for project in ['CMIP6', 'CMIP6_extent']:
## --> systematic arguments = simulation, frequency, variable
## -- Set the aliases for the frequency
## -- Set default values
cdef('root' , root , project=project)
cdef('institute' , '*' , project=project)
cdef('model' , '*' , project=project)
cdef('mip' , '*' , project=project)
#cdef('table' , '*' , project='CMIP6') # impossible, because of ambiguities
cdef('grid' , 'g*' , project=project)
cdef('realization' , 'r1i1p1f*' , project=project)
cdef('experiment' , 'historical' , project=project)
cdef('version' , 'latest' , project=project)
cdef('table' , '*' , project=project)
#
calias(project, 'tos', offset=273.15)
calias(project, 'thetao', offset=273.15)
calias(project, 'sivolu', 'sivol')
calias(project, 'sic', 'siconc')
calias(project, 'sit', 'sithick')
calias(project, 'NO3', 'no3')
calias(project, 'PO4', 'po4')
calias(project, 'Si', 'si')
calias(project, 'O2', 'o2')
cdef('extent_experiment', 'ssp585' , project='CMIP6_extent')
# -------------
## -- Define the patterns
base_pattern1="${root}/CMIP6/${mip}/${institute}/${model}/${experiment}/${realization}/${table}/"
cdef('experiment', 'historical', project='CORDEX_extent')
cdef('model_version', '*', project='CORDEX_extent')
# -- CORDEX Adjust
pattern = '${root}/CORDEX-Adjust/bias-adjusted-output/${CORDEX_domain}/${institute}/${driving_model}/' \
'${experiment}/${realization}/${model}/${bias_correction}/${frequency}/${variable}/${version}/' \
'${variable}_${CORDEX_domain}_${driving_model}_${experiment}_${realization}_${model}_' \
'${bias_correction}_${frequency}_${PERIOD}.nc'
cproject('CORDEX-Adjust', 'root', 'model', 'CORDEX_domain', 'bias_correction', 'frequency', 'driving_model',
'realization', 'experiment', 'version', 'institute', ensemble=['model', 'driving_model', 'realization'],
separator='%')
dataloc(project='CORDEX-Adjust', url=pattern)
cdef('bias_correction', '*', project='CORDEX-Adjust')
cdef('experiment', 'rcp85', project='CORDEX-Adjust')
for project in ['CORDEX', 'CORDEX_extent', 'CORDEX-Adjust']:
cfreqs(project, {'daily': 'day'})
cdef('version', 'latest', project=project)
cdef('root', root, project=project)
cdef('institute', '*', project=project)
cdef('realization', 'r1i1p1', project=project)
cdef('frequency', '*', project=project)
cdef('driving_model', '*', project=project)
cdef('CORDEX_domain', '*', project=project)
cdef('model', '*', project=project)
# -- Overwrite root only for CORDEX-Adjust
cdef('root', '/prodigfs/project', project='CORDEX-Adjust')
for var in ['tas', 'tasmax', 'tasmin', 'pr', 'rsds', 'sfcWind']:
calias('CORDEX-Adjust', var, var + 'Adjust')
>>> cdef('project','gpcc')
>>> d=ds(variable='pr',period='198001',grid='05d')
>>> d2=ds(variable='pr',period='198001',grid='1d')
>>> d3=ds(variable='pr',period='198001',grid='T127')
"""
from climaf.dataloc import dataloc
from climaf.classes import cproject, calias
from climaf.site_settings import atCNRM
if atCNRM:
cproject('gpcc', 'grid') # grid writes as '05d', '1d' or 'T127'
url_gpcc = "/cnrm/amacs/DATA/OBS/netcdf/monthly_mean/gpcc/GPCC.Reanalysis.${grid}.nc"
dataloc(project='gpcc', organization='generic', url=[url_gpcc])
# Defining alias and derived variables for GPCC, together with filenames
##############################################################################
calias("gpcc",
'pr',
'GPCC',
scale=1. / 86400.,
missing=1.e+20,
units="kg m-2 s-1")
#calias("gpcc",'GPCC' ,'GPCC' , ,units="mm/day")
#NSTA:="Number of stations available for a specific analysis grid in a specific month"
#calias("gpcc",'site' ,'NSTA' )
cdef('variable', 'tas', project='CMIP6CERFACS')
