def setup(self, ctx):
self._name = None
self.is_first_run = True
self.should_run = False
assert ctx.spec.settings is not None
self.names = set(setting["name"] for setting in ctx.spec.settings)
if "name" in settingdict:
pass
elif namefun is not None:
self._name = namefun(ctx)
else:
self.should_run = True
self._append_view(TextView(self.header_str))
base = "preproc"
suggestion = base
index = 1
while suggestion in self.names:
suggestion = f"{base}{index}"
index += 1
self.input_view = TextInputView(
text=suggestion,
isokfun=lambda text: forbidden_chars.search(text) is None)
self._append_view(self.input_view)
self._append_view(SpacerView(1))
def setup(self, ctx):
if not hasattr(ctx.spec.models[-1],
"contrasts") or ctx.spec.models[-1].contrasts is None:
ctx.spec.models[-1].contrasts = []
self.names = set(contrast["name"]
for contrast in ctx.spec.models[-1].contrasts
if "name" in contrast)
base = "contrast"
index = 1
suggestion = f"{base}{index}"
while suggestion in self.names:
suggestion = f"{base}{index}"
index += 1
self._append_view(TextView("Specify contrast name"))
self.input_view = TextInputView(
text=suggestion,
isokfun=lambda text: forbidden_chars.search(text) is None)
self._append_view(self.input_view)
self._append_view(SpacerView(1))
self.value = None
def setup(self, ctx):
if (not hasattr(ctx.spec.features[-1], "contrasts")
or ctx.spec.features[-1].contrasts is None):
ctx.spec.features[-1].contrasts = []
if len(ctx.spec.features[-1].contrasts) == 0:
self._append_view(TextView("Specify contrasts"))
self._append_view(SpacerView(1))
self.names = set(
contrast.get("name")
for contrast in ctx.spec.features[-1].contrasts)
base = "contrast"
index = 1
suggestion = f"{base}{index}"
while suggestion in self.names:
suggestion = f"{base}{index}"
index += 1
self._append_view(TextView("Specify contrast name"))
self.input_view = TextInputView(
text=suggestion,
isokfun=lambda text: forbidden_chars.search(text) is None)
self._append_view(self.input_view)
self._append_view(SpacerView(1))
def setup(self, ctx):
if ctx.spec.analyses[-1].contrasts is None:
index = 1
else:
index = min(1, len(ctx.spec.analyses[-1].contrasts))
suggestion = make_name_suggestion("contrast", index=index)
self._append_view(TextView("Specify contrast name"))
self.input_view = TextInputView(text=suggestion)
self._append_view(self.input_view)
self._append_view(SpacerView(1))
self.value = None
def setup(self, ctx):
self._append_view(TextView("Specify analysis name"))
assert ctx.spec.analyses is not None
self.names = set(analysis.name for analysis in ctx.spec.analyses)
index = 0
for analysis in ctx.spec.analyses:
assert analysis.level is not None
if analysis.level == "higher" and analysis.across == "subject":
index += 1
suggestion = make_name_suggestion("group", "analysis", index=index)
self.input_view = TextInputView(text=suggestion)
self._append_view(self.input_view)
self._append_view(SpacerView(1))
def setup(self, ctx):
self._append_view(TextView("Specify analysis name"))
assert ctx.spec.analyses is not None and len(ctx.spec.analyses) > 0
self.names = set(analysis.name for analysis in ctx.spec.analyses)
baseSuggestion = self.nameSuggestionByAnalysisType[
ctx.spec.analyses[-1].type]
suggestion = baseSuggestion
index = 1
while suggestion in self.names:
suggestion = f"{baseSuggestion}_{index}"
index += 1
self.input_view = TextInputView(text=suggestion)
self._append_view(self.input_view)
self._append_view(SpacerView(1))
def setup(self, ctx):
self._append_view(TextView("Specify feature name"))
assert ctx.spec.features is not None and len(ctx.spec.features) > 0
self.names = set(feature.name for feature in ctx.spec.features)
base = self.suggestions_by_type[ctx.spec.features[-1].type]
suggestion = base
index = 1
while suggestion in self.names:
suggestion = f"{base}{index}"
index += 1
self.input_view = TextInputView(
text=suggestion,
isokfun=lambda text: forbidden_chars.search(text) is None)
self._append_view(self.input_view)
self._append_view(SpacerView(1))
def setup(self, ctx):
self._append_view(TextView("Specify model name"))
assert ctx.spec.models is not None and len(ctx.spec.models) > 0
self.names = set(model.name for model in ctx.spec.models)
base = "model"
suggestion = base
index = 1
while suggestion in self.names:
suggestion = f"{base}{index}"
index += 1
self.input_view = TextInputView(
text=suggestion,
isokfun=lambda text: forbidden_chars.search(text) is None)
self._append_view(self.input_view)
self._append_view(SpacerView(1))
def setup(self, ctx):
self.is_first_run = True
entites_in_path = get_entities_in_path(self.file_obj.path)
self.tags_obj = self.file_obj.tags
while len(self.ask_if_missing_entities) > 0:
entity = self.ask_if_missing_entities.pop(0)
if (hasattr(self.tags_obj, entity)
and getattr(self.tags_obj, entity) is None
and entity not in entites_in_path):
self.cur_entity = entity
break
if self.cur_entity is not None:
self._append_view(
TextView(f"No {self.cur_entity} name was specified"))
self._append_view(TextView(f"Specify the {self.cur_entity} name"))
suggestion = ""
if self.suggest_file_stem:
suggestion, _ = splitext(self.file_obj.path)
self.tagval_input_view = TextInputView(text=suggestion,
isokfun=self._isok)
self._append_view(self.tagval_input_view)
self._append_view(SpacerView(1))
def setup(self, ctx):
self.is_first_run = True
entites_in_path = get_entities_in_path(ctx.spec.files[-1].path)
tags = ctx.spec.files[-1].tags
while len(self.ask_if_missing_entities) > 0:
entity = self.ask_if_missing_entities.pop(0)
if entity in entites_in_path:
continue
if tags.get(entity) is not None:
continue
self.entity = entity
break
if self.entity is not None:
self.entity_str = self.entity
if self.entity_str in self.entity_display_aliases:
self.entity_str = self.entity_display_aliases[self.entity_str]
self._append_view(TextView(f"No {self.entity_str} name was specified"))
self._append_view(TextView(f"Specify the {self.entity_str} name"))
suggestion = ""
if self.suggest_file_stem:
suggestion, _ = splitext(ctx.spec.files[-1].path)
self.input_view = TextInputView(
text=suggestion, isokfun=lambda text: forbidden_chars.search(text) is None
)
self._append_view(self.input_view)
self._append_view(SpacerView(1))
def setup(self, ctx):
self._append_view(TextView(f"Specify the spatial map name"))
self.input_view = TextInputView(self.desc)
self._append_view(self.input_view)
self._append_view(SpacerView(1))