def rm_lock(locks, verbose=True):
from ..install import rm_rf
for path in locks:
if verbose:
print("removing: %s" % path)
rm_rf(path)
def rm_pkgs(args):
# TODO: This doesn't handle packages that have hard links to files within
# themselves, like bin/python3.3 and bin/python3.3m in the Python package
from os.path import join, isdir
from os import lstat, walk, listdir
from conda.install import rm_rf
pkgs_dir = config.pkgs_dirs[0]
print('Cache location: %s' % pkgs_dir)
rmlist = []
pkgs = [i for i in listdir(pkgs_dir) if isdir(join(pkgs_dir, i)) and
# Only include actual packages
isdir(join(pkgs_dir, i, 'info'))]
for pkg in pkgs:
breakit = False
for root, dir, files in walk(join(pkgs_dir, pkg)):
if breakit:
break
for fn in files:
try:
stat = lstat(join(root, fn))
except OSError as e:
print(e)
continue
if stat.st_nlink > 1:
# print('%s is installed: %s' % (pkg, join(root, fn)))
breakit = True
break
else:
rmlist.append(pkg)
if not rmlist:
print("There are no unused packages to remove")
sys.exit(0)
print("Will remove the following packages:")
print()
totalsize = 0
maxlen = len(max(rmlist, key=lambda x: len(str(x))))
fmt = "%-40s %10s"
for pkg in rmlist:
pkgsize = 0
for root, dir, files in walk(join(pkgs_dir, pkg)):
for fn in files:
# We don't have to worry about counting things twice: by
# definition these files all have a link count of 1!
size = lstat(join(root, fn)).st_size
totalsize += size
pkgsize += size
print(fmt % (pkg, human_bytes(pkgsize)))
print('-' * (maxlen + 2 + 10))
print(fmt % ('Total:', human_bytes(totalsize)))
print()
common.confirm_yn(args)
for pkg in rmlist:
print("removing %s" % pkg)
rm_rf(join(pkgs_dir, pkg))
def make_recipe(package, version, noarch_python=False):
if version is None:
release = client.package_releases(package)
if len(release) > 0:
version = release[0]
else:
raise RuntimeError("Empty releases for %s" % package)
depends = get_all_dependencies(package, version)
dirname = package.lower() + "-" + version
if os.path.isdir(dirname):
rm_rf(dirname)
os.mkdir(dirname)
direc = os.path.abspath(dirname)
build = 'pip install %s==%s\n' % (package, version)
# write build.sh file and bld.bat file
filenames = ['build.sh', 'bld.bat']
for name in filenames:
with open(os.path.join(direc, name), 'w') as fid:
fid.write(build)
indent = '\n - '
d = {}
d['packagename'] = package
d['version'] = version
if depends:
d['depends'] = indent.join([''] + depends)
else:
d['depends'] = ''
data = client.release_data(package, version)
if not data:
raise RuntimeError("Cannot get data for %s-%s" % (package, version))
license_classifier = "License :: OSI Approved ::"
if 'classifiers' in data:
licenses = [classifier.lstrip(license_classifier) for classifier in
data['classifiers'] if classifier.startswith(license_classifier)]
else:
licenses = []
if not licenses:
license = data.get('license', 'UNKNOWN') or 'UNKNOWN'
else:
license = ' or '.join(licenses)
d['homeurl'] = data['home_page']
d['license'] = license
d['summary'] = repr(data['summary'])
if noarch_python:
d['build_comment'] = ''
d['noarch_python_comment'] = ''
else:
d['build_comment'] = '# '
d['noarch_python_comment'] = '# '
with open(os.path.join(direc, 'meta.yaml'), 'w') as fid:
fid.write(meta_template.format(**d))
return direc, depends
def explicit(urls, prefix, verbose=True):
import conda.fetch as fetch
from conda.utils import md5_file
dists = []
for url in urls:
if url == '@EXPLICIT':
continue
print("Fetching: %s" % url)
channel_url, fn = url.rsplit('/', 1)
dists.append(fn[:-8])
index = fetch.fetch_index((channel_url + '/',))
info = index[fn]
pkg_path = join(config.pkgs_dirs[0], fn)
if isfile(pkg_path):
try:
if md5_file(pkg_path) != index[fn]['md5']:
install.rm_rf(pkg_path)
fetch.fetch_pkg(info)
except KeyError:
sys.stderr.write('Warning: cannot lookup MD5 of: %s' % fn)
else:
fetch.fetch_pkg(info)
force_extract_and_link(dists, prefix, verbose=verbose)
def test_raises_final_exception_if_it_cant_remove(self):
with self.generate_directory_mocks(on_win=True) as mocks:
mocks['rmtree'].side_effect = OSError
mocks['rename'].side_effect = OSError
some_path = self.generate_random_path
with self.assertRaises(OSError):
install.rm_rf(some_path, trash=False)
def get_pkginfo(package, filename, pypiurl, md5, python_version):
