def find_java_tree(platform):
java = "java/" + platform
revision = execute("git rev-parse HEAD:" + java)
if platform == "macosx-java3d":
return [revision.replace("\n", ""), platform]
tree = execute("git --git-dir=" + java + "/.git ls-tree " + revision)
return [tree[12:52] + ":jre", platform + "/" + tree[53:].replace("\n", "") + "/jre"]
def find_java_tree(platform):
java = 'java/' + platform
revision = execute('git rev-parse HEAD:' + java)
if platform == 'macosx-java3d':
return [revision.replace('\n', ''), platform]
tree = execute('git --git-dir=' + java + '/.git ls-tree ' + revision)
return [tree[12:52] + ':jre',
platform + '/' + tree[53:].replace('\n', '') + '/jre']
def find_java_tree(platform):
java = 'java/' + platform
revision = execute('git rev-parse HEAD:' + java)
if platform == 'macosx-java3d':
return [revision.replace('\n', ''), platform]
tree = execute('git --git-dir=' + java + '/.git ls-tree ' + revision)
return [
tree[12:52] + ':jre',
platform + '/' + tree[53:].replace('\n', '') + '/jre'
]
root = 'root-x86_64-pc-linux/'
cxx = root + 'bin/x86_64-pc-mingw32-g++'
strip = root + 'bin/x86_64-pc-mingw32-strip'
windres = root + 'bin/x86_64-pc-mingw32-windres'
target = 'precompiled/fiji-win64.exe'
if not os.path.exists(cxx):
url = 'http://heanet.dl.sourceforge.net/sourceforge/mingw-w64/'
file = 'mingw-w64-bin_x86-64-linux_20080721.tar.bz2'
filename = urllib.urlretrieve(url + file)[0]
if filename is None:
print "You need to install the mingw64 cross compiler into", cxx
sys.exit(1)
os.makedirs(root)
execute('tar -C ' + root + ' -xjvf ' + filename)
if not os.path.exists(cxx):
print "You need to install the mingw64 cross compiler into", cxx
sys.exit(1)
res = open('tmp.rc', 'w')
res.write('101 ICON images/fiji.ico')
res.close()
print(windres + ' -o tmp.o -i tmp.rc')
print execute(windres + ' -o tmp.o -i tmp.rc')
quoted_args = ' '.join(sys.argv[2:]).replace("'", '"').replace('"', '\"')
print(cxx + ' -o ' + target + ' ' + quoted_args + ' fiji.cxx tmp.o')
print execute(cxx + ' -o ' + target + ' ' + quoted_args + ' fiji.cxx tmp.o')
print(strip + ' ' + target)
print execute(strip + ' ' + target)
def add_plugin(plugin):
if plugin.endswith('.java'):
target = 'plugins/' + plugin[0:len(plugin) - 5] + '.class'
elif plugin in third_parties:
target = 'plugins/' + plugin
else:
if plugin.endswith('/'):
plugin = plugin[0:len(plugin) - 1]
remove_class_files('src-plugins/' + plugin)
target = 'plugins/' + plugin + '.jar'
ignore_line = '/' + target + "\n"
if not ignore_line in ignored:
f = open('.gitignore', 'a')
f.write(ignore_line)
f.close()
ignored[target] = -1
execute('git add .gitignore')
plugin_line = "\t" + target + " \\\n"
global last_plugin_line, last_jar_plugin_line, faked_plugins
global last_3rd_party_plugin_line
if not plugin_line in faked_plugins:
if plugin.endswith('.java'):
if last_jar_plugin_line > last_plugin_line:
last_jar_plugin_line += 1
if last_3rd_party_plugin_line > last_plugin_line:
last_3rd_party_plugin_line += 1
last_plugin_line += 1
fakefile.insert(last_plugin_line, plugin_line)
elif plugin in third_parties:
if last_plugin_line > last_3rd_party_plugin_line:
last_plugin_line += 1
if last_jar_plugin_line > last_3rd_party_plugin_line:
last_jar_plugin_line += 1
last_3rd_party_plugin_line += 1
fakefile.insert(last_3rd_party_plugin_line, plugin_line)
else:
if last_plugin_line > last_jar_plugin_line:
last_plugin_line += 1