cdef('table', 'Amon', project='CMIP6CERFACS')
cdef('realization', 'r*i1p1f*', project='CMIP6CERFACS')
cdef('grid', 'g*', project='CMIP6CERFACS')
# -- Specify the pattern
root1 = "/data/scratch/globc/dcom/CMIP6/${mip}/${institute}/${model}/${model}_${simulation}_${realization}/"
pathfiles1 = root1 + "${variable}_${table}_${model}_${simulation}_${realization}_${grid}_${PERIOD}.nc"
root2 = "/data/scratch/globc/dcom/PRIMAVERA/WP6_HIGHRESMIP/${model}_${simulation}_${realization}/"
pathfiles2 = root2 + "${variable}_${table}_${model}_${simulation}_${realization}_${grid}_${PERIOD}.nc"
root3 = "/data/scratch/globc/vrousseau/MODELE/${model}_${simulation}_${realization}/"
pathfiles3 = root3 + "${variable}_${table}_${model}_${simulation}_${realization}_${grid}_${PERIOD}.nc"
# -- call the dataloc CliMAF function
dataloc(project='CMIP6CERFACS', organization='generic', url=[pathfiles1])
dataloc(project='CMIP6CERFACS', organization='generic', url=[pathfiles2])
dataloc(project='CMIP6CERFACS', organization='generic', url=[pathfiles3])
# -- Define alias if necessary
calias("CMIP6CERFACS", "msftmyz", scale=1.e-3)
calias("CMIP6CERFACS", "tos", offset=273.15)
calias("CMIP6CERFACS", "thetao", offset=273.15)
calias("CMIP6CERFACS", "thetaoga", offset=273.15)
calias("CMIP6CERFACS", 'sic', 'siconc', filenameVar='siconc')
calias("CMIP6CERFACS", 'sit', 'sithick', filenameVar='sithick')
calias("CMIP6CERFACS", 'sivolu', 'sivol', filenameVar='sivol')
# Obs de MOC RAPID (Il a fallu bricoler les donnees d'origine pour la dimension time au debut et unlim)
# dataloc(project="ref_climatos",organization="generic",
# url='/home/esanchez/data_climaf/${variable}_vertical_unlim.nc')
calias(project='ref_climatos', variable='moc', fileVariable='stream_function_mar', filenameVar='moc')
Example of an 'gpcp' project dataset declaration ::
>>> cdef('project','gpcp')
>>> d=ds(variable='pr',period='198001',grid='2.5d', frequency='monthly')
>>> d2=ds(variable='pr',period='198001',grid='1d',frequency='daily')
"""
from climaf.dataloc import dataloc
from climaf.classes import cproject, calias
from climaf.site_settings import atCNRM
if atCNRM:
cproject('gpcp','grid', ('frequency','monthly'), separator="_") # grid writes as '1d', '2.5d', 'T42' or 'T127'
root="/cnrm/vdr/DATA/OBS/netcdf/${frequency}"
patmonth=root+"_mean/gpcp/${variable}_gpcp.${grid}.nc"
patday =root+"/gpcp/${variable}_gpcp.${grid}.nc"
dataloc(project='gpcp', organization='generic', url=[patmonth,patday])
# Defining alias and derived variables for GPCP, together with filenames
##############################################################################
# Original data is mm/day
calias("gpcp",'precip' ,'precip', filenameVar='pr')
# Compute in SI
calias("gpcp",'pr' ,'precip', scale=1./86400.,units="kg m-2 s-1", filenameVar='pr')
Example of an 'gpcc' project dataset declaration ::
>>> cdef('project','gpcc')
>>> d=ds(variable='pr',period='198001',grid='05d')
>>> d2=ds(variable='pr',period='198001',grid='1d')
>>> d3=ds(variable='pr',period='198001',grid='T127')
"""
from climaf.dataloc import dataloc
from climaf.classes import cproject, calias
from climaf.site_settings import atCNRM
if atCNRM:
cproject('gpcc','grid') # grid writes as '05d', '1d' or 'T127'
url_gpcc="/cnrm/vdr/DATA/OBS/netcdf/monthly_mean/gpcc/GPCC.Reanalysis.${grid}.nc"
dataloc(project='gpcc', organization='generic', url=[url_gpcc])
# Defining alias and derived variables for GPCC, together with filenames
##############################################################################
calias("gpcc",'pr' ,'GPCC' ,scale=1./86400. ,missing=1.e+20, units="kg m-2 s-1")
