Exemplo n.º 1
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def CopyLibrary(path):
    new_path = os.path.join(frameworks_dir, os.path.basename(path))
    args = ["ditto", "--arch=i386", "--arch=x86_64", path, new_path]
    commands.append(args)
    args = ["chmod", "u+w", new_path]
    commands.append(args)
    return new_path
Exemplo n.º 2
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	def activateSamba(self):
		commands = []
		if fileExists('/etc/rc2.d/S20samba'):
			commands.append('update-rc.d -f samba remove')
		else:
			commands.append('update-rc.d -f samba defaults')
		self.Console.eBatch(commands, self.StartStopCallback, debug=True)
Exemplo n.º 3
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def buildCommands( logins, machines, clients ):
    """
       @summary: Build all the commands that will be needed to synch the files that need to be synchronized.
       
       @param logins: Logins to be used to build the command.
       
       @param machines: Machines with whom you want to be synchronised.
       
       @param clients: Specific clients/sources for wich you want to be synchronised.
       
       @return: The list of commands that need to be run to be synchronised.
          
    """ 
    
    commands = []

    if clients[0] == "All" :
        for login,machine in map( None, logins, machines) :
            for i in range(3):#do 3 times in case of currently turning log files. 
                commands.append( "rsync -avzr  -e ssh %s@%s:%s %s"  %( login, machine, STATSPATHS.STATSPICKLES, STATSPATHS.STATSPICKLES )  )
          
    else:
        
        for client in clients :
            path = STATSPATHS.STATSPICKLES + client + "/"
            for login, machine in  map( None, logins, machines ):
                for i in range(3):#do 3 times in case of currently turning log files.
                    commands.append( "rsync  -avzr -e ssh %s@%s:%s %s"  %( login, machine, path, path )  )

    
    return commands 
Exemplo n.º 4
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def CopyLibrary(path):
  new_path = os.path.join(frameworks_dir, os.path.basename(path))
  args = ['ditto', '--arch=i386', '--arch=x86_64', path, new_path]
  commands.append(args)
  args = ['chmod', 'u+w', new_path]
  commands.append(args)
  return new_path
Exemplo n.º 5
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def get_random_command(request):
    """S."""
    commands = []
    bash = {'command': 'uptime', 'args': ''}
    commands.append(bash)
    bash = {'command': 'host', 'args': remote_addr(request)}
    commands.append(bash)
    return random.choice(commands)
Exemplo n.º 6
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def CopyLibrary(path):
  print "CopyLibrary:", path
  CopyDSYM(path)
  new_path = os.path.join(binary_dir, os.path.basename(path))
  args = ['ditto', '--arch=x86_64', path, new_path]
  commands.append(args)
  args = ['chmod', 'u+w', new_path]
  commands.append(args)
  return new_path
Exemplo n.º 7
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def output_to_command(string):
	numberEntries = string.count("new")
	string = string.split("-")

	for i in xrange(numberEntries):
		command = Command()
		command.mic = int(string[5 * i + 1])
		command.text = string[5 * i + 2]
		command.time = float(string[5 * i + 3])
		command.amplitude = float(string[5 * i + 4])
		commands.append(command)
Exemplo n.º 8
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def initCommands() :
	"""initCommands() -> list of python modules
	
	return the list of avaible commands
	"""
	import plugins
	import os, os.path
	
	commandsDir = os.path.dirname(plugins.__file__)
	commands = []
	for com in os.listdir(commandsDir):
		if com.endswith(".py") and com != "__init__.py" :
			commands.append(__import__("uptodate.plugins."+com[:-3], globals, locals, "uptodate.plugins"))
	return commands
Exemplo n.º 9
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def readconfcues(show):
    global cues
    cues = []
    f = open("./Shows/" + show + "/" + settings["cuesfile"], "r").read()
    f = removecomments(f)
    sectionsanddata = re_startsection.split(f)[1:]
    while sectionsanddata:
        commands = []
        comment = sectionsanddata[0].strip()
        data_raw = sectionsanddata[1].strip()
        for line in data_raw.splitlines():
            commands.append(line.strip())
        a = CueObject(comment, commands)
        cues.append(a)
        sectionsanddata = sectionsanddata[2:]
Exemplo n.º 10
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    def getCommands(self,user,host="localhost"):
        if(host=="localhost" or host==None):
            host=socket.gethostname()

        commands = []

        match = False
        for rule in self.rules:
            if(rule.matchUser(user) and rule.matchHost(host)):
                match = True
                for cmnd in rule.command:
                    commands.append(cmnd)
        #if(not match):
            #commands.append("No Sudo Matches")

        return commands
Exemplo n.º 11
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def version_independent_misc_cleanup():
  commands = []

  # Remove /export/hd?3 dirs
  rm_cmd = ("echo %s | tr \\  \\\\n | fgrep -v versionmanager | xargs rm -rf" %
            REMOVE_EXPORT_DIRS)
  commands.append(comment('Removing %s') % REMOVE_EXPORT_DIRS )
  commands.append(rm_cmd)

