract, 0, "<ToggleItem>", "gtk-save"),
("/_Axis/_Multiplot", None, self.callback_multi_plot, 0,
"<ToggleItem>", "gtk-save"),
("/_Axis/_Set y axis to maximum", None, self.callback_set_min_max,
0, "<ToggleItem>", "gtk-save"),
)
self.plot.item_factory.create_items(menu_items)
primary_hbox.add(self.entry0)
sim_vbox.add(primary_hbox)
secondary_hbox = gtk.HBox()
text = gtk.Label("Secondary dir")
secondary_hbox.add(text)
self.entry1 = gtk.combo_box_entry_new_text()
self.entry1.show()
for i in range(0, len(self.snapshot_list)):
self.entry1.append_text(self.snapshot_list[i])
secondary_hbox.add(self.entry1)
sim_vbox.add(secondary_hbox)
sim_vbox.show()
#hbox.set_size_request(-1, 30)
vbox.pack_start(sim_vbox, False, False, 0)
hbox2 = gtk.HBox()
text = gtk.Label("Files to plot")
hbox2.add(text)
self.entry2 = gtk.Entry()
self.entry2.set_text("pt_map nt_map")
self.entry2.show()
hbox2.add(self.entry2)
hbox2.set_size_request(-1, 30)
vbox.pack_start(hbox2, False, False, 0)
hbox3 = gtk.HBox()
text = gtk.Label("Exprimental data")
hbox3.add(text)
self.entry3 = gtk.Entry()
self.entry3.set_text("")
self.entry3.show()
hbox3.add(self.entry3)
hbox3.set_size_request(-1, 30)
vbox.pack_start(hbox3, False, False, 0)
self.update_button = gtk.Button()
self.update_button.set_label("Update")
self.update_button.show()
self.update_button.connect("clicked", self.callback_scale)
vbox.add(self.update_button)
self.config_load()
self.count_dumps()
if self.dumps == 0:
md = gtk.MessageDialog(
None, 0, gtk.MESSAGE_QUESTION, gtk.BUTTONS_YES_NO,
"No slice data has been written to disk. You need to re-run the simulation with the dump_slices set to 1. Would you like to do this now? Note: This generates lots of files and will slow down the simulation."
)
response = md.run()
if response == gtk.RESPONSE_YES:
inp_update_token_value("dump.inp", "#dump_1d_slices", "1")
os.system(get_exe_command())
md.destroy()
self.count_dumps()
self.entry0.connect("changed", self.callback_edit)
self.entry1.connect("changed", self.callback_edit)
self.entry2.connect("changed", self.callback_edit)
self.entry3.connect("changed", self.callback_edit)
vbox.show_all()
self.add(vbox)
self.update(0)
if self.dumps != 0:
self.plot.do_plot()
print("CONVERT!!!!!!!!!!!", type(self.plot.plot_token.key_units))
self.set_border_width(10)
self.set_title("Compare")
self.set_icon_from_file(
os.path.join(get_image_file_path(), "image.jpg"))
self.connect('key_press_event', self.on_key_press_event)
self.show()
def update_graph(self): cmd = get_exe_command()+' --onlypos' # ret= os.system(cmd) self.fig.clf() self.draw_graph() self.fig.canvas.draw()