if last_3rd_party_plugin_line > last_jar_plugin_line:
last_3rd_party_plugin_line += 1
last_jar_plugin_line += 1
fakefile.insert(last_jar_plugin_line, plugin_line)
f = open ('Fakefile', 'w')
f.write(''.join(fakefile))
f.close()
execute('git add Fakefile')
if plugin in third_parties:
file = 'staged-plugins/' + plugin
third_party = 'third-party '
else:
file = 'src-plugins/' + plugin
third_party = ''
if execute('git ls-files ' + file) == '':
action = 'Add'
else:
action = 'Modify'
execute('git add ' + file)
f = open('.msg', 'w')
if plugin.endswith('.java'):
plugin = plugin[0:len(plugin) - 5]
elif plugin.endswith('.jar'):
plugin = plugin[0:len(plugin) - 4]
configfile = 'staged-plugins/' + plugin + '.config'
if os.path.exists(configfile):
execute('git add ' + configfile)
name = plugin.replace('/', '>').replace('_', ' ')
f.write(action + ' the ' + third_party + 'plugin "' + name + '"')
f.close()
execute('git commit -s -F .msg')
os.remove('.msg')
#!/bin/sh
''''exec "$(dirname "$0")"/../fiji --jython "$0" "$@" # (call again with fiji)'''
import sys
from compat import execute
if len(sys.argv) < 3:
print 'Usage: ', sys.argv[0], ' <archive> <folder>'
exit(1)
archive = sys.argv[1]
folder = sys.argv[2]
print 'Making', archive, 'from', folder
if not archive.endswith('.7z'):
archive = archive + '.7z'
execute('7z a -m0=lzma -mx=9 -md=64M ' + archive + ' ' + folder)
execute('chmod a+r ' + archive)
def get_disk_id(dmg):
match = re.match(".*/dev/([^ ]*)[^/]*Apple_HFS.*", execute("hdid " + dmg), re.MULTILINE | re.DOTALL)
if match != None:
return match.group(1)
return None
import sys
from compat import execute
if len(sys.argv) < 3:
print 'Usage:', sys.argv[0], '<source> <launcher>...'
sys.exit(1)
source = sys.argv[1]
count = 0
for file in sys.argv[2:]:
# Find out the edge commits (edges being the commits changing the
# launcher, but having no offspring with the same property)
edges = ''
while True:
edge = execute('git rev-list -1 HEAD ' + edges + ' -- ' + file)
if edge == '':
break
edges = edges + ' ^' + edge
if edges == '':
print file, 'has not been committed yet'
count += 1
continue
# Now verify that that the source has not changed since any of those
# edges
if execute('git rev-list HEAD ' + edges + ' -- ' + source) != '':
print file, 'is not up-to-date.'
count += 1
space = prereq.find(' ')
if space < 0:
space = len(prereq)
star = prereq.find('*', 0, space)
if star < 0:
star = space
slash = prereq.rfind('/', 0, star)
if slash > 0:
prereq = prereq[:slash]
timestamp = str(timestamp)
from datetime import datetime, timedelta
date = datetime.strptime(timestamp[6:8] + '.' + timestamp[4:6] + '.' + timestamp[:4] + ' ' + timestamp[8:10] + ':' + timestamp[10:12] + ':' + timestamp[12:14] + ' +0000', '%d.%m.%Y %H:%M:%S')
startdate = date - timedelta(0, 2 * 60 * 60)
enddate = date + timedelta(0, 2 * 60 * 60)
date = date.strftime('%d.%m.%Y.%H:%M:%S')
startdate = startdate.strftime('%d.%m.%Y.%H:%M:%S')
enddate = enddate.strftime('%d.%m.%Y.%H:%M:%S')
from compat import execute
cmd = 'git log --since=' + startdate + ' --until=' + enddate + ' ' + prereq
print 'Running:', cmd
result = execute(cmd)
if result == '':
cmd = 'git log -1 --until=' + startdate + ' ' + prereq
print 'Running again:', cmd
result = execute(cmd)
print '\nFound:'
print result
import sys
from compat import execute
if len(sys.argv) < 3:
print 'Usage:', sys.argv[0], '<source> <launcher>...'