# Unfortunately, two important pieces of metadata are only stored in
# the package itself: the dependencies, and the entry points (if the
# package uses distribute). Our strategy is to download the package
# and "fake" distribute/setuptools's setup() function to get this
# information from setup.py. If this sounds evil, keep in mind that
# distribute itself already works by monkeypatching distutils.
tempdir = mkdtemp('conda_skeleton_' + filename)
if not isdir(SRC_CACHE):
makedirs(SRC_CACHE)
try:
# Download it to the build source cache. That way, you have
# it.
download_path = join(SRC_CACHE, filename)
if not isfile(download_path) or \
hashsum_file(download_path, 'md5') != md5:
download(pypiurl, join(SRC_CACHE, filename))
else:
print("Using cached download")
print("Unpacking %s..." % package)
unpack(join(SRC_CACHE, filename), tempdir)
print("done")
print("working in %s" % tempdir)
src_dir = get_dir(tempdir)
# TODO: find args parameters needed by run_setuppy
run_setuppy(src_dir, tempdir, python_version)
with open(join(tempdir, 'pkginfo.yaml')) as fn:
pkginfo = yaml.load(fn)
finally:
rm_rf(tempdir)
return pkginfo
def test_raises_final_exception_if_it_cant_remove(self):
with self.generate_directory_mocks(on_win=True) as mocks:
mocks['rmtree'].side_effect = OSError
mocks['rename'].side_effect = OSError
some_path = self.generate_random_path
with self.assertRaises(OSError):
install.rm_rf(some_path, trash=False)
def tearDown(self):
rm_rf("environment.yml")
if env_is_created(test_env_name_1):
run_env_command(Commands.ENV_REMOVE, test_env_name_1)
if env_is_created(test_env_name_42):
run_env_command(Commands.ENV_REMOVE, test_env_name_42)
def rm_index_cache():
from os.path import join
from conda.config import pkgs_dirs
from conda.install import rm_rf
rm_rf(join(pkgs_dirs[0], 'cache'))
def build_package(package, version=None):
if conda_package_exists(package):
return 0
if ' ' in package:
package, version = depend.split(' ')
try:
directory = build_recipe(package, version=version)
dependencies = convert_recipe(directory, package)
except RuntimeError:
directory, dependencies = make_recipe(package, version)
try:
print("package = %s" % package)
print(" dependences = %s" % dependencies)
# Dependencies will be either package_name or
# package_name version_number
# Only == dependency specs get version numbers
# All else are just handled without a version spec
for depend in dependencies:
build_package(depend)
args = build_template.format(directory).split()
print("Building conda package for {0}".format(package.lower()))
result = subprocess.Popen(args).wait()
if result == 0 and binstar_upload:
m = MetaData(directory)
handle_binstar_upload(build.bldpkg_path(m))
finally:
rm_rf(directory)
return result
def test_multi_channel_explicit(self):
"""
When try to import from txt
every package should come from same channel
"""
with make_temp_env("python=3") as prefix:
assert exists(join(prefix, PYTHON_BINARY))
assert_package_is_installed(prefix, 'python-3')
run_command(Commands.INSTALL, prefix, "six", "-c", "conda-forge")
assert_package_is_installed(prefix, "six")
output, error = run_command(Commands.LIST, prefix, "--explicit")
self.assertIn("conda-forge", output)
try:
with tempfile.NamedTemporaryFile(mode="w", suffix="txt", delete=False) as env_txt:
env_txt.write(output)
env_txt.close()
prefix2 = make_temp_prefix()
run_command(Commands.CREATE, prefix2, "--file " + env_txt.name)
assert_package_is_installed(prefix2, "python")
assert_package_is_installed(prefix2, "six")
output2, _ = run_command(Commands.LIST, prefix2, "--explicit")
self.assertEqual(output, output2)
finally:
rm_rf(env_txt.name)
def make_recipe(package, version, noarch_python=False):
if version is None:
release = client.package_releases(package)
if len(release) > 0:
version = release[0]
else:
raise RuntimeError("Empty releases for %s" % package)
depends = get_all_dependencies(package, version)
dirname = package.lower() + "-" + version
if os.path.isdir(dirname):
rm_rf(dirname)
os.mkdir(dirname)
direc = os.path.abspath(dirname)
build = 'pip install %s==%s\n' % (package, version)
# write build.sh file and bld.bat file
filenames = ['build.sh', 'bld.bat']
