class RepertoireModel:
def __init__(self):
self.processDirectory = True
self.num_operations = 0
self.operations_so_far = IntegerWrapper(0)
#self.ccfx = CCFXEntryPoint('/home/tang/research/linux/Repertoire/ccFinderx/ccfx', 40, False, True)
#self.ccfx = CCFXEntryPoint('/home/tang/nas11/research/ray/project/Repertoire/ccFinderx/ccfx', 40, False, True)
self.ccfx = CCFXEntryPoint('/if7/ct4ew/research/ray/project/Repertoire_new/ccFinderx/ccfx', 40, False, True)
self.flags = {"No":True, "Yes":False}
self.path = {}
self.isProcessDiff = False
self.tmpPath = None
self.outPath = None
def setDiffPath(self, path = None):
self.isProcessDiff = True
path = str(path)
if os.path.isdir(path):
self.ccfx.isDirectory = True
else:
self.ccfx.isDirectory = False
projNo = len(self.path)
proj = 'proj' + str(projNo)
self.path[proj] = path
# print self.path
return True
def setOutDirectory(self, path):
#Just setting the outer directory
path = str(path)
if not (path.startswith("/home") or path.startswith("~/")):
path = os.getcwd() + os.sep + path
if not os.path.isdir(path):
os.mkdir(path)
self.outPath = path
print "output files will be stored at " + self.outPath
return True
def setTmpDirectory(self, path):
path = str(path)
if not os.path.isdir(path):
os.mkdir(path)
self.tmpPath = path
print "output files will be stored at " + self.tmpPath
return True
def setSuffixes(self, jSuff = '', cSuff = '', hSuff = ''):
jSuff = str(jSuff)
cSuff = str(cSuff)
hSuff = str(hSuff)
if jSuff.startswith('.'):
jSuff = jSuff[1:]
if cSuff.startswith('.'):
cSuff = cSuff[1:]
if hSuff.startswith('.'):
hSuff = hSuff[1:]
self.suffixes = {
'java':jSuff,
'cxx':cSuff,
'hxx':hSuff,
}
self.filters = {
'java' : DiffFilter(jSuff),
'cxx' : DiffFilter(cSuff),
'hxx' : DiffFilter(hSuff)
}
def setCcfxDirectory(self, path):
path = str(path)
if not os.path.isdir(path):
return False
ccfx_binary = path + "/ccfx"
if os.path.exists(ccfx_binary):
self.ccfx.ccfxPath = ccfx_binary
return True
return False
def setCcfxToken(self, token_size):
self.ccfx.tokenSize = token_size
print "setting ccFinder token size = " + token_size
return True
def setCcfxFileSeparator(self, flag):
self.ccfx.fileSep = self.flags[str(flag)]
print "setting ccFinder file separator flag to %d" % (self.ccfx.fileSep)
return True
def setCcfxGroupSeparator(self, flag):
self.ccfx.grpSep = self.flags[str(flag)]
print "setting ccFinder group separator flag to %d" % (self.ccfx.grpSep)
return True
def filterDiffProj(self,proj):
path = self.path[proj]
self.num_operations = 3 * 2
self.num_operations += len(os.listdir(path)) * 3
self.operations_so_far = IntegerWrapper(0)
#for lang in ['java', 'cxx', 'hxx']:
for lang in ['cxx']:
#for lang in ['c']:
the_filter = self.filters[lang]
for i, file_name in enumerate(os.listdir(path)):
self.progress('Filtering {0} files'.format(lang))
input_path = path + os.sep + file_name
print file_name
print input_path
out_path = (self.pb.getFilterOutputPath(proj, lang) +
file_name + '.' + self.suffixes[lang])
print out_path
(ok, gotsome) = the_filter.filterDiff(input_path, out_path)
self.got_some[lang] = self.got_some[lang] and gotsome
if not ok:
return ('Error processing: ' + file_name, False)
self.operations_so_far.incr()
def filterDiffFile(self,diff_file):
# 3 different file formats, 2 operations each (filter/convert)
self.num_operations = 3 * 2
self.operations_so_far = IntegerWrapper(0)
for lang in ['java', 'cxx', 'hxx']:
the_filter = self.filters[lang]
self.progress('Filtering {0} files'.format(lang))
