Exemplos de Store.add em Python

Exemplo n.º 1

Arquivo: test_exporter_producers.py Projeto: dheeraj-thedev/chanjo

def test_fetch_records():
    # set up
    chanjo_db = Store(':memory:')
    chanjo_db.set_up()
    chanjo_db.add(
        chanjo_db.create('interval',
                         interval_id='interval1',
                         contig='chr1',
                         start=10,
                         end=100,
                         strand='+'))
    chanjo_db.save()

    columns = (Interval.contig, Interval.start, Interval.end)
    intervals = list(fetch_records(chanjo_db, columns))
    assert len(intervals) == 1
    assert intervals[0] == ('chr1', 10, 100)

Exemplo n.º 2

Arquivo: test_exporter_core.py Projeto: dheeraj-thedev/chanjo

def test_exporter_pipeline():
    # set up
    chanjo_db = Store(':memory:')
    chanjo_db.set_up()
    chanjo_db.add(
        chanjo_db.create('interval',
                         interval_id='intervalY',
                         contig='Y',
                         start=123,
                         end=501,
                         strand='-'))
    chanjo_db.save()

    bed_lines = list(export_intervals(chanjo_db))

    assert bed_lines[0] == '#chrom\tchromStart\tchromEnd\tname\tscore\tstrand'
    assert bed_lines[1:] == ['Y\t122\t501\tintervalY\t0\t-']

Exemplo n.º 3

Arquivo: test_exporter_core.py Projeto: dnil/chanjo

def test_exporter_pipeline():
  # set up
  chanjo_db = Store(':memory:')
  chanjo_db.set_up()
  chanjo_db.add(chanjo_db.create(
    'interval',
    interval_id='intervalY',
    contig='Y',
    start=123,
    end=501,
    strand='-'
  ))
  chanjo_db.save()

  bed_lines = list(export_intervals(chanjo_db))

  assert bed_lines[0] == '#chrom\tchromStart\tchromEnd\tname\tscore\tstrand'
  assert bed_lines[1:] == ['Y\t122\t501\tintervalY\t0\t-']

Exemplo n.º 4

Arquivo: test_exporter_producers.py Projeto: dnil/chanjo

def test_fetch_records():
  # set up
  chanjo_db = Store(':memory:')
  chanjo_db.set_up()
  chanjo_db.add(chanjo_db.create(
    'interval',
    interval_id='interval1',
    contig='chr1',
    start=10,
    end=100,
    strand='+'
  ))
  chanjo_db.save()

  columns = (Interval.contig, Interval.start, Interval.end)
  intervals = list(fetch_records(chanjo_db, columns))
  assert len(intervals) == 1
  assert intervals[0] == ('chr1', 10, 100)