sys.exit(1)
source = sys.argv[1]
count = 0
for file in sys.argv[2:]:
# Find out the edge commits (edges being the commits changing the
# launcher, but having no offspring with the same property)
edges = ''
while True:
edge = execute('git rev-list -1 HEAD ' + edges + ' -- ' + file)
if edge == '':
break
edges = edges + ' ^' + edge
if edges == '':
print file, 'has not been committed yet'
count += 1
continue
# Now verify that that the source has not changed since any of those
# edges
if execute('git rev-list HEAD ' + edges + ' -- ' + source) != '':
print file, 'is not up-to-date.'
count += 1
else:
print 'Need a target, as the submodule', submodule, \
'was not added yet'
sys.exit(1)
elif len(sys.argv) == 3:
if not submodule in has_rule.keys() or \
sys.argv[2] == has_rule[submodule]:
target = sys.argv[2]
else:
print 'Submodule', submodule, 'already has target', \
has_rule[submodule], '(you gave', sys.argv[2] + ')'
sys.exit(1)
# push submodule
url = execute('git --git-dir=' + submodule + '.git config remote.origin.url')
if url.startswith('git://'):
print 'The origin\'s URL of', submodule, \
'must be a pushable (i.e. not start with git://)'
sys.exit(1)
print 'Making sure that the submodule is pushed:', \
execute('git --git-dir=' + submodule + '.git push origin HEAD')
# add to .gitignore if not yet there
ignore_line = '/' + target + "\n"
if not ignore_line in ignored:
f = open('.gitignore', 'a')
f.write(ignore_line)
f.close()
ignored[target] = -1
star = prereq.find('*', 0, space)
if star < 0:
star = space
slash = prereq.rfind('/', 0, star)
if slash > 0:
prereq = prereq[:slash]
timestamp = str(timestamp)
from datetime import datetime, timedelta
date = datetime.strptime(
timestamp[6:8] + '.' + timestamp[4:6] + '.' + timestamp[:4] + ' ' +
timestamp[8:10] + ':' + timestamp[10:12] + ':' + timestamp[12:14] +
' +0000', '%d.%m.%Y %H:%M:%S')
startdate = date - timedelta(0, 2 * 60 * 60)
enddate = date + timedelta(0, 2 * 60 * 60)
date = date.strftime('%d.%m.%Y.%H:%M:%S')
startdate = startdate.strftime('%d.%m.%Y.%H:%M:%S')
enddate = enddate.strftime('%d.%m.%Y.%H:%M:%S')
from compat import execute
cmd = 'git log --since=' + startdate + ' --until=' + enddate + ' ' + prereq
print 'Running:', cmd
result = execute(cmd)
if result == '':
cmd = 'git log -1 --until=' + startdate + ' ' + prereq
print 'Running again:', cmd
result = execute(cmd)
print '\nFound:'
print result
print 'Copying platform-specific files for', platform, \
'(host platform=' + host_platform + ')'
if platform == 'macosx':
macos='Fiji.app/Contents/MacOS/'
os.makedirs(macos)
shutil.copy('Contents/MacOS/ImageJ-macosx', macos + 'ImageJ-macosx')
shutil.copy('Contents/MacOS/ImageJ-tiger', macos)
chmod(macos + 'ImageJ-macosx', 0755)
chmod(macos + 'ImageJ-tiger', 0755)
shutil.copy('Contents/Info.plist', 'Fiji.app/Contents/')
images='Fiji.app/Contents/Resources/'
os.makedirs(images)
shutil.copy('Contents/Resources/Fiji.icns', images)
else:
if platform.startswith('win'):
exe = ".exe"
else:
exe = ''
binary = 'ImageJ-' + platform + exe
shutil.copy(binary, 'Fiji.app/' + binary)
chmod('Fiji.app/' + binary, 0755)
make_app()
execute('bin/download-launchers.sh snapshot')
if platform == 'all':
for p in all_platforms:
copy_platform_specific_files(p)
else:
copy_platform_specific_files(platform)
def find_java_tree(platform):
if platform == 'linux64':
platform = 'linux-amd64'