input_path = diff_file
out_path = (self.pb.getFilterOutputPath(proj, lang) +
os.path.basename(input_path) + '.' + self.suffixes[lang])
(ok, gotsome) = the_filter.filterDiff(input_path, out_path)
self.got_some[lang] = self.got_some[lang] and gotsome
if not ok:
return ('Error processing: ' + file_name, False)
self.operations_so_far.incr()
def progress(self,msg):
progressSoFar = (self.operations_so_far.value / float(self.num_operations))*100
print "%s..: %f" % (msg,progressSoFar)
def processDiffs(self,proj,path):
#self.got_some = {'java':True, 'cxx':True, 'hxx':True}
self.got_some = {'java':False, 'cxx':True, 'hxx':False}
self.pb = PathBuilder(self.tmpPath, force_clean = True)
if os.path.isdir(path) is True:
self.filterDiffProj(proj)
elif os.path.isfile(path) is True:
self.filterDiffFile(proj)
else:
return ('Invalid path : ' + path, False)
# Second, change each diff into ccFinder input format
converter = CCFXInputConverter()
progress = (self.operations_so_far.incr() / float(self.num_operations))*100
callback = lambda: self.progress('Converting to ccfx input format')
converter.convert(proj, self.pb, callback)
self.num_operations = 3 * 2
self.operations_so_far = IntegerWrapper(0)
return ("Converting diffs to ccFinder compatible format is done",True)
def processDiff(self):
for proj,path in self.path.items():
self.processDiffs(proj, path)
def runCCFinderSelf(self,proj,path):
print 'Chong Tang: In runCCFinderSelf() function ----'
clone_path = self.pb.getCCFXOutputPath()
# Third, call ccfx for each directory
worked = True
for lang in ['java', 'cxx', 'hxx']:
#print 'Chong Tang: In runCCFinerSelf for loop...'
#print 'Chong: got_some of java: ' + str(self.got_some['java'])
if not self.got_some[lang]:
self.progress('ccFinderX executing')
continue
#print 'Chong Tang: In runCCFinerSelf for loop, after if statement'
old_path = self.pb.getCCFXInputPath(proj, lang, False)
new_path = self.pb.getCCFXInputPath(proj, lang, True)
tmp_old_out = clone_path + self.pb.getCCFXOutputFileName(
lang, is_new = False, is_tmp = True)
tmp_new_out = clone_path + self.pb.getCCFXOutputFileName(
lang, is_new = True, is_tmp = True)
old_out = clone_path + self.pb.getCCFXOutputFileName(
lang, is_new = False, is_tmp = False)
new_out = clone_path + self.pb.getCCFXOutputFileName(
lang, is_new = True, is_tmp = False)
print 'Chong Tang: before first processPairSelf calling'
worked = worked and self.ccfx.processPairSelf(
old_path, tmp_old_out, old_out, lang)
print 'Chong Tang: after first processPairSelf calling'
self.progress('ccFinderX executing')
print 'Chong Tang: before second processPairSelf calling'
worked = worked and self.ccfx.processPairSelf(
new_path, tmp_new_out, new_out, lang)
print 'Chong Tang: after second processPairSelf calling'
self.progress('ccFinderX executing')
if not worked:
return ('ccFinderX execution failed', False)
self.runRep(proj)
# #new and old for 3 langs
def runRep(self,proj):
print "Repertoire filtering...."
self.num_operations = 3 * 2
self.operations_so_far = IntegerWrapper(0)
for lang in ['java', 'cxx', 'hxx']:
if not self.got_some[lang]:
self.progress('Repertoire filtering based on operation')
continue
for is_new in [True, False]:
output = convert_ccfx_output(self.pb,proj,lang, is_new)
rep_out_path = self.pb.getRepertoireOutputPath(lang, is_new)
suffix = '_old.txt'
if is_new:
suffix = '_new.txt'
output.writeToFile(rep_out_path + lang + suffix)
self.progress('Repertoire filtering based on operation')
print "Processing successful!!"
