Exemplo n.º 1
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    def test_collocated_NetCDF_Gridded_onto_GASSP(self):
        # First do a collocation of ECHAMHAM onto GASSP
        vars = valid_echamham_variable_1, valid_echamham_variable_2
        filename = escape_colons(valid_echamham_filename)
        sample_file = escape_colons(valid_GASSP_aeroplane_filename)
        sample_var = valid_GASSP_aeroplane_variable
        collocator_and_opts = 'nn[missing_data_for_missing_sample=True],variable=%s' % sample_var
        arguments = [
            'col', ",".join(vars) + ':' + filename,
            sample_file + ':collocator=' + collocator_and_opts, '-o',
            'collocated_gassp'
        ]
        main_arguments = parse_args(arguments)
        col_cmd(main_arguments)

        # Check collocation is the same
        self.ds = netCDF4.Dataset('collocated_gassp.nc')
        col_var1 = self.ds.variables[valid_echamham_variable_1][:]
        col_var2 = self.ds.variables[valid_echamham_variable_2][:]
        # A hand calculated selection of values
        expected_col1 = numpy.ma.masked_invalid([
            float('Nan'),
            float('Nan'),
            float('Nan'), 0.0814601778984, 0.0814601778984
        ])
        compare_masked_arrays(expected_col1, col_var1[:][0:5])
        expected_col2 = numpy.ma.masked_invalid([
            float('Nan'),
            float('Nan'),
            float('Nan'), 0.0741240680218, 0.0741240680218
        ])
        compare_masked_arrays(expected_col2, col_var2[:][0:5])

        # Then do an evaluation using the collocated data:
        args = [
            'eval',
            "%s,%s:%s" % (valid_echamham_variable_1, valid_echamham_variable_2,
                          'collocated_gassp.nc'),
            "%s=gassp_alias:%s" %
            (valid_GASSP_aeroplane_variable,
             escape_colons(valid_GASSP_aeroplane_filename)),
            "(%s + %s) / gassp_alias " %
            (valid_echamham_variable_1, valid_echamham_variable_2), '1', '-o',
            self.OUTPUT_FILENAME
        ]
        arguments = parse_args(args)
        evaluate_cmd(arguments)
        self.ds.close()

        # Check correct
        self.ds = netCDF4.Dataset(self.OUTPUT_FILENAME)
        calculated_result = self.ds.variables['calculated_variable'][:]
        # A hand calculated selection of values
        expected_result = numpy.ma.masked_invalid(
            [0.00196121983491, 0.00197255626472, 0.00120850731992])

        assert_that(calculated_result.shape, is_((311, )))
        # Check the first 3 vald values
        compare_masked_arrays(expected_result, calculated_result[:][10:13])
        os.remove('collocated_gassp.nc')
Exemplo n.º 2
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    def test_collocated_NetCDF_Gridded_onto_GASSP(self):
        # Takes 2s
        # First do a collocation of ECHAMHAM onto GASSP
        sample_file = valid_GASSP_aeroplane_filename
        sample_var = valid_GASSP_aeroplane_variable
        collocator_and_opts = 'nn,variable=%s' % sample_var
        arguments = [
            'col',
            '%s:%s' % (valid_echamham_variable_1,
                       escape_colons(valid_echamham_filename)),
            escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
            '-o', 'collocated_gassp'
        ]
        main_arguments = parse_args(arguments)
        col_cmd(main_arguments)

        # Then do a statistics calculation using the collocated data:
        args = [
            'stats',
            "%s:%s" % (valid_echamham_variable_1, 'collocated_gassp.nc'),
            "%s:%s" % (valid_GASSP_aeroplane_variable,
                       escape_colons(valid_GASSP_aeroplane_filename)), '-o',
            self.OUTPUT_FILENAME
        ]
        arguments = parse_args(args)
        stats_cmd(arguments)
        self.check_output_contains_variables(self.OUTPUT_FILENAME,
                                             self.output_vars)
        os.remove('collocated_gassp.nc')
Exemplo n.º 3
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 def test_GASSP_onto_CALIOP_L2(self):
     variable = valid_GASSP_aeroplane_variable
     filename = valid_GASSP_aeroplane_filename
     sample_file = valid_caliop_l2_filename
     collocator_and_opts = 'box[h_sep=10km],kernel=mean'
