def do_submissions(userid, password, subject_list):
# read the configuration file
config_file_name = file_utils.get_config_file_name(__file__)
print("Reading configuration from file: " + config_file_name)
config = my_configparser.MyConfigParser()
config.read(config_file_name)
# process the subjects in the list
batch_submitter = BatchSubmitter()
batch_submitter.submit_jobs(userid, password, subject_list, config)
# submit jobs
submitter.submit_jobs(processing_stage)
if __name__ == '__main__':
logging.config.fileConfig(
file_utils.get_logging_config_file_name(__file__),
disable_existing_loggers=False)
# get ConnectomeDB credentials
userid = input("Connectome DB Username: "******"Connectome DB Password: "******"Reading configuration from file: " + config_file_name)
config = my_configparser.MyConfigParser()
config.read(config_file_name)
# get list of subjects to process
subject_file_name = 'subjectfiles' + os.sep + file_utils.get_subjects_file_name(
__file__)
module_logger.info("Retrieving subject list from: " + subject_file_name)
subject_list = ccf_subject.read_subject_info_list(subject_file_name,
separator=':')
# process the subjects in the list
batch_submitter = BatchSubmitter('3T')
batch_submitter.submit_jobs(userid, password, subject_list, config)