  # Restore dirs
  for dir in RESTORE_DIRS:
    commands.append(comment('Creating %s') % dir )
    commands.append("mkdir -p %s" % dir)
    commands.append("chown nobody:nobody %s" % dir)

  return commands
Exemplo n.º 12
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	def SambaStartStop(self):
		commands = []
		if not self.my_Samba_run:
			commands.append('/etc/init.d/samba start')
		elif self.my_Samba_run:
			commands.append('/etc/init.d/samba stop')
			commands.append('killall nmbd')
			commands.append('killall smbd')
		self.Console.eBatch(commands, self.StartStopCallback, debug=True)
Exemplo n.º 13
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    def rm_lock_uuid(mirror, username, password):
        if username and password:
            extra_opt = " --username %(username)s --password %(password)s " % locals()
        else:
            extra_opt = " "

        commands = []
        commands.append( SVNCMD + extra_opt + "pd svn:sync-lock --revprop -r0 %(mirror)s" % locals() )
        commands.append( SVNCMD + extra_opt + "pd svn:sync-currently-copying --revprop -r0 %(mirror)s" % locals() )
        for command in commands:
            proc = Popen( command, stdout=PIPE, stderr=STDOUT, close_fds=True, shell=True )
            output = proc.communicate()[0]
            if proc.returncode != 0:
                log.error( "Failed to remove sync lock from %s" % mirror )
                if output:
                    log.error( "Command output:\n" + output )
                return False
Exemplo n.º 14
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def CopyDSYM(dep):
    frameworkString = '.framework'
    pos = dep.rfind(frameworkString)
    dsym_path = dep + ".dSYM"
    if pos > -1:
      frameworkPath = dep[:pos+len(frameworkString)]
      dsym_path = frameworkPath + ".dSYM"

    if os.path.exists(dsym_path):
      new_dsym_path = os.path.join(dsyms_dir, os.path.basename(dsym_path))
      print("CopyDSYM: [%s]" % dsym_path)
      args = ['rm', '-rf', os.path.join(dsyms_dir, os.path.basename(dsym_path))]
      commands.append(args)
      args = ['cp', '-R', dsym_path, dsyms_dir]
      commands.append(args)
    else:
      print("CopyDSYM: no .dSYM found.")
Exemplo n.º 15
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def rosExecute(apiros, command):

    x = [""]
    commands = command.split(" ")

    commands.append(" ")
    result = []
    apiros.writeSentence(commands)
    while True:
        x = apiros.readSentence()
        # print x
        if x[0] == "!done":
            break
        result.append(x)

    # s.close()
    return make_dict(result)
Exemplo n.º 16
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def version_dependent_named_cleanup(version):
  commands = []

  # Removing version specific zone information from named. Starting from zone "ent<version> ,
  # 5 lines need to be removed.
  commands.append(comment('Modifying named for version: %s' %version))
  commands.append("sed '/^zone \"ent%s/{N;N;N;N;d;}' /etc/named.conf > /etc/named.conf.new" % version.replace('.', '-'))
  commands.append("cp /etc/named.conf /etc/named.conf.bak")
  commands.append("mv /etc/named.conf.new /etc/named.conf")

  return commands
Exemplo n.º 17
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def version_independent_named_cleanup():
  commands = []

  # Removing all the zone information from named. Starting from zone "ent ,
  # 5 lines need to be removed.
  commands.append(comment('Modifying named for all versions'))
  commands.append("sed '/^zone \"ent/{N;N;N;N;d;}' /etc/named.conf > /etc/named.conf.new" )
  commands.append("cp /etc/named.conf /etc/named.conf.bak")
  commands.append("mv /etc/named.conf.new /etc/named.conf")

  return commands
Exemplo n.º 18
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 def test_003_can_mount_volume(self):
     ip = self.data['instance'].private_dns_name
     conn = self.connect_ssh(ip, TEST_KEY)
     commands = []
     commands.append('mkdir -p /mnt/vol')
     commands.append('mkfs.ext2 %s' % self.device)
     commands.append('mount %s /mnt/vol' % self.device)
     commands.append('echo success')
     stdin, stdout, stderr = conn.exec_command(' && '.join(commands))
     out = stdout.read()
     conn.close()
     if not out.strip().endswith('success'):
         self.fail('Unable to mount: %s %s' % (out, stderr.read()))
Exemplo n.º 19
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    def RunJob(self,dataset):

        # Getting the dataset name    
        name=InstanceName.Get(dataset.name)

        # Creating Output folder is not defined
        if not os.path.isdir(self.path+"/Output/"+name):
            os.mkdir(self.path+"/Output/"+name)
            