return ('Processing successful', True)
class RepertoireModel:
def __init__(self):
self.processDirectory = True
self.num_operations = 0
self.operations_so_far = IntegerWrapper(0)
#self.ccfx = CCFXEntryPoint('/home/tang/research/linux/Repertoire/ccFinderx/ccfx', 40, False, True)
#self.ccfx = CCFXEntryPoint('/home/tang/nas11/research/ray/project/Repertoire/ccFinderx/ccfx', 40, False, True)
self.ccfx = CCFXEntryPoint(
'/if7/ct4ew/research/ray/project/Repertoire_new/ccFinderx/ccfx',
40, False, True)
self.flags = {"No": True, "Yes": False}
self.path = {}
self.isProcessDiff = False
self.tmpPath = None
self.outPath = None
def setDiffPath(self, path=None):
self.isProcessDiff = True
path = str(path)
if os.path.isdir(path):
self.ccfx.isDirectory = True
else:
self.ccfx.isDirectory = False
projNo = len(self.path)
proj = 'proj' + str(projNo)
self.path[proj] = path
# print self.path
return True
def setOutDirectory(self, path):
#Just setting the outer directory
path = str(path)
if not (path.startswith("/home") or path.startswith("~/")):
path = os.getcwd() + os.sep + path
if not os.path.isdir(path):
os.mkdir(path)
self.outPath = path
print "output files will be stored at " + self.outPath
return True
def setTmpDirectory(self, path):
path = str(path)
if not os.path.isdir(path):
os.mkdir(path)
self.tmpPath = path
print "output files will be stored at " + self.tmpPath
return True
def setSuffixes(self, jSuff='', cSuff='', hSuff=''):
jSuff = str(jSuff)
cSuff = str(cSuff)
hSuff = str(hSuff)
if jSuff.startswith('.'):
jSuff = jSuff[1:]
if cSuff.startswith('.'):
cSuff = cSuff[1:]
if hSuff.startswith('.'):
hSuff = hSuff[1:]
self.suffixes = {
'java': jSuff,
'cxx': cSuff,
'hxx': hSuff,
}
self.filters = {
'java': DiffFilter(jSuff),
'cxx': DiffFilter(cSuff),
'hxx': DiffFilter(hSuff)
}
def setCcfxDirectory(self, path):
path = str(path)
if not os.path.isdir(path):
return False
ccfx_binary = path + "/ccfx"
if os.path.exists(ccfx_binary):
self.ccfx.ccfxPath = ccfx_binary
return True
return False
def setCcfxToken(self, token_size):
self.ccfx.tokenSize = token_size
print "setting ccFinder token size = " + token_size
return True
def setCcfxFileSeparator(self, flag):
self.ccfx.fileSep = self.flags[str(flag)]
print "setting ccFinder file separator flag to %d" % (
self.ccfx.fileSep)
return True
def setCcfxGroupSeparator(self, flag):
self.ccfx.grpSep = self.flags[str(flag)]
print "setting ccFinder group separator flag to %d" % (
self.ccfx.grpSep)
return True
def filterDiffProj(self, proj):
path = self.path[proj]
self.num_operations = 3 * 2
self.num_operations += len(os.listdir(path)) * 3
self.operations_so_far = IntegerWrapper(0)
#for lang in ['java', 'cxx', 'hxx']:
for lang in ['cxx']:
#for lang in ['c']:
the_filter = self.filters[lang]
for i, file_name in enumerate(os.listdir(path)):
self.progress('Filtering {0} files'.format(lang))
input_path = path + os.sep + file_name
print file_name
print input_path
out_path = (self.pb.getFilterOutputPath(proj, lang) +
file_name + '.' + self.suffixes[lang])
print out_path
(ok, gotsome) = the_filter.filterDiff(input_path, out_path)
self.got_some[lang] = self.got_some[lang] and gotsome
if not ok:
return ('Error processing: ' + file_name, False)
self.operations_so_far.incr()
def filterDiffFile(self, diff_file):
# 3 different file formats, 2 operations each (filter/convert)
self.num_operations = 3 * 2
self.operations_so_far = IntegerWrapper(0)
for lang in ['java', 'cxx', 'hxx']:
the_filter = self.filters[lang]
self.progress('Filtering {0} files'.format(lang))