     arguments = ['col', variable + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
Exemplo n.º 4
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 def test_GASSP_onto_CALIOP_L1(self):
     # Ran for 14hr, not finished. (with no h_sep)
     variable = valid_GASSP_aeroplane_variable
     filename = valid_GASSP_aeroplane_filename
     sample_file = valid_caliop_l1_filename
     collocator_and_opts = 'box[h_sep=10km],kernel=mean'
     arguments = ['col', variable + ':' + filename,
                  sample_file + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
Exemplo n.º 5
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 def test_GIVEN_single_variable_WHEN_collocate_THEN_successful_collocation(self):
     variable = cis_test_files["NCAR_NetCDF_RAF"].data_variable_name
     filename = cis_test_files["NCAR_NetCDF_RAF"].master_filename
     sample_file = valid_hadgem_filename
     collocator_and_opts = 'bin,kernel=mean'
     arguments = ['col', variable + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, ['ATX'])
Exemplo n.º 6
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 def test_GIVEN_multiple_variables_on_same_coords_plus_dim_vars_WHEN_collocate_THEN_successful_collocation(self):
     variables = valid_aerosol_cci_variable, valid_aerosol_cci_variable_2, 'time'
     filename = valid_aerosol_cci_filename
     sample_file = valid_echamham_filename
     collocator_and_opts = 'bin,kernel=mean'
     arguments = ['col', ','.join(variables) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, variables)
Exemplo n.º 7
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 def test_GASSP_onto_Aeronet(self):
     # Takes 73s
     variable = valid_GASSP_aeroplane_variable
     filename = valid_GASSP_aeroplane_filename
     sample_file = valid_aeronet_filename
     collocator_and_opts = 'box[h_sep=10km],kernel=mean'
     arguments = ['col', variable + ':' + filename,
                  sample_file + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, variable.split(","))
Exemplo n.º 8
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 def test_GIVEN_single_variable_WHEN_collocate_box_THEN_successful_collocation(self):
     # Takes 13 s
     variable = cis_test_files["NCAR_NetCDF_RAF"].data_variable_name
     filename = cis_test_files["NCAR_NetCDF_RAF"].master_filename
     sample_file = valid_echamham_filename
     collocator_and_opts = 'box[h_sep=10],kernel=mean'
     arguments = ['col', variable + ':' + filename,
                  sample_file + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, ['ATX'])
Exemplo n.º 9
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 def test_GASSP_onto_GASSP(self):
     # Takes 6.5mins
     vars = valid_GASSP_station_vars[:2]
     filename = valid_GASSP_station_filename
     sample_file = valid_GASSP_aeroplane_filename
     collocator_and_opts = 'box[h_sep=10km],kernel=mean'
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
Exemplo n.º 10
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 def test_Aeronet_onto_CloudSat(self):
     # Takes 5hrs
     variable = "AOT_440,AOT_870"
     filename = valid_aeronet_filename
     sample_file = valid_cloudsat_PRECIP_file
     collocator_and_opts = 'box[h_sep=700km],kernel=mean'
     arguments = ['col', variable + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, variable.split(","))
Exemplo n.º 11
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 def test_GASSP_aux_coord_onto_Aeronet(self):
     # Takes 73s
     filename = cis_test_files['GASSP_aux_coord'].master_filename
     variable = cis_test_files['GASSP_aux_coord'].data_variable_name
     sample_file = valid_aeronet_filename
     collocator_and_opts = 'box[h_sep=10km],kernel=mean'
     arguments = ['col', variable + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, variable.split(","))
Exemplo n.º 12
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 def test_CALIOP_L1_onto_NetCDF_Gridded(self):
     vars = [valid_caliop_l1_variable]
     filename = valid_caliop_l1_filename
     sample_file = valid_hadgem_filename
     sample_var = valid_hadgem_variable
     collocator_and_opts = 'bin,kernel=mean,variable=%s' % sample_var
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 13
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 def test_Aeronet_onto_GASSP(self):