        # folder where the program is launched
        folder = self.path+'/Output/'+name

        # shell command
        commands = ['../../Build/MadAnalysis5job']

        # Weighted events
        if not dataset.weighted_events:
            commands.append('--no_event_weight')

        # Release
        commands.append('--ma5_version="'+self.main.version+';'+self.main.date+'"')

        # Inputs
        commands.append('../../Input/'+name+'.list')

        # Running SampleAnalyzer
        result = ShellCommand.Execute(commands,folder)

        return result
Exemplo n.º 20
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 def test_003_me_can_mount_volume(self):
     conn = self.connect_ssh(data['private_ip'], test_key)
     # HACK: the tiny image doesn't create the node properly
     #       this will make /dev/vd* if it doesn't exist
     stdin, stdout, stderr = conn.exec_command('grep %s /proc/partitions | `awk \'{print "mknod /dev/"$4" b "$1" "$2}\'`' % DEVICE)
     commands = []
     commands.append('mkdir -p /mnt/vol')
     commands.append('mkfs.ext2 /dev/%s' % DEVICE)
     commands.append('mount /dev/%s /mnt/vol' % DEVICE)
     commands.append('echo success')
     stdin, stdout, stderr = conn.exec_command(' && '.join(commands))
     out = stdout.read()
     conn.close()
     if not out.strip().endswith('success'):
         self.fail('Unable to mount: %s %s' % (out, stderr.read()))
Exemplo n.º 21
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def CopyFramework(path):
  parts = path.split(os.sep)
  print "CopyFramework:", path
  for i, part in enumerate(parts):
    matchObj = re.match(r'(\w+\.framework)', part)
    if matchObj:
      full_path = os.path.join(frameworks_dir, *parts[i:-1])
      framework = matchObj.group(1)
      break
  args = ['mkdir', '-p', full_path]
  commands.append(args)
  args = ['ditto', '--arch=x86_64', path, full_path]
  commands.append(args)
  args = ['chmod', 'u+w', os.path.join(full_path, parts[-1])]
  commands.append(args)
  args = ['chmod', 'u+w', os.path.join(frameworks_dir, framework, "Resources")]
  commands.append(args)

  info_plist = os.path.join(os.path.split(path)[0], '..', '..', 'Contents', 'Info.plist')
  if os.path.exists(info_plist):
    args = ['cp', '-r', info_plist, os.path.join(frameworks_dir, framework, "Resources")]
    commands.append(args)
  return os.path.join(full_path, parts[-1])
Exemplo n.º 22
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def CopyPlugin(path, subdir):
    new_path = os.path.join(plugins_dir, subdir, os.path.basename(path))
    args = ["mkdir", "-p", os.path.dirname(new_path)]
    commands.append(args)
    args = ["ditto", "--arch=i386", "--arch=x86_64", path, new_path]
    commands.append(args)
    args = ["chmod", "u+w", new_path]
    commands.append(args)
    return new_path
Exemplo n.º 23
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def CopyPlugin(path, subdir):
  new_path = os.path.join(plugins_dir, subdir, os.path.basename(path))
  args = ['mkdir', '-p', os.path.dirname(new_path)]
  commands.append(args)
  args = ['ditto', '--arch=i386', '--arch=x86_64', path, new_path]
  commands.append(args)
  args = ['chmod', 'u+w', new_path]
  commands.append(args)
  return new_path
Exemplo n.º 24
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def init():
    global command_names
    global known_commands
    #logging.debug("initCommands")

    commands = []
    for d in ["AVAgent", "AVCommon", "AVMaster"]:
        for side in ["server", "client", "meta"]:
            search = os.path.join(parent, d, "commands", side, "*.py")
            dcommands = glob.glob(search)
            for dc in dcommands:
                name_file = os.path.split(dc)[1]
                name = os.path.splitext(name_file)[0]
                if name.startswith("__init__"):
                    continue

                path = "%s.%s.%s.%s" % (d, "commands", side, name)
                commands.append((name, side, path))
                #logging.debug("%s" % (name))

    for name, side, path in commands:
        m = importlib.import_module(path)
        m.side = side
        known_commands[name] = m
Exemplo n.º 25
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def CopyFramework(path):
  parts = path.split(os.sep)
  for i, part in enumerate(parts):
    if re.match(r'\w+\.framework', part):
      full_path = os.path.join(frameworks_dir, *parts[i:-1])
      break
  args = ['mkdir', '-p', full_path]
  commands.append(args)
  args = ['ditto', '--arch=i386', '--arch=x86_64', path, full_path]
  commands.append(args)
  args = ['chmod', 'u+w', os.path.join(full_path, parts[-1])]
  commands.append(args)

  menu_nib = os.path.join(os.path.split(path)[0], 'Resources', 'qt_menu.nib')
  if os.path.exists(menu_nib):
    args = ['cp', '-r', menu_nib, resources_dir]
    commands.append(args)

  return os.path.join(full_path, parts[-1])
Exemplo n.º 26
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def CopyFramework(path):
    parts = path.split(os.sep)
    for i, part in enumerate(parts):
        if re.match(r"\w+\.framework", part):
            full_path = os.path.join(frameworks_dir, *parts[i:-1])
            break
    args = ["mkdir", "-p", full_path]
    commands.append(args)
    args = ["ditto", "--arch=i386", "--arch=x86_64", path, full_path]
    commands.append(args)
    args = ["chmod", "u+w", os.path.join(full_path, parts[-1])]
    commands.append(args)

    menu_nib = os.path.join(os.path.split(path)[0], "Resources", "qt_menu.nib")
    if os.path.exists(menu_nib):
        args = ["cp", "-r", menu_nib, resources_dir]
        commands.append(args)

    return os.path.join(full_path, parts[-1])
Exemplo n.º 27
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def FixVLCPlugin(abs_path, subdir):
    broken_libs = GetBrokenLibraries(abs_path)
    FixAllLibraries(broken_libs)