#calias("gpcc",'GPCC' ,'GPCC' , ,units="mm/day")
#NSTA:="Number of stations available for a specific analysis grid in a specific month"
#calias("gpcc",'site' ,'NSTA' )
# Frequency alias
cfreqs('IGCM_OUT', {'monthly':'1M' , 'daily':'1D' , 'seasonal':'SE', 'annual_cycle':'SE'})
urls_IGCM_OUT=[
"/${root}/${login}/IGCM_OUT/${model}/*/${experiment}/${simulation}/${DIR}/${OUT}/*/${simulation}_YYYYMMDD_YYYYMMDD_${frequency}_${variable}.nc",
"/${root}/${login}/IGCM_OUT/${model}/*/${experiment}/${simulation}/${DIR}/${OUT}/${frequency}/${simulation}_${frequency}_${clim_period}_1M_${variable}.nc"
]
# Next command will lead to explore all directories in 'urls_IGCM_OUT'
# for searching data for a CliMAF dataset (by function ds) except if
# a more specific dataloc entry matches the arguments to 'ds'
dataloc(project="IGCM_OUT", organization="generic", url=urls_IGCM_OUT)
# OCE
calias("IGCM_OUT", 'tos' ,'tos' ,filenameVar='grid_T')
calias("IGCM_OUT", 'sos' ,'sos' ,filenameVar='grid_T')
calias("IGCM_OUT", 'to' ,'thetao' ,filenameVar='grid_T')
calias("IGCM_OUT", 'so' ,'so' ,filenameVar='grid_T')
calias("IGCM_OUT", 'zos' ,'zos' ,filenameVar='grid_T')
calias("IGCM_OUT", 'mlotst' ,'mldr10_1' ,filenameVar='grid_T')
# ICE
calias("IGCM_OUT", 'sic', 'siconc', scale=100 ,filenameVar="ICE")
# ATM
calias("IGCM_OUT", 'pr' ,'precip' ,filenameVar='histmth')
calias("IGCM_OUT", 'psl' ,'slp' ,filenameVar='histmth')
calias("IGCM_OUT", 'tas' ,'tas' ,filenameVar='histmth')
calias("IGCM_OUT", 'tas' ,'t2m' ,filenameVar='histmth')
calias("IGCM_OUT", 'uas' ,'uas' ,filenameVar='histmth')
# Next command will lead to explore all directories in 'urls_IGCM_OUT'
# for searching data for a CliMAF dataset (by function ds) except if
# a more specific dataloc entry matches the arguments to 'ds'
dataloc(project="IGCM_OUT", organization="generic", url=urls_IGCM_OUT)
# -- Note:
# -- In the project IGCM_OUT, we have defined aliases for both the CMIP variable names (aliased to the old igcm
# names when necessary)
# -- and the old IGCM names to take advantage of the mechanisms behind calias (scale, offset, filenameVar)
# ---------------------------------------- #
# -- Aliases to the CMIP variable names -- #
# OCE
calias("IGCM_OUT", 'tos', offset=273.15, filenameVar='grid_T')
calias("IGCM_OUT", 'sos', filenameVar='grid_T')
calias("IGCM_OUT", 'thetao', offset=273.15, filenameVar='grid_T')
calias("IGCM_OUT", 'so', filenameVar='grid_T')
calias("IGCM_OUT", 'zos', filenameVar='grid_T')
calias("IGCM_OUT", 'mlotst', 'mldr10_1', filenameVar='grid_T')
calias("IGCM_OUT", 'mlddt02', 'mld_dt02', filenameVar='grid_T')
calias("IGCM_OUT", 'hc300', scale=1.E-9, filenameVar='grid_T')
calias("IGCM_OUT", 'wfo', filenameVar='grid_T')
# ICE
calias("IGCM_OUT", 'sic', 'siconc', scale=100, filenameVar="icemod")
calias("IGCM_OUT", 'sit', 'sithic', filenameVar="icemod")
calias("IGCM_OUT", 'sivolu', filenameVar="icemod")
# ATM general variables
cproject('erai',('grid','_'), ('frequency','monthly')) # no grid writes as '_' , otherwise as e.g. 'T42' or 'T127'
root="/cnrm/vdr/DATA/OBS/netcdf/${frequency}"
patmonth1=root+"_mean/erai/erai_???_mm_${variable}${grid}YYYY-YYYY.nc" #for original grid
patmonth2=root+"_mean/erai/erai_???_mm_${variable}.${grid}.YYYY-YYYY.nc" #for other grids e.g. : grid ='T42' or 'T127'
patday1=root+"/erai/ei_${variable}${grid}YYYY-YYYY.nc" #for original grid
patday2=root+"/erai/ei_${variable}_${grid}_YYYY-YYYY.nc" #for other grids e.g.: grid ='T42' or 'T127'
dataloc(project='erai', organization='generic', url=[patmonth1,patmonth2,patday1,patday2])