java = 'origin/java/' + platform
version = execute('git ls-tree --name-only ' + java).replace('\n', '')
return java + ':' + version + '/jre'
else:
print 'Need a target, as the submodule', submodule, \
'was not added yet'
sys.exit(1)
elif len(sys.argv) == 3:
if not submodule in has_rule.keys() or \
sys.argv[2] == has_rule[submodule]:
target = sys.argv[2]
else:
print 'Submodule', submodule, 'already has target', \
has_rule[submodule], '(you gave', sys.argv[2] + ')'
sys.exit(1)
# push submodule
url = execute('git --git-dir=' + submodule + '.git config remote.origin.url')
if url.startswith('git://'):
print 'The origin\'s URL of', submodule, \
'must be a pushable (i.e. not start with git://)'
sys.exit(1)
print 'Making sure that the submodule has no uncommitted changes'
git_base='git --git-dir=' + submodule + '.git --work-tree=' + submodule
if os.system(git_base + ' update-index --refresh') != 0 or \
os.system(git_base + ' diff-files --quiet') != 0 or \
os.system(git_base + ' diff-index --cached --quiet HEAD') != 0:
print 'Submodule ' + submodule + ' contains uncommitted changes'
sys.exit(1)
print 'Making sure that the submodule is pushed:', \
execute('git --git-dir=' + submodule + '.git push origin HEAD')
# add to .gitignore if not yet there
#!/bin/sh
''''exec "$(dirname "$0")"/ImageJ.sh --jython "$0" "$@" # (call again with fiji)'''
import sys
from compat import execute
if len(sys.argv) < 3:
print 'Usage: ', sys.argv[0], ' <tarfile> <folder>'
exit(1)
tarfile = sys.argv[1]
folder = sys.argv[2]
print 'Making', tarfile, 'from', folder
if tarfile.endswith('.bz2'):
packer = 'bzip2 -9 -f'
tarfile = tarfile[:len(tarfile) - 4]
elif tarfile.endswith('.gz'):
packer = 'gzip -9 -f'
tarfile = tarfile[:len(tarfile) - 3]
else:
packer = ''
execute('tar cvf ' + tarfile + ' ' + folder)
if packer != '':
execute(packer + ' ' + tarfile)
def get_folder(dmg):
match = re.match('.*Apple_HFS\s*([^\n]*).*', execute('hdid ' + dmg),
re.MULTILINE | re.DOTALL)
if match != None:
return match.group(1)
return None
def eject(dmg):
disk_id = get_disk_id(dmg)
print "disk_id: ", disk_id
hdiutil('eject ' + disk_id)
# create temporary disk image and format, ejecting when done
hdiutil('create ' + dmg + ' -srcfolder ' + app \
+ ' -fs HFS+ -format UDRW -volname Fiji -ov')
folder = get_folder(dmg)
print "folder: ", folder
os.system('cp resources/install-fiji.jpg "' + folder + '"/.background.jpg')
symlink('/Applications', folder + '/Applications')
execute('perl bin/generate-finder-dsstore.perl')
# to edit the background image/icon positions: raw_input('Press Enter...')
eject(dmg)
os.rename(dmg, dmg + '.tmp')
hdiutil('convert ' + dmg + '.tmp -format UDZO -o ' + dmg)
eject(dmg)
os.remove(dmg + '.tmp')
return None
def get_folder(dmg):
match = re.match(".*Apple_HFS\s*([^\n]*).*", execute("hdid " + dmg), re.MULTILINE | re.DOTALL)
if match != None:
return match.group(1)
return None
def eject(dmg):
disk_id = get_disk_id(dmg)
print "disk_id: ", disk_id
hdiutil("eject " + disk_id)
# create temporary disk image and format, ejecting when done
hdiutil("create " + dmg + " -srcfolder " + app + " -fs HFS+ -format UDRW -volname Fiji -ov")
folder = get_folder(dmg)
print "folder: ", folder
os.system('cp resources/install-fiji.jpg "' + folder + '"/.background.jpg')
symlink("/Applications", folder + "/Applications")
execute("perl bin/generate-finder-dsstore.perl")