    # print "Copying plugin....%s %s %s" % (plugins_dir, subdir, os.path.join(abs_path.split('/')[-2:]))
    new_path = os.path.join(plugins_dir, subdir, os.path.basename(abs_path))
    args = ["mkdir", "-p", os.path.dirname(new_path)]
    commands.append(args)
    args = ["ditto", "--arch=i386", "--arch=x86_64", abs_path, new_path]
    commands.append(args)
    args = ["chmod", "u+w", new_path]
    commands.append(args)
    for framework in broken_libs["frameworks"]:
        FixFrameworkInstallPath(framework, new_path)
    for library in broken_libs["libs"]:
        FixLibraryInstallPath(library, new_path)
Exemplo n.º 28
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def FixVLCPlugin(abs_path, subdir):
  broken_libs = GetBrokenLibraries(abs_path)
  FixAllLibraries(broken_libs)

  #print "Copying plugin....%s %s %s" % (plugins_dir, subdir, os.path.join(abs_path.split('/')[-2:]))
  new_path = os.path.join(plugins_dir, subdir, os.path.basename(abs_path))
  args = ['mkdir', '-p', os.path.dirname(new_path)]
  commands.append(args)
  args = ['ditto', '--arch=i386', '--arch=x86_64', abs_path, new_path]
  commands.append(args)
  args = ['chmod', 'u+w', new_path]
  commands.append(args)
  for framework in broken_libs['frameworks']:
    FixFrameworkInstallPath(framework, new_path)
  for library in broken_libs['libs']:
    FixLibraryInstallPath(library, new_path)
Exemplo n.º 29
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def FixId(path, library_name):
    id = '@executable_path/../Frameworks/%s' % library_name
    args = ['install_name_tool', '-id', id, path]
    commands.append(args)
Exemplo n.º 30
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def main(args):
  try:
    opts, pargs = getopt.getopt(args, "", ["inter=", "inter_ssh=",
                                           "version=", "machines=",
                                           "force" ])
  except:
    sys.exit(__doc__)

  # default values
  machines = []
  inter_machine = None
  inter_ssh_port = 22
  version = None
  force = 0

  if len(opts) == 0:
    # no flags were given, use old style args: <inter> <machine_list>
    if len(pargs) < 2: sys.exit(__doc__)
    inter_machine = pargs[0]
    machines = pargs[1:]
  else:
    # flags were given, use new style
    if len(pargs) != 0: sys.exit(__doc__)

    for name,value in opts:
      if name == '--inter': inter_machine = value
      elif name == '--inter_ssh': inter_ssh_port = string.atoi(value)
      elif name == '--version': version = value
      elif name == '--machines': machines = string.split(value, ',')
      elif name == '--force': force = 1

  if len(machines) == 0:
    sys.exit("ERROR: Must specify machines to clean")

  commands = []

  if version:
    # Cleanup up only a specific version of RPMS
    test_cmd = 'cat /export/hda3/%s/STATE 2>/dev/null' % version

    # Change the STATE file to "REMOVE"
    commands.append('echo REMOVE > /export/hda3/%s/STATE' % version)

    commands.extend( uninstall_version_rpms(version) )
    commands.append( "rm -rf /export/hd?3/%s" % version )

    # Remove any lingering chubby config info and localbabysitter files
    commands.append( "rm -f /etc/google/ent%s.chubby_cell "
                     "/etc/localbabysitter.d/*-%s.conf" %
                     (version.replace('.', '-'), version) )

    if force:
      # Kill any lingering processes with this version number
      commands.append( "/usr/bin/pkill -KILL -f '/%s/'" %
                       version.replace('.', '\\.') )
      commands.append( "/usr/bin/pkill -KILL -f '/%s/'" %
                       version.replace('.', '\\.') )

    commands.extend( version_dependent_named_cleanup(version) )

  else:
    # Uninstall all enterprise RPMS
    # all new versions should clean up after themselves in %preun/%postun
    test_cmd = 'cat /export/hda3/*/STATE 2>/dev/null'

    # Change the STATE file(s) to "REMOVE"
    commands.append('echo REMOVE | tee `ls /export/hda3/*/STATE` > /dev/null')

    commands.extend(uninstall_all_rpms())

    # Cleanup legacy versions and third party RPMS and some other files
    commands.extend(version_independent_misc_cleanup())

    # Remove any lingering chubby config info and version related
    # localbabysitter files. syslogd.conf and klogd.conf belong to
    # OS and cannot be removed.
    commands.append( "rm -f /etc/google/ent*.chubby_cell "
                     "/etc/localbabysitter.d/*-*.conf")

    # Remove zone stuff from named.conf
    commands.extend( version_independent_named_cleanup() )

    if force:
      # Kill any lingering processes belonging to nobody
      commands.append( "/usr/bin/pkill -KILL -u nobody" )
      commands.append( "/usr/bin/pkill -KILL -u nobody" )

  raw_cmd = string.join(commands, '; ')

  for machine in machines:
    print
    print "#################"
    print "Cleaning machine %s" % machine
    print "#################"

    ssh_cmd = remote_cmd(machine, test_cmd)

    if inter_machine:
      cmd = remote_cmd(inter_machine, ssh_cmd, inter_ssh_port)
    else:
      cmd = ssh_cmd

    p = os.popen(cmd, 'r')
    for line in p.readlines():
      if line.find('ACTIVE') == 0:
        sys.stdout.write('Warning: Machine %s in active state\n' % machine)
        if not force:
          sys.exit('Quitting.  Use --force flag to force clean.')