# Defining alias and derived variables for ERAI, together with filenames
##############################################################################
# Valid both for daily and monthly data (to check : energy flux in W for
# daily and Joules for monthly ????)
calias("erai",'sic' ,'ci' ,filenameVar='CI')
calias("erai",'tos' ,'sst' ,filenameVar='SSTK')
calias("erai",'z' ,'z' ,filenameVar='Z')
calias("erai",'ta' ,'t' ,filenameVar='T')
calias("erai",'ua' ,'u' ,filenameVar='U')
calias("erai",'va' ,'v' ,filenameVar='V')
calias("erai",'hus' ,'q' ,filenameVar='Q')
calias("erai",'prw' ,'tcw' ,filenameVar='TCW')
calias("erai",'prc' ,'cp' ,filenameVar='CP')
calias("erai",'prl' ,'lsp' ,filenameVar='LSP')
calias("erai",'prsn' ,'sf' ,filenameVar='SF')
calias("erai",'hfss' ,'sshf',filenameVar='SSHF')
calias("erai",'hfls' ,'slhf',filenameVar='SLHF')
calias("erai",'ps' ,'msl' ,filenameVar='MSL')
calias("erai",'clt' ,'tcc' ,filenameVar='TCC')
calias("erai",'uas' ,'u10' ,filenameVar='10U')
>>> d=ds(variable='pr',period='198001',grid='2.5d', frequency='monthly')
>>> d2=ds(variable='pr',period='198001',grid='1d',frequency='daily')
"""
from climaf.dataloc import dataloc
from climaf.classes import cproject, calias
from climaf.site_settings import atCNRM
if atCNRM:
cproject('gpcp', 'grid', ('frequency', 'monthly'),
separator="_") # grid writes as '1d', '2.5d', 'T42' or 'T127'
root = "/cnrm/amacs/DATA/OBS/netcdf/${frequency}"
patmonth = root + "_mean/gpcp/${variable}_gpcp.${grid}.nc"
patday = root + "/gpcp/${variable}_gpcp.${grid}.nc"
dataloc(project='gpcp', organization='generic', url=[patmonth, patday])
# Defining alias and derived variables for GPCP, together with filenames
##############################################################################
# Original data is mm/day
calias("gpcp", 'precip', 'precip', filenameVar='pr')
# Compute in SI
calias("gpcp",
'pr',
'precip',
scale=1. / 86400.,
units="kg m-2 s-1",
filenameVar='pr')
from climaf.dataloc import dataloc
from climaf.classes import cproject, calias, cdef
from climaf.site_settings import atCNRM
if atCNRM:
cproject('cruts3','grid') # no grid writes as '', otherwise as e.g. 'T127'
url1_cruts3="/cnrm/amacs/DATA/OBS/netcdf/monthly_mean/cruts3/${variable}_cru_ts_3${grid}.nc" #for original grid
url2_cruts3="/cnrm/amacs/DATA/OBS/netcdf/monthly_mean/cruts3/${variable}_cru_ts_3.${grid}.nc" #for other grids write e.g. as : grid ='T127'
dataloc(project='cruts3', organization='generic', url=[url1_cruts3,url2_cruts3])
# Defining alias and derived variables for CRUTS3, together with filenames
##############################################################################
calias("cruts3",'clt' ,'cld' ,filenameVar='cld')
calias("cruts3",'evspsbl','pet' ,scale=1./86400. ,filenameVar='pet',units="kg m-2 s-1")
#pet:="potential evapotranspiration"; units="mm/day"
#evspsbl:="water_evaporation_flux" en kg.m-2.s-1
calias("cruts3",'pr' ,'pr' ,scale=1./(86400.*30.3),filenameVar='pr', units="kg m-2 s-1")
#pr:="precipitation"; units="mm"
#pr[CMIP5]:="precipitation" en kg.m-2.s-1
calias("cruts3",'tasmin','tmn' ,scale=1., offset=273.15 ,filenameVar='tmn', units="K")
calias("cruts3",'tas' ,'tmp' ,scale=1., offset=273.15 ,filenameVar='tmp', units="K")
calias("cruts3",'tasmax','tmx' ,scale=1., offset=273.15 ,filenameVar='tmx', units="K")
calias("cruts3",'prw' ,'vap' ,scale=1./0.0980665 ,filenameVar='vap', units="kg.m-2")
# Next command will lead to explore all directories in 'urls_NEMO'
# for searching data for a CliMAF dataset (by function ds) except if
# a more specific dataloc entry matches the arguments to 'ds'
dataloc(project="NEMO", organization="generic", url=urls_NEMO)
# -- Note:
# -- In the project NEMO, we have defined aliases for both the CMIP variable names (aliased to the old igcm names
# when necessary)
# -- and the old IGCM names to take advantage of the mechanisms behind calias (scale, offset, filenameVar)
# ---------------------------------------- #
# -- Aliases to the CMIP variable names -- #
# OCE
calias("NEMO", 'tos', offset=273.15, filenameVar='grid_T')
calias("NEMO", 'sos', filenameVar='grid_T')
calias("NEMO", 'thetao', offset=273.15, filenameVar='grid_T')
calias("NEMO", 'so', filenameVar='grid_T')
calias("NEMO", 'zos', filenameVar='grid_T')
calias("NEMO", 'mlotst', 'mldr10_3', filenameVar='grid_T')
calias("NEMO", 'mlddt02', 'mld_dt02', filenameVar='grid_T')
calias("NEMO", 'hc300', scale=1.E-9, filenameVar='grid_T')
calias("NEMO", 'wfo', filenameVar='grid_T')
# ICE
calias("NEMO", 'sic', 'siconc', scale=100, filenameVar="icemod")
calias("NEMO", 'sit', 'sithic', filenameVar="icemod")
# ATM general variables
calias("NEMO", 'pr', 'precip', filenameVar='histmth')
"""
from climaf.dataloc import dataloc
from climaf.classes import cproject, calias
from climaf.site_settings import atCNRM
if atCNRM:
cproject('erai-land','grid') # no grid writes as '_' , otherwise as e.g. 'T127'
root="/cnrm/vdr/DATA/OBS/netcdf/monthly_mean/erai-land/erai_???_mm_${variable}"
suffix="YYYY-YYYY.nc"
#
url_erai_land1=root+"${grid}"+suffix #for original grid
url_erai_land2=root+".${grid}."+suffix #for other grids write e.g. as : grid='T127'
#
dataloc(project='erai-land', organization='generic', url=[url_erai_land1,url_erai_land2])
# Defining alias and derived variables for ERAI-land, together with filenames
##############################################################################
#asn:="Snow albedo" sans dimension
#calias("erai-land",'' ,'asn' ,filenameVar='ASN')
#calias("erai-land",'snw' ,'rsn' , scale= 'snd',filenameVar='RSN') ?