# to edit the background image/icon positions: raw_input('Press Enter...')
eject(dmg)
os.rename(dmg, dmg + ".tmp")
hdiutil("convert " + dmg + ".tmp -format UDZO -o " + dmg)
eject(dmg)
os.remove(dmg + ".tmp")
def get_disk_id(dmg):
match = re.match('.*/dev/([^ ]*)[^/]*Apple_HFS.*', execute('hdid ' + dmg),
re.MULTILINE | re.DOTALL)
if match != None:
return match.group(1)
return None
def get_folder(dmg):
match = re.match(".*Apple_HFS\s*([^\n]*).*", execute("hdid " + dmg), re.MULTILINE | re.DOTALL)
if match != None:
return match.group(1)
return None
def get_folder(dmg):
match = re.match('.*Apple_HFS\s*([^\n]*).*', execute('hdid ' + dmg),
re.MULTILINE | re.DOTALL)
if match != None:
return match.group(1)
return None
'(host platform=' + host_platform + ')'
if platform == 'macosx':
macos = 'Fiji.app/Contents/MacOS/'
os.makedirs(macos)
shutil.copy('Contents/MacOS/ImageJ-macosx', macos + 'ImageJ-macosx')
shutil.copy('Contents/MacOS/ImageJ-tiger', macos)
chmod(macos + 'ImageJ-macosx', 0755)
chmod(macos + 'ImageJ-tiger', 0755)
shutil.copy('Contents/Info.plist', 'Fiji.app/Contents/')
images = 'Fiji.app/Contents/Resources/'
os.makedirs(images)
shutil.copy('Contents/Resources/Fiji.icns', images)
else:
if platform.startswith('win'):
exe = ".exe"
else:
exe = ''
binary = 'ImageJ-' + platform + exe
shutil.copy(binary, 'Fiji.app/' + binary)
chmod('Fiji.app/' + binary, 0755)
make_app()
execute('bin/download-launchers.sh snapshot')
if platform == 'all':
for p in all_platforms:
copy_platform_specific_files(p)
else:
copy_platform_specific_files(platform)
re.MULTILINE | re.DOTALL)
if match != None:
return match.group(1)
return None
def get_folder(dmg):
match=re.match('.*Apple_HFS\s*([^\n]*).*', execute('hdid ' + dmg),
re.MULTILINE | re.DOTALL)
if match != None:
return match.group(1)
return None
def eject(dmg):
disk_id=get_disk_id(dmg)
print "disk_id: ", disk_id
hdiutil('eject ' + disk_id)
# create temporary disk image and format, ejecting when done
hdiutil('create ' + dmg + ' -srcfolder ' + app \
+ ' -fs HFS+ -format UDRW -volname Fiji -ov')
folder=get_folder(dmg)
print "folder: ", folder
os.system('cp resources/install-fiji.jpg "' + folder + '"/.background.jpg')
symlink('/Applications', folder + '/Applications')
execute('perl bin/generate-finder-dsstore.perl')