    p.close()

    ssh_cmd = remote_cmd(machine, raw_cmd)

    if inter_machine:
      cmd = remote_cmd(inter_machine, ssh_cmd, inter_ssh_port)
    else:
      cmd = ssh_cmd

    os.system(cmd)
Exemplo n.º 31
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lines = (c / th) + 1

call("split -l %s %s %s " % (str(lines), dat, dat), shell=True)

onlyfiles = [f for f in listdir(".") if isfile(join(".", f))]
splits = []
for f in onlyfiles:
    if f.startswith(dat + "a"):
        splits.append(f)
splits.sort()

commands = []
for n in range(0, len(splits)):
    com = "sat_subfam2fam_multi_support.py %s %s" % (splits[n], pat)
    commands.append(com)

processes = [Popen(cmd, shell=True) for cmd in commands]
for p in processes:
    p.wait()

splits_fam = []

for s in splits:
    splits_fam.append(s + ".fam")

call("cat %s > %s.fam" % (" ".join(splits_fam), dat), shell=True)

print splits

call("rm %s %s" % (" ".join(splits), " ".join(splits_fam)), shell=True)
Exemplo n.º 32
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def FixId(path, library_name):
  id = '@executable_path/../Frameworks/%s' % library_name
  args = ['install_name_tool', '-id', id, path]
  commands.append(args)
 if(bsub_command not in ["Y","N"]):print 'python Processing_sequences.py [sample file list] [commands (comma separated list)] [bsub command: Y/N] [print commands: Y/N] [run commands: Y/N]\n\tError: bsub command must be: Y or N'
 if(bsub_command not in ["Y","N"]):print 'python Processing_sequences.py [sample file list] [commands (comma separated list)] [bsub command: Y/N] [print commands: Y/N] [run commands: Y/N] \n\tError: print command must be: Y or N'
 if(bsub_command not in ["Y","N"]):print 'python Processing_sequences.py [sample file list] [commands (comma separated list)] [bsub command: Y/N] [print commands: Y/N] [run commands: Y/N] \n\tError: run command must be: Y or N'
 idss,dirss='',''
 commands = []
 bsubs = []
 for i in range(0,len(samples)):
   info,sample, gene_types, pair,pair_final, dir,platforms, primers,other=infos[i], samples[i], gene[i], pairs[i],pairs_final[i], dirs[i], platform[i], primer[i],others[i]
   bsub = ''
   id,sources,species=ids[i],source[i],spec[i]
   if(bsub_command=="Y"):
     bsub = " | xargs -i echo qsub  -P immune-rep.prjc -q "+queue+" -b y -o "+wkg_dir+"out_STANDARD_"+id+"  -e "+wkg_dir+"error_log_"+id+" -N job_name \"{}\"  | sh"
   bsubs.append(bsub)
   if( "1" in command):
     command1 = python+" "+wkg_dir+"Read_processing_and_quality.py "+dir+" "+id+" "+sample+" "+gene_types+" "+pair+" "+species+" "+sources +" "+str(200)+" "+primers+" "+platforms+" 1 "+other+" "+reverse_primer_group[i]
     commands.append(command1)
   if( "2" in command):
     command1 = python+" "+wkg_dir+"Read_processing_and_quality.py "+dir+" "+id+" "+sample+" "+gene_types+" "+pair+" "+species+" "+sources +" "+str(200)+" "+primers+" "+platforms+" 2 "+other+" "+reverse_primer_group[i]
     commands.append(command1)
   if( "3" in command):
     command1 = python+" "+wkg_dir+"Read_processing_and_quality.py "+dir+" "+id+" "+sample+" "+gene_types+" "+pair+" "+species+" "+sources +" "+str(200)+" "+primers+" "+platforms+" 3 "+other+" "+reverse_primer_group[i]
     commands.append(command1)
   if( "4" in command):
     command2 = python+" "+wkg_dir+"Generate_repertoire_statistics.py "+dir+"ORIENTATED_SEQUENCES/ANNOTATIONS/ "+id+" "+dir+"ORIENTATED_SEQUENCES/NETWORKS/Fully_reduced_"+id+".fasta "+dir+"ORIENTATED_SEQUENCES/Filtered_ORFs_sequences_all_"+id+".fasta "+gene_types+" "+species+" "+dir+"ORIENTATED_SEQUENCES/NETWORKS/Cluster_identities_"+id+".txt ANNOTATE,STATISTICS "+reverse_primer_group[i]
     commands.append(command2)
   if("ISO1" in command):
     command1 = "python "+wkg_dir+"IsoTyper_1.0.py "+id+" "+id+" "+dir+" "+species+" "+reverse_primer_group[i]
     commands.append(command1)
   if("ISO2" in command):
     command1 = "python "+wkg_dir+"Per_isotype_cluster_analyses.py "+id+" "+id+" "+dir+" "+species+" "+reverse_primer_group[i]
     commands.append(command1)
Exemplo n.º 34
0
    def run_once(self, machines, extra_params, cycles):
        AUTOTEST_DIR = self.job.clientdir

