def launchSingleMarxanAnalysis(setupObject, numIter, numRun, blmValue, missingProp, initialProp, outputName, extraOutputsBool):
marxanInputDict = cluz_functions2.marxanInputDict(setupObject, numIter, numRun, blmValue, missingProp, initialProp, outputName, extraOutputsBool)
cluz_functions2.makeMarxanInputFile(setupObject, marxanInputDict)
marxanBatFileName = cluz_functions2.makeMarxanBatFile(setupObject)
subprocess.Popen([marxanBatFileName])
cluz_functions2.waitingForMarxan(setupObject, outputName)
bestOutputFile = setupObject.outputPath + os.sep + outputName + "_best.txt"
summedOutputFile = setupObject.outputPath + os.sep + outputName + "_ssoln.txt"
return bestOutputFile, summedOutputFile
def launchMultiMarxanAnalysis(setupObject, numIter, numRun, blmValue, missingProp, initialProp, outputName, extraOutputsBool, numParallelAnalyses):
parallelAnalysesDetailsList = cluz_functions2.makeParallelAnalysesDetailsList(numParallelAnalyses, outputName, numRun)
for (numRun, parallelOutputName) in parallelAnalysesDetailsList:
marxanInputDict = cluz_functions2.marxanInputDict(setupObject, numIter, numRun, blmValue, missingProp, initialProp, parallelOutputName, extraOutputsBool)
cluz_functions2.makeMarxanInputFile(setupObject, marxanInputDict)
marxanBatFileName = cluz_functions2.makeMarxanBatFile(setupObject)
subprocess.Popen([marxanBatFileName])
time.sleep(2)
cluz_functions2.waitingForParallelMarxan(setupObject, parallelAnalysesDetailsList)
cluz_functions2.makeBestParralelFile(setupObject, outputName, parallelAnalysesDetailsList)
bestOutputFile = setupObject.outputPath + os.sep + outputName + "_best.txt"
cluz_functions2.makeSummedParralelFile(setupObject, outputName, parallelAnalysesDetailsList)
summedOutputFile = setupObject.outputPath + os.sep + outputName + "_ssoln.txt"
return bestOutputFile, summedOutputFile
def runCalibrateMarxan(setupObject, numAnalyses, numRunList, numIterList, blmValueList, outputNameBase, resultPathText):
missingPropList = [1.0] * numAnalyses
initialPropList = [0.2] * numAnalyses
calibrateResultsDict = {}
for analysisNumber in range(0, numAnalyses):
numIter = numIterList[analysisNumber]
numRun = numRunList[analysisNumber]
blmValue = blmValueList[analysisNumber]
missingProp = missingPropList[analysisNumber]
initialProp = initialPropList[analysisNumber]
outputName = outputNameBase + str(analysisNumber + 1)
extraOutputsBool = True
marxanInputDict = cluz_functions2.marxanInputDict(setupObject, numIter, numRun, blmValue, missingProp, initialProp, outputName, extraOutputsBool)
cluz_functions2.makeMarxanInputFile(setupObject, marxanInputDict)
marxanBatFileName = cluz_functions2.makeMarxanBatFile(setupObject)
subprocess.Popen([marxanBatFileName])
time.sleep(2)
cluz_functions2.waitingForMarxan(setupObject, outputName)
calibrateResultsDict[analysisNumber] = cluz_functions2.makeAnalysisResultsDict(setupObject, marxanInputDict)
cluz_functions2.makeCalibrateOutputFile(resultPathText, calibrateResultsDict)