# to edit the background image/icon positions: raw_input('Press Enter...')
eject(dmg)
os.rename(dmg, dmg + '.tmp')
hdiutil('convert ' + dmg + '.tmp -format UDZO -o ' + dmg)
eject(dmg)
os.remove(dmg + '.tmp')
verbose = False
print 'Making', zipfile, 'from', folder
if os.name == 'java':
from java.io import FileOutputStream
from java.util.zip import ZipOutputStream, ZipEntry
def add_folder(zip, folder):
for file in os.listdir(folder):
file = folder + '/' + file
if os.path.isdir(file):
add_folder(zip, file)
elif os.path.isfile(file):
if verbose:
print file
entry = ZipEntry(file)
zip.putNextEntry(entry)
f = open(file, "rb")
zip.write(f.read())
f.close()
zip.closeEntry()
output = FileOutputStream(zipfile)
zip = ZipOutputStream(output)
add_folder(zip, folder)
zip.close()
else:
execute('zip -9r ' + zipfile + ' ' + folder)
verbose = False
print 'Making', zipfile, 'from', folder
if os.name == 'java':
from java.io import FileOutputStream
from java.util.zip import ZipOutputStream, ZipEntry
def add_folder(zip, folder):
for file in os.listdir(folder):
file = folder + '/' + file
if os.path.isdir(file):
add_folder(zip, file)
elif os.path.isfile(file):
if verbose:
print file
entry = ZipEntry(file)
zip.putNextEntry(entry)
f = open(file, "rb")
zip.write(f.read())
f.close()
zip.closeEntry()
output = FileOutputStream(zipfile)
zip = ZipOutputStream(output)
add_folder(zip, folder)
zip.close()
else:
execute('zip -9r ' + zipfile + ' ' + folder)
#!/bin/sh
''''exec "$(dirname "$0")"/../ImageJ --jython "$0" "$@" # (call again with fiji)'''
import sys
from compat import execute
if len(sys.argv) < 3:
print 'Usage: ', sys.argv[0], ' <archive> <folder>'
exit(1)
archive = sys.argv[1]
folder = sys.argv[2]
print 'Making', archive, 'from', folder
if not archive.endswith('.7z'):
archive = archive + '.7z'
execute('7z a -m0=lzma -mx=9 -md=64M ' + archive + ' ' + folder)
execute('chmod a+r ' + archive)
else:
print "Unsupported platform:", sys.argv[1]
sys.exit(1)
cc = prefix + 'gcc'
strip = prefix + 'strip'
windres = prefix + 'windres'
target = 'precompiled/fiji-' + platform + exe
source = 'fiji.c'
if platform.startswith('win'):
res = open('tmp.rc', 'w')
res.write('101 ICON images/fiji.ico')
res.close()
if platform == 'win32':
m32 = '--target=pe-i386'
else:
m32 = ''
command = windres + ' ' + m32 + ' -o tmp.o -i tmp.rc'
print(command)
print execute(command)
source += " tmp.o"
quoted_args = ' '.join(cflags).replace("'", '"').replace('"', '\"')
command = cc + ' -o ' + target + ' ' + quoted_args + ' ' + source
print(command)
print execute(command)
command = strip + ' ' + target
print(command)
print execute(command)
#!/bin/sh
''''exec "$(dirname "$0")"/../fiji --jython "$0" "$@" # (call again with fiji)'''
import sys
from compat import execute
if len(sys.argv) < 3:
print 'Usage: ', sys.argv[0], ' <tarfile> <folder>'
exit(1)
tarfile = sys.argv[1]
folder = sys.argv[2]
print 'Making', tarfile, 'from', folder
if tarfile.endswith('.bz2'):
packer = 'bzip2 -9 -f'
tarfile = tarfile[:len(tarfile) - 4]
elif tarfile.endswith('.gz'):
packer = 'gzip -9 -f'
tarfile = tarfile[:len(tarfile) - 3]
else:
packer = ''
execute('tar cvf ' + tarfile + ' ' + folder)
if packer != '':
execute(packer + ' ' + tarfile)
if sys.argv[1] != 'win64':
print "Unsupported platform:", sys.argv[1]
sys.exit(1)
root = 'root-x86_64-pc-linux/'
cc = root + 'bin/x86_64-w64-mingw32-gcc'
strip = root + 'bin/x86_64-w64-mingw32-strip'
windres = root + 'bin/x86_64-w64-mingw32-windres'
target = 'precompiled/fiji-win64.exe'
if not os.path.exists(cc):
url = 'http://dfn.dl.sourceforge.net/project/mingw-w64/'
url += 'Toolchains%20targetting%20Win64/Automated%20Builds/'
file = 'mingw-w64-bin_x86_64-linux_20090920.tar.bz2'
execute('curl -o ' + file + ' ' + url + file )
filename = file
if filename is None:
print "You need to install the mingw64 cross compiler into", cc
sys.exit(1)
os.makedirs(root)
execute('tar -C ' + root + ' -xjvf ' + filename)
if not os.path.exists(cc):
print "You need to install the mingw64 cross compiler into", cc
sys.exit(1)
res = open('tmp.rc', 'w')
res.write('101 ICON images/fiji.ico')
res.close()
print(windres + ' -o tmp.o -i tmp.rc')
print execute(windres + ' -o tmp.o -i tmp.rc')