        VIRT_DIR = os.path.join(AUTOTEST_DIR, 'tests', 'virt')
        TEST_DIR = os.path.join(VIRT_DIR, 'tests')
        SHARED_DIR = os.path.join(VIRT_DIR, 'shared')
        VIRT_TYPE = 'qemu'

        bootstrap.create_config_files(TEST_DIR, SHARED_DIR, interactive=False)
        bootstrap.create_subtests_cfg(VIRT_TYPE)

        sys.path.insert(0, VIRT_DIR)

        CONTROL_MAIN_PART = """
testname = "virt"
bindir = os.path.join(job.testdir, testname)
job.install_pkg(testname, 'test', bindir)

qemu_test_dir = os.path.join(os.environ['AUTODIR'],'tests', 'virt')
sys.path.append(qemu_test_dir)
"""
        logging.info("QEMU test running on hosts %s\n", machines)

        _hosts = {}
        for machine in machines:
            _hosts[machine] = Machines(hosts.create_host(machine))

        for host in _hosts.itervalues():
            host.at = autotest_remote.Autotest(host.host)

        cfg_file = os.path.join(VIRT_DIR, "qemu", "cfg",
                                "multi-host-tests.cfg")

        if not os.path.exists(cfg_file):
            raise error.JobError("Config file %s was not found", cfg_file)

        # Get test set (dictionary list) from the configuration file
        parser = cartesian_config.Parser()
        parser.parse_file(cfg_file)
        parser.parse_string(extra_params)
        test_dicts = parser.get_dicts()

        ips = []
        for machine in machines:
            host = _hosts[machine]
            ips.append(host.host.ip)

        logging.info("")
        for i, params in enumerate(test_dicts):
            logging.info("Test    %d:  %s" % (i, params.get("shortname")))
        logging.info("")

        test_dicts = parser.get_dicts()

        test_dicts_ar = [
            x for x in map(lambda x: utils_params.Params(x), test_dicts)
        ]

        if not test_dicts_ar:
            error.TestNAError("Impossible start any test with"
                              "this configuration.")

        for params in test_dicts_ar:

            params['hosts'] = ips

            params['not_preprocess'] = "yes"
            for vm in params.get("vms").split():
                for nic in params.get('nics', "").split():
                    params['mac_%s_%s' % (nic, vm)] = generate_mac_address()

            params['master_images_clone'] = "image1"
            params['kill_vm'] = "yes"

            s_host = _hosts[machines[0]]
            s_host.params = params.object_params("host1")
            s_host.params['clone_master'] = "yes"
            s_host.params['hostid'] = machines[0]

            for host_id, machine in enumerate(machines[1:]):
                host = _hosts[machine]
                host.params = params.object_params("host%s" % (host_id + 2))
                host.params['clone_master'] = "no"
                host.params['hostid'] = machine

            # Report the parameters we've received
            logging.debug("Test parameters:")
            keys = params.keys()
            keys.sort()
            for key in keys:
                logging.debug("    %s = %s", key, params[key])

            for machine in machines:
                host = _hosts[machine]
                host.control = CONTROL_MAIN_PART

            for machine in machines:
                host = _hosts[machine]
                host.control += ("job.run_test('virt', tag='%s', params=%s)" %
                                 (host.params['shortname'], host.params))

            logging.debug('Master control file:\n%s',
                          _hosts[machines[0]].control)
            for machine in machines[1:]:
                host = _hosts[machine]
                logging.debug('Slave control file:\n%s', host.control)

            commands = []

            for machine in machines:
                host = _hosts[machine]
                commands.append(
                    subcommand.subcommand(host.at.run,
                                          [host.control, host.host.hostname]))

            try:
                subcommand.parallel(commands)
            except error.AutoservError, e:
                logging.error(e)
Exemplo n.º 35
0
def FixInstallPath(library_path, library, new_path):
    args = [INSTALL_NAME_TOOL, '-change', library_path, new_path, library]
    commands.append(args)
Exemplo n.º 36
0

def is_exe(fpath):
    return os.path.isfile(fpath) and os.access(fpath, os.X_OK)


bundle_dir = sys.argv[1]
qmake_path = sys.argv[2]

bundle_name = os.path.basename(bundle_dir).split('.')[0]

commands = []

binary_dir = os.path.join(bundle_dir, 'Contents', 'MacOS')
frameworks_dir = os.path.join(bundle_dir, 'Contents', 'Frameworks')
commands.append(['mkdir', '-p', frameworks_dir])
resources_dir = os.path.join(bundle_dir, 'Contents', 'Resources')
commands.append(['mkdir', '-p', resources_dir])
plugins_dir = os.path.join(bundle_dir, 'Contents', 'PlugIns')
binaries = [
    i for i in glob(os.path.join(bundle_dir, 'Contents', 'MacOS', "*"))
    if is_exe(i)
]

qt_version = QueryQMake('QT_VERSION')
print "Using Qt", qt_version

fixed_libraries = []
fixed_frameworks = []