for name in filenames:
with open(os.path.join(direc, name), 'w') as fid:
fid.write(build)
indent = '\n - '
d = {}
d['packagename'] = package
d['version'] = version
if depends:
d['depends'] = indent.join([''] + depends)
else:
d['depends'] = ''
data = client.release_data(package, version)
if not data:
raise RuntimeError("Cannot get data for %s-%s" % (package, version))
license_classifier = "License :: OSI Approved ::"
if 'classifiers' in data:
licenses = [classifier.lstrip(license_classifier) for classifier in
data['classifiers'] if classifier.startswith(license_classifier)]
else:
licenses = []
if not licenses:
license = data.get('license', 'UNKNOWN') or 'UNKNOWN'
else:
license = ' or '.join(licenses)
d['homeurl'] = data['home_page']
d['license'] = license
d['summary'] = repr(data['summary'])
if noarch_python:
d['build_comment'] = ''
d['noarch_python_comment'] = ''
else:
d['build_comment'] = '# '
d['noarch_python_comment'] = '# '
with open(os.path.join(direc, 'meta.yaml'), 'w') as fid:
fid.write(meta_template.format(**d))
return direc, depends
def test_retries_six_times_to_ensure_it_cant_really_remove(self):
with self.generate_directory_mocks() as mocks:
mocks['rmtree'].side_effect = OSError
some_path = self.generate_random_path
with self.assertRaises(OSError):
install.rm_rf(some_path)
self.assertEqual(6, mocks['rmtree'].call_count)
def rm_pkgs(args, pkgs_dir, rmlist, warnings, totalsize, pkgsizes,
verbose=True):
if verbose:
print('Cache location: %s' % pkgs_dir)
for fn, exception in warnings:
print(exception)
if not rmlist:
if verbose:
print("There are no unused packages to remove")
return
if verbose:
print("Will remove the following packages:")
print()
maxlen = len(max(rmlist, key=lambda x: len(str(x))))
fmt = "%-40s %10s"
for pkg, pkgsize in zip(rmlist, pkgsizes):
print(fmt % (pkg, human_bytes(pkgsize)))
print('-' * (maxlen + 2 + 10))
print(fmt % ('Total:', human_bytes(totalsize)))
print()
if not args.json:
common.confirm_yn(args)
if args.json and args.dry_run:
return
for pkg in rmlist:
if verbose:
print("removing %s" % pkg)
rm_rf(join(pkgs_dir, pkg))
def build_package(package, version=None, noarch_python=False):
if ' ' in package:
package, version = package.split(' ')
try:
directory = build_recipe(package, version=version)
dependencies = convert_recipe(directory, package,
noarch_python=noarch_python)
except RuntimeError:
directory, dependencies = make_recipe(package, version,
noarch_python=noarch_python)
return_code = 0
try:
print("package = %s" % package)
print(" dependencies = %s" % dependencies)
# Dependencies will be either package_name or
# package_name version_number
# Only == dependency specs get version numbers
# All else are just handled without a version spec
for depend in dependencies:
build_package(depend)
args = build_template.format(directory).split()
print("Building conda package for {0}".format(package.lower()))
try:
utils.execute(args, check_exit_code=True)
except subprocess.CalledProcessError as exc:
return_code = exc.return_code
else:
m = MetaData(directory)
handle_binstar_upload(build.bldpkg_path(m))
finally:
rm_rf(directory)
return return_code
def tearDown(self):
rm_rf("environment.yml")
run_env_command(Commands.ENV_REMOVE, test_env_name_1)
run_env_command(Commands.ENV_REMOVE, test_env_name_42)
run_env_command(Commands.ENV_REMOVE, test_env_name_pip)
for env_nb in range(1, 6):
run_env_command(Commands.ENV_REMOVE, "envjson-{0}".format(env_nb))
def rm_pkgs(args, pkgs_dir, rmlist, warnings, totalsize, pkgsizes,
verbose=True):
from conda.install import rm_rf
if verbose:
print('Cache location: %s' % pkgs_dir)
for fn, exception in warnings:
print(exception)
if not rmlist:
if verbose:
print("There are no unused packages to remove")
return
if verbose:
print("Will remove the following packages:")
print()
maxlen = len(max(rmlist, key=lambda x: len(str(x))))
fmt = "%-40s %10s"
for pkg, pkgsize in zip(rmlist, pkgsizes):
print(fmt % (pkg, human_bytes(pkgsize)))
print('-' * (maxlen + 2 + 10))
print(fmt % ('Total:', human_bytes(totalsize)))
print()
if not args.json:
common.confirm_yn(args)
if args.json and args.dry_run:
return
for pkg in rmlist:
if verbose:
print("removing %s" % pkg)
rm_rf(join(pkgs_dir, pkg))
def explicit(urls, prefix, verbose=True):
import conda.fetch as fetch
from conda.utils import md5_file
dists = []
for url in urls:
if url == '@EXPLICIT':
continue
print("Fetching: %s" % url)
m = url_pat.match(url)
if m is None:
sys.exit("Error: Could not parse: %s" % url)
fn = m.group('fn')
dists.append(fn[:-8])
index = fetch.fetch_index((m.group('url') + '/',))
try:
info = index[fn]
except KeyError:
sys.exit("Error: no package '%s' in index" % fn)
if m.group('md5') and m.group('md5') != info['md5']:
sys.exit("Error: MD5 in explicit files does not match index")
pkg_path = join(config.pkgs_dirs[0], fn)
if isfile(pkg_path):
try:
if md5_file(pkg_path) != info['md5']:
install.rm_rf(pkg_path)
fetch.fetch_pkg(info)
except KeyError:
sys.stderr.write('Warning: cannot lookup MD5 of: %s' % fn)
else:
fetch.fetch_pkg(info)
force_extract_and_link(dists, prefix, verbose=verbose)
def test_retries_six_times_to_ensure_it_cant_really_remove(self):
with self.generate_directory_mocks() as mocks:
mocks['rmtree'].side_effect = OSError
some_path = self.generate_random_path
with self.assertRaises(OSError):
install.rm_rf(some_path)
self.assertEqual(6, mocks['rmtree'].call_count)
def rm_index_cache():
from os.path import join
from conda.config import pkgs_dirs
from conda.install import rm_rf
rm_rf(join(pkgs_dirs[0], 'cache'))
def test_calls_rmtree_and_rename_on_win(self):
with self.generate_directory_mocks(on_win=True) as mocks:
some_path = self.generate_random_path
install.rm_rf(some_path)
assert mocks['rename'].call_count == 1
assert mocks['rmtree'].call_count == 1
assert mocks['rename'].call_args[0][1] == mocks['rmtree'].call_args[0][0]
def get_outdated(output_dir, cran_metadata):
to_update = []
for recipe in listdir(output_dir):
if not recipe.startswith('r-') or not isdir(recipe):
continue
recipe_name = recipe[2:]
if recipe_name not in cran_metadata:
print("Skipping %s, not found on CRAN" % recipe)
continue
up_to_date = version_compare(
join(output_dir, recipe),
cran_metadata[recipe_name]['Version'].replace('-', '_'))
if up_to_date:
print("%s is up-to-date." % recipe)
continue
print("Updating %s" % recipe)
to_update.append(recipe_name)
rm_rf(join(output_dir, recipe))
return to_update
def test_multi_channel_explicit(self):
"""
When try to import from txt
every package should come from same channel
"""
with make_temp_env("python=3") as prefix:
assert exists(join(prefix, PYTHON_BINARY))
assert_package_is_installed(prefix, 'python-3')
run_command(Commands.INSTALL, prefix, "six", "-c", "conda-forge")
assert_package_is_installed(prefix, "six")
output, error = run_command(Commands.LIST, prefix, "--explicit")
self.assertIn("conda-forge", output)
try:
with tempfile.NamedTemporaryFile(mode="w", suffix="txt", delete=False) as env_txt:
env_txt.write(output)
env_txt.close()
prefix2 = make_temp_prefix()
run_command(Commands.CREATE, prefix2, "--file " + env_txt.name)
assert_package_is_installed(prefix2, "python")
assert_package_is_installed(prefix2, "six")
output2, _ = run_command(Commands.LIST, prefix2, "--explicit")
self.assertEqual(output, output2)
finally:
rm_rf(env_txt.name)
def build_package(package, version=None):
if conda_package_exists(package):
return 0
if ' ' in package:
package, version = package.split(' ')
try:
directory = build_recipe(package, version=version)
dependencies = convert_recipe(directory, package)
except RuntimeError:
directory, dependencies = make_recipe(package, version)
try:
print("package = %s" % package)
print(" dependencies = %s" % dependencies)
# Dependencies will be either package_name or
# package_name version_number
# Only == dependency specs get version numbers
# All else are just handled without a version spec
for depend in dependencies:
build_package(depend)
args = build_template.format(directory).split()
print("Building conda package for {0}".format(package.lower()))
result = subprocess.Popen(args).wait()
if result == 0 and binstar_upload:
m = MetaData(directory)
handle_binstar_upload(build.bldpkg_path(m))
finally:
rm_rf(directory)
return result
def get_pkginfo(package, filename, pypiurl, md5, python_version):
# