def getColumn(self, columnIndex):
"""Get a column (trivial!)
Return None on error
"""
if columnIndex < 0 or columnIndex > self.colSize:
return None
result = NTlist()
for row in self:
result.append(row[columnIndex])
return result
def getDiagonal(self):
"""
Get the diagonal of a square NTlistOfLists
return NTlist instance or None on error
"""
if self.rowSize != self.colSize:
nTerror(
'NTlistOflists.getDiagonal: unequal number of rows (%d) and collumns (%d)',
self.rowSize, self.colSize)
return None
result = NTlist()
for i in range(self.rowSize):
result.append(self[i][i])
#end for
return result
def to3StateDssp(strNTList):
"""Personal communications JFD with Rob Hooft and Gert Vriend.
3, H -> H
B, E -> S
space, S, G, T -> coil (represented by ' ')
See namesake method in procheck class.
"""
result = NTlist()
for c in strNTList:
n = DSSP_C
if c == '3' or c == 'H':
n = DSSP_H
# end if
elif c == 'B' or c == 'E':
n = DSSP_S
# end if
result.append(n)
return result
def __init__(self):
NTdict.__init__(self)
self[ERROR_ID] = NTlist()
self[WARNING_ID] = NTlist()
self[MESSAGE_ID] = NTlist()
self[DEBUG_ID] = NTlist()