#rsn=Snow density "kg m**-3"ds .nc
calias("erai-land",'snd' ,'sd' ,filenameVar='SD')
"""
from climaf.dataloc import dataloc
from climaf.classes import cproject, calias
from climaf.site_settings import atCNRM
if atCNRM:
cproject('erai-land',
'grid') # no grid writes as '_' , otherwise as e.g. 'T127'
root = "/cnrm/amacs/DATA/OBS/netcdf/monthly_mean/erai-land/erai_???_mm_${variable}"
suffix = "${PERIOD}.nc"
#
url_erai_land1 = root + "${grid}" + suffix # for original grid
url_erai_land2 = root + ".${grid}." + suffix # for other grids write e.g. as : grid='T127'
#
dataloc(project='erai-land',
organization='generic',
url=[url_erai_land1, url_erai_land2])
# Defining alias and derived variables for ERAI-land, together with filenames
##############################################################################
# asn:="Snow albedo" sans dimension
# calias("erai-land",'' ,'asn' ,filenameVar='ASN')
# calias("erai-land",'snw' ,'rsn' , scale= 'snd',filenameVar='RSN') ?
# rsn=Snow density "kg m**-3"ds .nc
calias("erai-land", 'snd', 'sd', filenameVar='SD')
dataloc(project="emn36", organization="generic", url=[pathgI, pathgO])
# Define default values
############################################
# You do not need to use a GROUPs experiment
cdef("group", "", project="emn36")
cdef("frequency", "monthly", project="emn36")
cfreqs("emn36", {"daily": "d", "monthly": "m"})
# More details about data organization
############################################
# Describe how to locate some ocean variables in multi-variable data files
calias("emn36", 'e-p', filenameVar='S')
calias("emn36", 'fcalva', filenameVar='S')
calias("emn36", 'fcalvg', filenameVar='S')
calias("emn36", 'friver', filenameVar='S')
calias("emn36", 'flake', filenameVar='S')
calias("emn36", 'omlmax', filenameVar='S')
calias("emn36", 'so', filenameVar='S')
calias("emn36", 'sos', filenameVar='S')
calias("emn36", 'wfo', filenameVar='S')
calias("emn36", 'thetao', filenameVar='T')
calias("emn36", 'tos', filenameVar='T')
calias("emn36", 'tossq', filenameVar='T')
calias("emn36", 'zos', filenameVar='T')
calias("emn36", 'zossq', filenameVar='T')
calias("emn36", 'nshfls', filenameVar='T')
cproject('ref_ts', ('frequency', 'monthly'), ('product', '*'),
('period', '1900-2050'),
'obs_type',
'table',
ensemble=['product'])
cfreqs('ref_ts', {'monthly': 'mo', 'daily': 'day'})
cdef('variable', '*', project='ref_ts')
cdef('product', '*', project='ref_ts')
cdef('simulation', 'refproduct', project='ref_ts')
cdef('period', '1980-2005', project='ref_ts')
cdef('obs_type', '*', project='ref_ts')
cdef('table', '*', project='ref_ts')
calias('ref_climatos', 'O2', scale=44.64)
# Obs de MOC RAPID (Il a fallu bricoler les donnees d'origine pour la dimension time au debut et unlim)
#dataloc(project="ref_climatos",organization="generic",
# url='/home/esanchez/data_climaf/${variable}_vertical_unlim.nc')
calias(project='ref_climatos',
variable='moc',
fileVariable='stream_function_mar',