     # Takes 81 s
     # Two vars takes 160s - shouldn't?
     variable = "AOT_440,AOT_870"
     filename = valid_aeronet_filename
     sample_file = valid_GASSP_aeroplane_filename
     collocator_and_opts = 'box[h_sep=10m],kernel=mean'
     arguments = ['col', variable + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, variable.split(","))
Exemplo n.º 14
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 def test_GASSP_aux_onto_NetCDF_Gridded(self):
     filename = cis_test_files['GASSP_aux_coord'].master_filename
     var = cis_test_files['GASSP_aux_coord'].data_variable_name
     sample_file = valid_echamham_filename
     sample_var = valid_echamham_variable_1
     collocator_and_opts = 'bin,kernel=mean'
     arguments = ['col', var + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, [var])
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, [var])
Exemplo n.º 15
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 def test_NetCDF_Gridded_onto_CALIOP_L2(self):
     vars = valid_echamham_variable_1, valid_echamham_variable_2
     filename = valid_echamham_filename
     sample_file = valid_caliop_l2_filename
     sample_var = valid_caliop_l2_variable
     collocator_and_opts = 'nn,variable=%s' % sample_var
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 16
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 def test_hybrid_pressure_onto_GASSP_li(self):
     # Takes 1s
     vars = [valid_hybrid_pressure_variable]
     filename = valid_hybrid_pressure_filename
     sample_file = valid_GASSP_aircraft_files_with_different_timestamps[0]
     sample_var = valid_GASSP_aircraft_var_with_different_timestamps
     collocator_and_opts = 'lin,variable=%s' % sample_var
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, ['mmrbc'])
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, ['mmrbc'])
Exemplo n.º 17
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 def test_hybrid_height_onto_GASSP_li(self):
     # Takes 1s
     vars = [valid_hybrid_height_flat_variable]
     filename = valid_hybrid_height_flat_filename
     sample_file = valid_GASSP_aeroplane_filename
     sample_var = valid_GASSP_aeroplane_variable
     collocator_and_opts = 'lin,variable=%s' % sample_var
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 18
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 def test_HadGem_onto_cis_gridded_output_lin(self):
     # Takes 1s
     vars = [valid_hadgem_variable]
     filename = valid_hadgem_filename
     sample_file = valid_cis_gridded_output_filename
     sample_var = valid_cis_gridded_output_variable
     collocator_and_opts = 'lin,variable=%s' % sample_var
     arguments = ['col', ",".join(vars) + ':' + filename,
                  sample_file + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 19
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 def test_NetCDF_Gridded_onto_ASCII_no_variable(self):
     # Takes 4s
     vars = valid_echamham_variable_1, valid_echamham_variable_2
     filename = valid_echamham_filename
     sample_file = cis_test_files["ascii"].master_filename
     sample_var = cis_test_files["ascii"].data_variable_name
     collocator_and_opts = 'nn'
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 20
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 def test_ASCII_onto_NetCDF_Gridded(self):
     # Takes 5s
     vars = ["values"]
     filename = valid_ascii_filename
     sample_file = valid_hadgem_filename
     sample_var = valid_hadgem_variable
     collocator_and_opts = 'bin,kernel=mean'
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, ["value"])
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, ["value"])
Exemplo n.º 21
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 def test_cloudsat_RVOD_onto_NetCDF_Gridded(self):
     # Takes 290s
     vars = [valid_cloudsat_RVOD_sdata_variable, valid_cloudsat_RVOD_vdata_variable]
     filename = valid_cloudsat_RVOD_file
     sample_file = valid_hadgem_filename
     sample_var = valid_hadgem_variable
     collocator_and_opts = 'bin,kernel=mean'
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 22
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 def test_GASSP_onto_Aeronet_using_moments_kernel(self):
     # Takes 73s
     variable = valid_GASSP_aeroplane_variable
     filename = valid_GASSP_aeroplane_filename
     sample_file = valid_aeronet_filename
     collocator_and_opts = 'box[h_sep=10km],kernel=moments'
     arguments = ['col', variable + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     out_vars = [variable, variable + '_std_dev', variable + '_num_points']
     self.check_output_contains_variables(self.OUTPUT_FILENAME, out_vars)
     self.check_output_col_grid(sample_file, valid_aeronet_variable, self.OUTPUT_FILENAME, out_vars)
Exemplo n.º 23
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 def test_GASSP_plane_onto_NetCDF_Gridded(self):
