def main(ctx, input_path):
# dump the CWL and params (if requested)
dump(ctx)
if 'TMPDIR' in os.environ:
os.chdir(os.environ['TMPDIR'])
logging.info(os.path.join(input_path, 'catalog.json'))
item = get_item(os.path.join(input_path, 'catalog.json'))
output_dir = f'{item.id}'
calibrator = Calibrator()
item_out = calibrator.calibrate(item)
logging.info('STAC')
cat = Catalog(id='catalog',
description="Calibrated sar product")
cat.add_items([item_out])
cat.normalize_and_save(root_href='./',
catalog_type=CatalogType.SELF_CONTAINED)
logging.info('Done!')
#os.mkdir(output_dir)
sys.exit(0)
def main(ctx, ndvi_threshold, ndwi_threshold, pre_event, post_event):
dump(ctx)
os.environ["PREFIX"] = "/opt/anaconda/envs/env_burned_area"
os.environ["PROJ_LIB"] = os.path.join(os.environ["PREFIX"], "share/proj")
os.environ["GDAL_DATA"] = os.path.join(os.environ["PREFIX"], "share/gdal")
burned_area_item = burned(
pre_item=get_item(os.path.join(pre_event, "catalog.json")),
post_item=get_item(os.path.join(post_event, "catalog.json")),
ndvi_threshold=ndvi_threshold,
ndwi_threshold=ndwi_threshold,
)
logging.info("Output catalog")
catalog = Catalog(id="catalog", description="Results")
catalog.clear_items()
catalog.clear_children()
catalog.add_items([burned_area_item])
catalog.describe()
catalog.normalize_and_save(root_href="./",
catalog_type=CatalogType.SELF_CONTAINED)
def main(ctx, **kwargs):
dump(ctx)
print("business as usual")
print(kwargs)
sys.exit(0)
def main(ctx, input_reference, s_expression, cbn):
dump(ctx)
item = get_item(os.path.join(input_reference, "catalog.json"))
logging.info(f"Processing {item.id}")
try:
os.mkdir(item.id)
except FileExistsError:
pass
cbn = cbn.replace(' ', '-')
result = os.path.join(item.id, f"{cbn}.tif")
logging.info(f"Apply {s_expression} to {item.id}")
apply_s_expression(item=item, s_expression=s_expression, out_tif=result)
logging.info("STAC")
item_out = Item(
id=item.id,
geometry=item.geometry,
bbox=item.bbox,
datetime=item.datetime,
properties=item.properties,
stac_extensions=item.stac_extensions,
)
eo_item = extensions.eo.EOItemExt(item_out)
asset_properties = dict()
asset_properties["s-expression"] = s_expression
asset = Asset(
href=os.path.basename(result),
media_type=MediaType.COG,
roles=["data"],
properties=asset_properties,
)
eo_bands = [
extensions.eo.Band.create(
name=cbn.lower(),
common_name=cbn.lower(),
description=f"{cbn.lower()} ({s_expression})",
)
]
eo_item.set_bands(eo_bands, asset=asset)
item_out.add_asset(key=cbn.lower(), asset=asset)
logging.info("STAC")
cat = Catalog(id="catalog", description="s-expression")
cat.add_items([item_out])
cat.normalize_and_save(root_href="./",
catalog_type=CatalogType.SELF_CONTAINED)
logging.info("Done!")
def main(ctx, input_reference, aoi):
dump(ctx)
logging.info("Hello World!")