#!/usr/bin/env python3
# -*- coding: utf-8 -*-
from common.checks import Checks
checks = Checks()
from datetime import datetime as time
from distutils.dir_util import copy_tree
from common.runsubprocess import RunSubprocess as run
import atexit
import ntpath
import shutil
import os
import re
import subprocess
link = path = ""
result_lines = []
OUT = open("./DieterichLab_archive_disk_3-linksearch.COPIED.out", "w+")
class CopyGroupCDfolder():
def __init_(self):
pass
def _runcommand(self, command, test=True):
""""""
if test:
print("RUNNING:", command)
_result = subprocess.check_output(command).decode("utf-8")
else:
__author__ = "Mike Rightmire" __copyright__ = "Universitäts Klinikum Heidelberg, Section of Bioinformatics and Systems Cardiology" __license__ = "Not licensed for private use." __version__ = "0.9.0.0" __maintainer__ = "Mike Rightmire" __email__ = "*****@*****.**" __status__ = "Development" from argparse import ArgumentParser # ConfigHandler disabled until py3 update # from common.confighandler import ConfigHandler # loghandler disabled until bugfix in Jessie access to self.socket.send(msg) # from common.loghandler import log from common.checks import Checks checks = Checks() _delim = checks.directory_deliminator() from common.loghandler import log from inspect import stack from pathlib import Path from shutil import copyfile import tempfile import abc import grp import inspect import ntpath import os import pwd ### FILE TEMPLATES ##########################################################
def __new__(
cls,
app_name='UNCHANGED', # DO NOT CHANGE FROM 'UNCHANGED'
logfile='UNCHANGED', # DO NOT CHANGE FROM 'UNCHANGED'
log_level='UNCHANGED', # DO NOT CHANGE FROM 'UNCHANGED'
screendump='UNCHANGED', # DO NOT CHANGE FROM 'UNCHANGED'
format='UNCHANGED', # DO NOT CHANGE FROM 'UNCHANGED'
create_paths='UNCHANGED', # DO NOT CHANGE FROM 'UNCHANGED'
migrate='UNCHANGED', # DO NOT CHANGE FROM 'UNCHANGED'
instantiate=True # DO NOT CHANGE FROM True
):
"""
This is a singleton class.
The __new__ method is called prior to instantiation with __init__.
If there's already an instance of the class, the existing object is
returned. If it doesn't exist, a new object is instantiated with
the __init__.
"""
#============= FOR DEBUGGING ===========================================
# try: #333
# print cls.instance,'============'
# print datetime.datetime.now().time()
# print cls.instance.create_time
# except Exception as e: #333
# print 'No instance: ', str(e) #333
#=======================================================================
# __init__ is called no matter what, so...
# If there is NOT an instance, just create an instance
# This WILL run __init__
# Do NOT set self.__exists here, since if _-exists == True, __init__ is
# cancelled (it must still run at the first instantiation)
if not hasattr(cls, 'instance'):
if instantiate:
# Create an instance
cls.instance = super(SetLogger, cls).__new__(cls)
cls.instance.checks = Checks()
# SET INSTANCE DEFUALTS HERE =============================================
# These must be set or errors will arise.
cls.instance._APP_NAME = 'loghandler'
cls.instance._LOGFILE = False
cls.instance._LOG_LEVEL = 10
cls.instance._SCREENDUMP = False
cls.instance._FORMAT = '%(asctime)s - %(name)s - %(levelname)s - %(message)s'
cls.instance._CREATE_PATHS = True
cls.instance.instantiate = True
cls.instance._MIGRATE = True
cls.instance._FORMATTER = logging.Formatter(
cls.instance.format)
cls.instance._changed_flag = False
cls.instance._changed_flag_message = ''
return cls.instance
else:
return None
# Else if an instance does exist, set a flag since
# __init__is called, but flag halts completion (just returns)
else:
cls.instance.__exists = True
return cls.instance