     # Takes 15s
     vars = valid_GASSP_aeroplane_vars
     filename = valid_GASSP_aeroplane_filename
     sample_file = valid_echamham_filename
     sample_var = valid_echamham_variable_1
     collocator_and_opts = 'bin,kernel=mean,variable=%s' % sample_var
     arguments = ['col', ",".join(vars) + ':' + filename,
                  sample_file + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 24
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 def test_MODIS_L3_onto_NetCDF_Gridded(self):
     # Takes 27s
     vars = [valid_modis_l3_variable]
     filename = valid_modis_l3_filename
     sample_file = valid_hadgem_filename
     sample_var = valid_hadgem_variable
     collocator_and_opts = 'bin,kernel=mean,variable=%s' % sample_var
     arguments = ['col', ",".join(vars) + ':' + filename,
                  sample_file + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 25
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 def test_hybrid_pressure_onto_GASSP_nn(self):
     # Takes 1s
     vars = [valid_hybrid_pressure_variable]
     filename = valid_hybrid_pressure_filename
     sample_file = valid_GASSP_aeroplane_filename
     sample_var = valid_GASSP_aeroplane_variable
     collocator_and_opts = 'nn,variable=%s' % sample_var
     arguments = ['col', ",".join(vars) + ':' + filename,
                  sample_file + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, ['mmrbc'])
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, ['mmrbc'])
Exemplo n.º 26
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 def test_MODIS_L2_onto_NetCDF_Gridded(self):
     # Takes 20s
     vars = ['Solar_Zenith', 'Optical_Depth_Ratio_Small_Land_And_Ocean']
     filename = valid_modis_l2_filename
     sample_file = valid_hadgem_filename
     sample_var = valid_hadgem_variable
     collocator_and_opts = 'bin,kernel=mean,variable=%s' % sample_var
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 27
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 def test_NetCDF_Gridded_onto_MODIS_L3(self):
     # Takes 47s
     vars = valid_hadgem_variable,
     filename = valid_hadgem_filename
     sample_file = valid_modis_l3_filename
     sample_var = valid_modis_l3_variable
     collocator_and_opts = 'nn,variable=%s' % sample_var
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 28
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 def test_NetCDF_Gridded_onto_cis_output_data(self):
     # Takes 3s
     vars = valid_echamham_variable_1, valid_echamham_variable_2
     filename = valid_echamham_filename
     sample_file = valid_cis_ungridded_output_filename
     sample_var = valid_cis_ungridded_output_variable
     collocator_and_opts = 'nn,variable=%s' % sample_var
     arguments = ['col', ",".join(vars) + ':' + filename,
                  sample_file + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 29
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 def test_NetCDF_Gridded_onto_NCAR_RAF(self):
     # Takes 30s
     vars = valid_echamham_variable_1, valid_echamham_variable_2
     filename = valid_echamham_filename
     sample_file = valid_NCAR_NetCDF_RAF_filename
     sample_var = valid_NCAR_NetCDF_RAF_variable
     collocator_and_opts = 'nn'
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 30
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 def test_GASSP_ship_onto_NetCDF_Gridded(self):
     # Takes 10mins
     vars = valid_GASSP_ship_vars
     filename = valid_GASSP_ship_filename
     sample_file = valid_echamham_filename
     sample_var = valid_echamham_variable_1
     collocator_and_opts = 'bin,kernel=mean'
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 31
0
 def test_Aeronet_onto_NetCDF_Gridded(self):
     # JASCIS-120
     # Takes 6s
     vars = ["AOT_440", "AOT_870"]
     filename = valid_aeronet_filename
     sample_file = valid_echamham_filename
     sample_var = valid_echamham_variable_1
     collocator_and_opts = 'bin,kernel=mean'
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
Exemplo n.º 32
0
 def test_NetCDF_Gridded_onto_GASSP_aux_coord_li(self):
     # Takes 1s
     vars = valid_echamham_variable_1, valid_echamham_variable_2
     filename = valid_echamham_filename
     sample_file = cis_test_files['GASSP_aux_coord'].master_filename
     sample_var = cis_test_files['GASSP_aux_coord'].data_variable_name
     collocator_and_opts = 'lin,variable=%s' % sample_var
     arguments = ['col', ",".join(vars) + ':' + escape_colons(filename),
                  escape_colons(sample_file) + ':collocator=' + collocator_and_opts,
                  '-o', self.OUTPUT_FILENAME]
     main_arguments = parse_args(arguments)
     col_cmd(main_arguments)
     self.check_output_contains_variables(self.OUTPUT_FILENAME, vars)
     self.check_output_col_grid(sample_file, sample_var, self.OUTPUT_FILENAME, vars)
     self.check_output_vars_are_different(self.OUTPUT_FILENAME, vars)