input_path = diff_file
out_path = (self.pb.getFilterOutputPath(proj, lang) +
os.path.basename(input_path) + '.' +
self.suffixes[lang])
(ok, gotsome) = the_filter.filterDiff(input_path, out_path)
self.got_some[lang] = self.got_some[lang] and gotsome
if not ok:
return ('Error processing: ' + file_name, False)
self.operations_so_far.incr()
def progress(self, msg):
progressSoFar = (self.operations_so_far.value /
float(self.num_operations)) * 100
print "%s..: %f" % (msg, progressSoFar)
def processDiffs(self, proj, path):
#self.got_some = {'java':True, 'cxx':True, 'hxx':True}
self.got_some = {'java': False, 'cxx': True, 'hxx': False}
self.pb = PathBuilder(self.tmpPath, force_clean=True)
if os.path.isdir(path) is True:
self.filterDiffProj(proj)
elif os.path.isfile(path) is True:
self.filterDiffFile(proj)
else:
return ('Invalid path : ' + path, False)
# Second, change each diff into ccFinder input format
converter = CCFXInputConverter()
progress = (self.operations_so_far.incr() /
float(self.num_operations)) * 100
callback = lambda: self.progress('Converting to ccfx input format')
converter.convert(proj, self.pb, callback)
self.num_operations = 3 * 2
self.operations_so_far = IntegerWrapper(0)
return ("Converting diffs to ccFinder compatible format is done", True)
def processDiff(self):
for proj, path in self.path.items():
self.processDiffs(proj, path)
def runCCFinderSelf(self, proj, path):
print 'Chong Tang: In runCCFinderSelf() function ----'
clone_path = self.pb.getCCFXOutputPath()
# Third, call ccfx for each directory
worked = True
for lang in ['java', 'cxx', 'hxx']:
#print 'Chong Tang: In runCCFinerSelf for loop...'
#print 'Chong: got_some of java: ' + str(self.got_some['java'])
if not self.got_some[lang]:
self.progress('ccFinderX executing')
continue
#print 'Chong Tang: In runCCFinerSelf for loop, after if statement'
old_path = self.pb.getCCFXInputPath(proj, lang, False)
new_path = self.pb.getCCFXInputPath(proj, lang, True)
tmp_old_out = clone_path + self.pb.getCCFXOutputFileName(
lang, is_new=False, is_tmp=True)
tmp_new_out = clone_path + self.pb.getCCFXOutputFileName(
lang, is_new=True, is_tmp=True)
old_out = clone_path + self.pb.getCCFXOutputFileName(
lang, is_new=False, is_tmp=False)
new_out = clone_path + self.pb.getCCFXOutputFileName(
lang, is_new=True, is_tmp=False)
print 'Chong Tang: before first processPairSelf calling'
worked = worked and self.ccfx.processPairSelf(
old_path, tmp_old_out, old_out, lang)
print 'Chong Tang: after first processPairSelf calling'
self.progress('ccFinderX executing')
print 'Chong Tang: before second processPairSelf calling'
worked = worked and self.ccfx.processPairSelf(
new_path, tmp_new_out, new_out, lang)
print 'Chong Tang: after second processPairSelf calling'
self.progress('ccFinderX executing')
if not worked:
return ('ccFinderX execution failed', False)
self.runRep(proj)
# #new and old for 3 langs
def runRep(self, proj):
print "Repertoire filtering...."
self.num_operations = 3 * 2
self.operations_so_far = IntegerWrapper(0)
for lang in ['java', 'cxx', 'hxx']:
if not self.got_some[lang]:
self.progress('Repertoire filtering based on operation')
continue
for is_new in [True, False]:
output = convert_ccfx_output(self.pb, proj, lang, is_new)
rep_out_path = self.pb.getRepertoireOutputPath(lang, is_new)
suffix = '_old.txt'
if is_new:
suffix = '_new.txt'
output.writeToFile(rep_out_path + lang + suffix)
self.progress('Repertoire filtering based on operation')
print "Processing successful!!"
return ('Processing successful', True)