filenameVar='moc')
calias(project='ref_ts',
variable='moc',
fileVariable='stream_function_mar',
filenameVar='moc')
if (root):
#pattern1=root+"ts/*/${frequency}/${variable}/${variable}_*mon_${product}*_YYYYMM-YYYYMM.nc"
pattern1 = root + "ts/*/${frequency}/${variable}/${variable}_${table}_${product}_${obs_type}_${PERIOD}.nc"
# -- call the dataloc CliMAF function
# -- CMIP5
dataloc(project='CMIP5', organization='generic', url=pattern1)
dataloc(project='CMIP5', organization='generic', url=patternf)
# -- CMIP5_extent
dataloc(project='CMIP5_extent', organization='generic', url=pattern1)
dataloc(project='CMIP5_extent', organization='generic', url=pattern2)
# -- Make the alias and default values for both projects
for project in ['CMIP5', 'CMIP5_extent']:
# calias(project, 'tos', offset=273.15)
# calias(project, 'thetao', offset=273.15)
# calias(project, 'sivolu', 'sivol')
# calias(project, 'sic', 'siconc')
# calias(project, 'sit', 'sithick')
calias(project, 'NO3', 'no3')
calias(project, 'PO4', 'po4')
calias(project, 'Si', 'si')
calias(project, 'O2', 'o2')
cdef('root', root, project=project)
# cdef('institute' , '*' , project=project)
cdef('table', '*', project=project) # impossible, because of ambiguities
cdef('realm', '*', project=project)
cdef('realization', 'r1i1p1', project=project)
cdef('experiment', 'historical', project=project)
cdef('version', '*', project=project)
cdef('frequency', '*', project=project)
cdef('extent_experiment', 'rcp85', project='CMIP5_extent')
# -- Declare a CMIP5-Adjust CliMAF project: bias corrected CMIP5 simulations
"""
This module declares the project E-OBS :
This archive is available on Ciclad (IPSL)
The specific attributes are:
- grid : '*'
"""
from climaf.dataloc import dataloc
from climaf.classes import cproject, calias, cfreqs, cdef
from climaf.site_settings import onCiclad, atTGCC, atIDRIS, atCerfacs, atCNRM
if onCiclad:
# -- Create E-OBS CliMAF project
EOBS_pattern = '/bdd/E-OBS/Grid_${grid}/${variable}_${grid}_${PERIOD}_v15.0.nc4'
cproject('E-OBS', 'grid', 'frequency', separator='%')
dataloc(project='E-OBS', organization='generic', url=EOBS_pattern)
# -- Make a
cdef('frequency', 'daily', project='E-OBS')
cdef('grid', '*deg_*', project='E-OBS')
cdef('period', '*', project='E-OBS')
cdef('variable', '*', project='E-OBS')
cfreqs('E-OBS', {'daily': 'day'})
calias('E-OBS', 'tasmin', 'tn')
calias('E-OBS', 'tasmax', 'tx')
root = "/cnrm/amacs/DATA/OBS/netcdf/${frequency}"
patmonth1 = root + "_mean/erai/erai_???_mm_${variable}${grid}${PERIOD}.nc" #for original grid
patmonth2 = root + "_mean/erai/erai_???_mm_${variable}.${grid}.${PERIOD}.nc" #for other grids e.g. : grid ='T42' or 'T127'
patday1 = root + "/erai/ei_${variable}${grid}${PERIOD}.nc" #for original grid
patday2 = root + "/erai/ei_${variable}_${grid}_${PERIOD}.nc" #for other grids e.g.: grid ='T42' or 'T127'
dataloc(project='erai',
organization='generic',
url=[patmonth1, patmonth2, patday1, patday2])
