class TestAR(ChannelTestBase):
channelname = 'AR'
params = run_single_channel(channelname, 1e-9, simtime)
vm = np.array(params['Vm'].vector)
gk = np.array(params['Gk'].vector)
tseries = np.arange(0, len(vm), 1.0) * simdt
def testAR_Vm_Neuron(self):
data = np.c_[self.tseries, self.vm]
try:
err = compare_channel_data(data,
self.channelname,
'Vm',
'neuron',
x_range=(simtime / 10.0, simtime))
self.assertLess(err, 0.01)
except IOError:
print('Could not find NRN data')
def testAR_Gk_Neuron(self):
data = np.c_[self.tseries, self.gk]
try:
err = compare_channel_data(data,
self.channelname,
'Gk',
'neuron',
x_range=(simtime / 10.0, simtime),
plot=True)
self.assertLess(err, 0.01)
except IOError:
print('Could not find NRN data')
class TestNaF_TCR(ChannelTestBase):
channelname = 'NaF_TCR'
params = run_single_channel(channelname, 1e-9, simtime)
vm = np.asarray(params['Vm'].vector)
gk = np.asarray(params['Gk'].vector)
tseries = np.array(range(0, len(params['Vm'].vector))) * simdt
def testNaF_TCR_Vm_Moose(self):
print 'Testing MOOSE Vm ...',
err = compare_channel_data(self.vm, TestNaF_TCR.channelname, 'Vm', 'moose', x_range=(simtime/10.0, simtime))
self.assertLess(err, 0.01)
print 'OK'
def testNaF_TCR_Gk_Moose(self):
print 'Testing MOOSE Gk ...',
err = compare_channel_data(self.gk, TestNaF_TCR.channelname, 'Gk', 'moose', x_range=(simtime/10.0, simtime))
self.assertLess(err, 0.05)
print 'OK'
def testNaF_TCR_Vm_Neuron(self):
print 'Testing NEURON Vm ...',
data = np.c_[self.tseries, self.vm]
err = compare_channel_data(data, self.channelname, 'Vm', 'neuron', x_range=(simtime/10.0, simtime))
self.assertLess(err, 0.01)
print 'OK'
def testNaF_TCR_Gk_Neuron(self):
print 'Testing NEURON Gk ...',
data = np.c_[self.tseries, self.gk]
err = compare_channel_data(data, self.channelname, 'Gk', 'neuron', x_range=(simtime/10.0, simtime), plot=True)
self.assertLess(err, 0.05)
print 'OK'
class TestKDR_FS(ChannelTestBase):
channelname = 'KDR_FS'
params = run_single_channel(channelname, 1e-9, simtime)
vm = np.array(params['Vm'].vector)
gk = np.array(params['Gk'].vector)
tseries = np.arange(0, len(vm), 1.0) * simdt
def testKDR_FS_Vm_Neuron(self):
data = np.c_[self.tseries, self.vm]
err = compare_channel_data(data,
self.channelname,
'Vm',
'neuron',
x_range=(simtime / 10.0, simtime))
self.assertLess(err, 0.01)
def testKDR_FS_Gk_Neuron(self):
data = np.c_[self.tseries, self.gk]
err = compare_channel_data(data,
self.channelname,
'Gk',
'neuron',
x_range=(simtime / 10.0, simtime),
plot=True)
self.assertLess(err, 0.01)
