def index():
"""[summary]
Returns:
[type] -- [description]
"""
if "jwt_token" in session and session["jwt_token"] is not None:
session["cidc_user_info"] = get_user_info(session["jwt_token"])
# This will be None if the user's token was invalid for any reason.
if session["cidc_user_info"] is not None:
# If the user is logged in, direct them to their roles homepage.
if session["cidc_user_info"]["role"] == CIMAC_BIOFX_ROLE:
return redirect(url_for_with_prefix("/cimac_biofx/home"))
elif session["cidc_user_info"]["role"] == REGISTRANT_ROLE:
# Check if user's registration is filled out.
if session["cidc_user_info"]["registered"]:
return redirect(url_for_with_prefix("/register"))
return redirect(url_for_with_prefix("/request_pending"))
elif session["cidc_user_info"]["role"] == ADMIN_ROLE:
return redirect(url_for_with_prefix("/trials-summary"))
# The user's JWT was invalid but they have a session, clear their session and start over again.
return redirect(url_for_with_prefix("/logout"))
return redirect(url_for_with_prefix("/login"))
def base_user_info(session):
if "jwt_token" in session:
session["cidc_user_info"] = get_user_info(session["jwt_token"])
if session["cidc_user_info"] is not None:
return dict(
user_role=session["cidc_user_info"]["role"],
user_name=session["cidc_user_info"]["username"],
clinical_trials_status_url=url_for_with_prefix(
"/trials-summary"),
cimac_biofx_home_url=url_for_with_prefix("/cimac_biofx/home"),
cli_install_url=url_for_with_prefix(
"/cimac_biofx/cli-install"),
olink_upload_url=url_for_with_prefix(
"/cimac_biofx/olink-upload"),
upload_status_url=url_for_with_prefix("/cimac_biofx/uploads"),
admin_home_url=url_for_with_prefix("/admin/home"),
browse_files_url=url_for_with_prefix("/browse-files"),
wes_pipelines_url=url_for_with_prefix("/wes-pipeline"),
wes_upload_instructions_url=url_for_with_prefix("/wes-upload"),
privacy_url=url_for_with_prefix("/privacy"),
logout_url=url_for_with_prefix("/logout"),
user_info_url=url_for_with_prefix("/admin/user_info"),
)
return dict()
def remove_upload():
session["cidc_user_info"] = get_user_info(session["jwt_token"])
data_id = request.form.get("data_id")
remove_data_record(session["jwt_token"], data_id)
return redirect(url_for_with_prefix("/cimac_biofx/uploads"))
def home():
session["cidc_user_info"] = get_user_info(session["jwt_token"])
user_home_data = get_cimac_biofox_user_home_data(session["jwt_token"])
return render_template("home.jinja2",
jwt=session["jwt_token"],
user_home_data=user_home_data)
def uploads():
session["cidc_user_info"] = get_user_info(session["jwt_token"])
olink_uploads = get_olink_status(session["jwt_token"])
return render_template("upload_status.jinja2",
jwt=session["jwt_token"],
olink_uploads=olink_uploads,
remove_uploaded_file_url=url_for_with_prefix(
"/cimac_biofx/remove-upload"))
def callback_controller():
"""[summary]
Returns:
[type] -- [description]
"""
session["jwt_token"], user_payload = callback_handling(auth0)
# After login, get user's info from Eve
session["cidc_user_info"] = get_user_info(session["jwt_token"])
session["user_name"] = user_payload["email"]
return redirect(url_for_with_prefix("/"))
def register():
"""[summary]
Returns:
[type] -- [description]
"""
session["cidc_user_info"] = get_user_info(session["jwt_token"])
if session["cidc_user_info"]["role"] is None:
return redirect(url_for_with_prefix("/logout"))
# If a user has already submitted a registration, bounce them to wait page.
if session["cidc_user_info"]["registered"]:
return redirect(url_for_with_prefix("/request_pending"))
register_form = RegistrationForm(request.form)
# Form submission method.
if request.method == "POST":
if register_form.validate():
update_user_info(session["jwt_token"], register_form)
send_mail(
"[CIDC][AUTOMATED] USER SIGNUP",
"A new user has signed up for the CIDC Portal (%s)" %
register_form.contact_email.data,
CIDC_MAILING_LIST,
)
return redirect(url_for_with_prefix("/request_pending"))
else:
render_template(
"register.jinja2",
save_url=url_for_with_prefix("/register"),
register_form=register_form,
)
return render_template(
"register.jinja2",
save_url=url_for_with_prefix("/register"),
register_form=register_form,
)
def request_pending():
"""[summary]
Returns:
[type] -- [description]
"""
session["cidc_user_info"] = get_user_info(session["jwt_token"])
if session["cidc_user_info"]["role"] is None:
return redirect(url_for_with_prefix("/logout"))
# If a previously registered/accepted user visits this page, redirect them to the index.
if session["cidc_user_info"]["role"] != REGISTRANT_ROLE:
return redirect(url_for_with_prefix("/"))
# If a user makes it here without filling out registration form, bounce them there.
if not session["cidc_user_info"]["registered"]:
return redirect(url_for_with_prefix("/register"))
return render_template("request-pending.jinja2")
def olink_upload():
session["cidc_user_info"] = get_user_info(session["jwt_token"])
return render_template("olink-upload.jinja2", jwt=session["jwt_token"])
def cli_install():
session["cidc_user_info"] = get_user_info(session["jwt_token"])
return render_template("cli-install.jinja2", jwt=session["jwt_token"])
def wes_upload_instructions():
session["cidc_user_info"] = get_user_info(session["jwt_token"])
return render_template('react.jinja2')
def wes_pipeline():
session["cidc_user_info"] = get_user_info(session["jwt_token"])
return render_template('react.jinja2')
def browse_files():
session["cidc_user_info"] = get_user_info(session["jwt_token"])
return render_template('react.jinja2')