# Defining alias and derived variables for ERAI, together with filenames
##############################################################################
# Valid both for daily and monthly data (to check : energy flux in W for
# daily and Joules for monthly ????)
calias("erai", 'sic', 'ci', filenameVar='CI')
calias("erai", 'tos', 'sst', filenameVar='SSTK')
calias("erai", 'z', 'z', filenameVar='Z')
calias("erai", 'ta', 't', filenameVar='T')
calias("erai", 'ua', 'u', filenameVar='U')
calias("erai", 'va', 'v', filenameVar='V')
calias("erai", 'hus', 'q', filenameVar='Q')
calias("erai", 'prw', 'tcw', filenameVar='TCW')
calias("erai", 'prc', 'cp', filenameVar='CP')
calias("erai", 'prl', 'lsp', filenameVar='LSP')
calias("erai", 'prsn', 'sf', filenameVar='SF')
calias("erai", 'hfss', 'sshf', filenameVar='SSHF')
calias("erai", 'hfls', 'slhf', filenameVar='SLHF')
calias("erai", 'ps', 'msl', filenameVar='MSL')
calias("erai", 'clt', 'tcc', filenameVar='TCC')
calias("erai", 'uas', 'u10', filenameVar='10U')
# -- Specify the pattern
pattern1 = "${root}/${login}/IGCM_OUT/${IPSL_MODEL}/${status}/${experiment}/${simulation}/CMIP6/${realm}/" \
"${variable}_*${frequency}_${model}_${experiment}_${realization}_${grid}_${PERIOD}.nc"
pattern2 = "${root}/${login}/IGCM_OUT/${IPSL_MODEL}/${status}/${experiment}/${simulation}/CMIP6/${realm}/" \
"${variable}_${table}_${model}_${experiment}_${realization}_${grid}_${PERIOD}.nc"
# pattern3="${root}/${login}/IGCM_OUT/${IPSL_MODEL}/${status}/${experiment}/${simulation}/CMIP6/${realm}/"
# "${variable}_${MIP_prefix}${frequency}${MIP_suffix}${qualifier}_${model}_${experiment}_${realization}_"
# "${grid}_${PERIOD}.nc"
# pattern4="${root}/${login}/IGCM_OUT/${IPSL_MODEL}/${status}/${experiment}/${simulation}/CMIP6/${realm}/"
# "${variable}_${miptable}_${model}_${experiment}_${realization}_${grid}_${PERIOD}.nc"
# -- Si on precise seulement la MIP table, on n'a pas la frequence ;
# on pourrait rajouter une analyse de la table, si elle existe, pour rajouter la frequence?
#
# pattern1="${root}/*/${variable}_${table}_${model}_${experiment}_${realization}_${gr}_${PERIOD}.nc"
# pattern2="${root}/${variable}_${table}_${model}_${experiment}_${realization}_${gr}_${PERIOD}.nc"
# -- call the dataloc CliMAF function
dataloc(project='IGCM_CMIP6', organization='generic', url=[pattern2])
calias('IGCM_CMIP6', 'tos', offset=273.15)
calias('IGCM_CMIP6', 'thetao', offset=273.15)
calias('IGCM_CMIP6', 'sic', 'siconc')
calias('IGCM_CMIP6', 'sit', 'sithick')
calias('IGCM_CMIP6', 'wfo', 'wfonocorr')
calias('IGCM_CMIP6', 'sivolu', 'sivol')
calias('IGCM_CMIP6', 'NO3', 'no3')
calias('IGCM_CMIP6', 'PO4', 'po4')
calias('IGCM_CMIP6', 'Si', 'si')
calias('IGCM_CMIP6', 'O2', 'o2')
# More details about data organization
############################################
# Describe how to locate some ocean variables in multi-variable data files
#calias("em", 'sos' ,filenameVar='S*')
#calias("em", 'so' ,filenameVar='S*')
#calias("em", 'fcalva' ,filenameVar='S*')
#calias("em", 'fcalvg' ,filenameVar='S*')
#calias("em", 'omlmax' ,filenameVar='S*')
#calias("em", 'wfo' ,filenameVar='S*')
#calias("em", 'friver' ,filenameVar='S*')
#calias("em", 'e-p' ,filenameVar='S*')
#calias("em", 'flake' ,filenameVar='S*')
calias("em", 'to' ,offset=273.15,filenameVar='T_table2.2')
calias("em", 'tos' ,offset=273.15, filenameVar='T_table2.2')
calias("em", 'tossq' ,filenameVar='T_table2.2')
calias("em", 'zos' ,filenameVar='T_table2.2')
calias("em", 'zossq' ,filenameVar='T_table2.2')
calias("em", 'zosto' ,filenameVar='T_table2.2')
calias("em", 'omlmax' ,filenameVar='T_table2.2')
calias("em", 'pbo' ,filenameVar='T_table2.2')
calias("em", 'rhopoto' ,filenameVar='T_table2.2')
calias("em", 'so' ,filenameVar='T_table2.2')
calias("em", 'sos' ,filenameVar='T_table2.2')
calias("em", 'thetao' ,filenameVar='T_table2.2')
calias("em", 'emps' ,filenameVar='T_table2.5')
calias("em", 'evt' ,filenameVar='T_table2.5')
calias("em", 'evs' ,filenameVar='T_table2.5')
configuration files
Simulation names (or 'EXPIDs') are assumed to be unique in the namespace defined by the user's configuration