Exemplo n.º 37
0
def CopyFramework(source_dylib):
    parts = source_dylib.split(os.sep)
    print "CopyFramework:", source_dylib
    for i, part in enumerate(parts):
        matchObj = re.match(r'(\w+\.framework)', part)
        if matchObj:
            framework = matchObj.group(1)
            dylib_name = parts[-1]
            source_path = os.path.join('/', *parts[:i + 1])
            dest_path = os.path.join(frameworks_dir, framework)
            dest_dylib_path = os.path.join(frameworks_dir, *parts[i:-1])
            break
    if os.path.exists(dest_path):
        print dest_path, "already exists, skipping copy..."
        return os.path.join(dest_dylib_path, dylib_name)

    args = ['mkdir', '-p', dest_dylib_path]
    commands.append(args)
    args = ['ditto', '--arch=x86_64', source_dylib, dest_dylib_path]
    commands.append(args)
    args = ['chmod', 'u+w', os.path.join(dest_dylib_path, parts[-1])]
    commands.append(args)
    args = ['ln', '-s', '5', os.path.join(dest_path, 'Versions', 'Current')]
    commands.append(args)
    args = [
        'ln', '-s',
        os.path.join('Versions', 'Current', dylib_name),
        os.path.join(dest_path, dylib_name)
    ]
    commands.append(args)
    args = [
        'ln', '-s',
        os.path.join('Versions', 'Current', 'Resources'),
        os.path.join(dest_path, 'Resources')
    ]
    commands.append(args)
    args = [
        'cp', '-r',
        os.path.join(source_path, 'Versions', '5', 'Resources'),
        os.path.join(dest_path, 'Versions', '5')
    ]
    commands.append(args)

    return os.path.join(dest_dylib_path, dylib_name)
Exemplo n.º 38
0
def CopyFramework(path):
    parts = path.split(os.sep)
    print "CopyFramework:", path
    for i, part in enumerate(parts):
        matchObj = re.match(r'(\w+\.framework)', part)
        if matchObj:
            full_path = os.path.join(frameworks_dir, *parts[i:-1])
            framework = matchObj.group(1)
            break
    args = ['mkdir', '-p', full_path]
    commands.append(args)
    args = ['ditto', '--arch=x86_64', path, full_path]
    commands.append(args)
    args = ['chmod', 'u+w', os.path.join(full_path, parts[-1])]
    commands.append(args)
    resources_dir = os.path.join(frameworks_dir, framework, "Resources")

    args = ['mkdir', resources_dir]
    commands.append(args)
    args = ['chmod', 'u+w', resources_dir]
    commands.append(args)

    info_plist = os.path.join(
        os.path.split(path)[0], '..', '..', 'Contents', 'Info.plist')
    if not os.path.exists(info_plist):
        info_plist = os.path.join(
            os.path.split(path)[0], 'Resources', 'Info.plist')
    if os.path.exists(info_plist):
        args = ['cp', '-r', info_plist, resources_dir]
        commands.append(args)
    return os.path.join(full_path, parts[-1])
Exemplo n.º 39
0
def FixInstallPath(library_path, library, new_path):
    args = ['install_name_tool', '-change', library_path, new_path, library]
    commands.append(args)
Exemplo n.º 40
0
class CouldNotFindScriptPluginError(Error):
    pass


if len(sys.argv) < 2:
    print 'Usage: %s <bundle.app>' % sys.argv[0]

bundle_dir = sys.argv[1]
bundle_name = os.path.basename(bundle_dir).split('.')[0]

commands = []
framework_paths = []

binary_dir = os.path.join(bundle_dir, 'Contents', 'MacOS')
frameworks_dir = os.path.join(bundle_dir, 'Contents', 'Frameworks')
commands.append(['mkdir', '-p', frameworks_dir])
vlcplugins_dir = os.path.join(frameworks_dir, 'vlc', 'plugins')
commands.append(['mkdir', '-p', vlcplugins_dir])
snoreplugins_dir = os.path.join(binary_dir, 'libsnore')
commands.append(['mkdir', '-p', snoreplugins_dir])
resources_dir = os.path.join(bundle_dir, 'Contents', 'Resources')
commands.append(['mkdir', '-p', resources_dir])
plugins_dir = os.path.join(bundle_dir, 'Contents', 'qt-plugins')
binary = os.path.join(bundle_dir, 'Contents', 'MacOS', bundle_name)

fixed_libraries = []
fixed_frameworks = []


def GetBrokenLibraries(binary):
    #print "Checking libs for binary: %s" % binary
Exemplo n.º 41
0
	def SambaStartStop(self):
		commands = []
		if not self.my_Samba_run:
			commands.append('/etc/init.d/samba start')
			commands.append('nmbd -D')
			commands.append('smbd -D')
		elif self.my_Samba_run:
			commands.append('/etc/init.d/samba stop')
			commands.append('killall nmbd')
			commands.append('killall smbd')
		self.Console.eBatch(commands, self.StartStopCallback, debug=True)
Exemplo n.º 42
0
def CopyFramework(src_binary):
    while os.path.islink(src_binary):
        src_binary = os.path.realpath(src_binary)

    m = re.match(r'(.*/([^/]+)\.framework)/Versions/([^/]+)/.*', src_binary)
    if not m:
        raise CouldNotParseFrameworkNameError(src_binary)

    src_base = m.group(1)
    name = m.group(2)
    version = m.group(3)

    LOGGER.info('Copying framework %s version %s', name, version)

    dest_base = os.path.join(frameworks_dir, '%s.framework' % name)
    dest_dir = os.path.join(dest_base, 'Versions', version)
    dest_binary = os.path.join(dest_dir, name)

    commands.append(['mkdir', '-p', dest_dir])
    commands.append(['cp', src_binary, dest_binary])

    # Copy special files from various places:
    #   QtCore has Resources/qt_menu.nib (copy to app's Resources)
    #   Sparkle has Resources/*
    #   Qt* have Resources/Info.plist
    resources_src = os.path.join(src_base, 'Resources')
    menu_nib = os.path.join(resources_src, 'qt_menu.nib')
    if os.path.exists(menu_nib):
        LOGGER.info("Copying qt_menu.nib '%s'", menu_nib)
        commands.append(['cp', '-r', menu_nib, resources_dir])
    elif os.path.exists(resources_src):
        LOGGER.info("Copying resources dir '%s'", resources_src)
        commands.append(['cp', '-r', resources_src, dest_dir])

    info_plist = os.path.join(src_base, 'Contents', 'Info.plist')
    if os.path.exists(info_plist):
        LOGGER.info("Copying special file '%s'", info_plist)
        resources_dest = os.path.join(dest_dir, 'Resources')
        commands.append(['mkdir', resources_dest])
        commands.append(['cp', '-r', info_plist, resources_dest])

    # Create symlinks in the Framework to make it look like
    # https://developer.apple.com/library/mac/documentation/MacOSX/Conceptual/BPFrameworks/Concepts/FrameworkAnatomy.html
    commands.append([
        'ln', '-sf',
        'Versions/Current/%s' % name,
        os.path.join(dest_base, name)
    ])
    commands.append([
        'ln', '-sf', 'Versions/Current/Resources',
        os.path.join(dest_base, 'Resources')
    ])
    commands.append(
        ['ln', '-sf', version,
         os.path.join(dest_base, 'Versions/Current')])

    return dest_binary
Exemplo n.º 43
0
def FixId(path, library_name):
    id = '@executable_path/../Frameworks/%s' % library_name
    args = [INSTALL_NAME_TOOL, '-id', id, path]
    commands.append(args)
Exemplo n.º 44
0
def FixInstallPath(library_path, library, new_path):
  args = ['install_name_tool', '-change', library_path, new_path, library]
  commands.append(args)
Exemplo n.º 45
0
def CopyFramework(path):
    parts = path.split(os.sep)
    for i, part in enumerate(parts):
        if re.match(r'\w+\.framework', part):
            full_path = os.path.join(frameworks_dir, *parts[i:-1])
            framework_name = part.split(".framework")[0]
            break

    if full_path in framework_paths:
        return os.path.join(full_path, parts[-1])

    framework_paths.append(full_path)

    args = ['mkdir', '-p', full_path]
    commands.append(args)
    args = ['ditto', '--arch=i386', '--arch=x86_64', path, full_path]
    commands.append(args)
    args = ['chmod', 'u+w', os.path.join(full_path, parts[-1])]
    commands.append(args)

    menu_nib = os.path.join(os.path.split(path)[0], 'Resources', 'qt_menu.nib')
    if os.path.exists(menu_nib):
        args = ['cp', '-rf', menu_nib, resources_dir]
        commands.append(args)

    # Fix framework structure for signing
    path_base_dir = os.path.join(os.path.split(path)[0], '..', '..')
    path_versions_dir = os.path.join(path_base_dir, 'Versions')

    if not os.path.exists(os.path.join(full_path, 'Versions', 'Current')):
        framework_base_dir = os.path.join(full_path, '..', '..')
        framework_versions_dir = os.path.join(framework_base_dir, 'Versions')

        versionParts = glob.glob(path_versions_dir + '/*')[0].split(os.sep)
        args = [
            'ln', '-s', versionParts[-1], framework_versions_dir + '/Current'
        ]
        commands.append(args)

        args = [
            'ln', '-s', 'Versions/Current/' + framework_name,
            framework_base_dir + '/' + framework_name
        ]
        commands.append(args)

        args = [
            'ln', '-s', 'Versions/Current/Resources',
            framework_base_dir + '/Resources'
        ]
        commands.append(args)

    # Copy Contents/Info.plist to Resources/Info.plist if Resources/Info.plist does not exist
    # If Contents/Info.plist doesn't exist either, error out. If we actually see this, we can copy QtCore's Info.plist
    info_plist_in_resources = os.path.join(
        os.path.split(path)[0], '..', '..', 'Resources', 'Info.plist')
    info_plist_in_contents = os.path.join(
        os.path.split(path)[0], '..', '..', 'Contents', 'Info.plist')
    framework_resources_dir = os.path.join(framework_versions_dir,
                                           versionParts[-1], 'Resources')
    args = ['mkdir', '-p', framework_resources_dir]
    commands.append(args)
    if os.path.exists(info_plist_in_contents):
        args = ['cp', '-rf', info_plist_in_contents, framework_resources_dir]
        commands.append(args)
        args = [
            'chmod', '+rw',
            os.path.join(framework_resources_dir, 'Info.plist')
        ]
        commands.append(args)
    elif not os.path.exists(info_plist_in_resources):
        print "%s: Framework does not contain an Info.plist file in Contents/ folder." % (
            path)
        sys.exit(-1)

    return os.path.join(full_path, parts[-1])