file, which may include shared simulation
Example for defining an EM dataset::
>>> tas=ds(project='EM', simulation='GSAGNS1', variable='tas', period='1975', frequency='monthly', realm='L')
A number of Seaice fields are duly described with 1.e+20 as missing value (which is ill described in data files); see code for details
"""
from climaf.site_settings import atCNRM
if atCNRM :
from climaf.dataloc import dataloc
from climaf.classes import cproject, calias, cfreqs
cproject('EM' , ('frequency','monthly'), ('realm','*') )
cfreqs('EM',{'monthly':'mon' , 'daily':'day1' })
dataloc(project='EM', organization='EM', url=['dummy'])
# Ideally, one should be able to write :
#cmissing('EM',1.e+20, realm='I')
calias('EM',[ 'sic', 'sit', 'sim', 'snd', 'ialb', 'tsice', 'mpalb', 'snomlet',
'tmelt', 'bmelt', 'snc','sic1','sic2', 'sic3', 'sic4', 'ssi', 'ageice'],
missing=1.e+20)
if atCerfacs:
root = "/data/scratch/globc/dcom/globc_obs/OBS4MIPS_ANA4MIPS_CMOR/Tier1/ERA5/"
if atCNRM:
root = "/cnrm/est/COMMON/climaf/reference_datasets_from_IPSL/"
cproject('ref_era5cerfacs', ('frequency', 'monthly'),
'product', ('period', '1979-2018'),
'obs_type',
'table',
separator='%')
cfreqs('ref_era5cerfacs', {'monthly': 'mon', 'daily': 'day'})
cdef('variable', '*', project='ref_era5cerfacs')
cdef('product', 'ERA5', project='ref_era5cerfacs')
cdef('period', '1979-2018', project='ref_era5cerfacs')
cdef('obs_type', 'reanalysis', project='ref_era5cerfacs')
cdef('table', '*', project='ref_era5cerfacs')
# Obs de MOC RAPID (Il a fallu bricoler les donnees d'origine pour la dimension time au debut et unlim)
# dataloc(project="ref_climatos",organization="generic",
# url='/home/esanchez/data_climaf/${variable}_vertical_unlim.nc')
calias(project='ref_era5cerfacs',
variable='moc',
fileVariable='stream_function_mar',
filenameVar='moc')
if root:
pattern1 = root + "${variable}_${table}_${obs_type}_${product}_${PERIOD}.nc"
dataloc(project='ref_era5cerfacs', organization='generic', url=[pattern1])
#calias("ref_era5cerfacs","tas",offset=273.15)
# a more specific dataloc entry matches the arguments to 'ds'
dataloc(project="IGCM_OUT_old",
organization="generic",
url=urls_IGCM_OUT_old)
# -- Note:
# -- In the project IGCM_OUT_old, we have defined aliases for both the CMIP variable names (aliased to the old igcm names when necessary)
# -- and the old IGCM names to take advantage of the mechanisms behind calias (scale, offset, filenameVar)
# ---------------------------------------- #
# -- Aliases to the CMIP variable names -- #
# OCE
calias("IGCM_OUT_old",
'tos',
'sosstsst',
offset=273.15,
filenameVar='grid_T')
calias("IGCM_OUT_old", 'sos', 'sosaline', filenameVar='grid_T')
calias("IGCM_OUT_old",
'thetao',
'votemper',
offset=273.15,
filenameVar='grid_T')
calias("IGCM_OUT_old", 'so', 'vosaline', filenameVar='grid_T')
calias("IGCM_OUT_old", 'zos', 'sossheig', filenameVar='grid_T')
calias("IGCM_OUT_old", 'mlotst', 'mldr10_3', filenameVar='grid_T')
calias("IGCM_OUT_old", 'mlddt02', 'mld_dt02', filenameVar='grid_T')
calias("IGCM_OUT_old",
'hc300',
'sohtc300',
from climaf.site_settings import atCNRM, onCiclad
from climaf.operators import derive
p = cproject("CMIP5",
"model",
"experiment", ("frequency", "monthly"), ("table", "*"),
("realm", "*"), ("version", "last"),
ensemble=["model", "simulation"])
cdef("simulation", "r1i1p1", project="CMIP5")
# Frequency alias
cfreqs('CMIP5', {'monthly': 'mon', 'daily': 'day'})
urls_CMIP5 = None
if atCNRM:
# Declare the directory for CNRM-CM CMIP5 data on CNRM's Lustre file system.
urls_CMIP5 = ["/cnrm/cmip/cnrm/ESG"]
if onCiclad:
# Declare a list of root directories for CMIP5 data on IPLS's Ciclad file system
urls_CMIP5 = ["/prodigfs/project/"]
if urls_CMIP5:
# Next command will lead to explore all directories in 'url'
# for searching data for a CliMAF dataset (by function ds) except if
# a more specific dataloc entry matches the arguments to 'ds'
dataloc(project="CMIP5", organization="CMIP5_DRS", url=urls_CMIP5)
calias('CMIP5', 'hflsevap', 'hfls', scale=1. / 2.5e6)
derive('CMIP5', 'pme', 'minus', 'pr', 'hflsevap')
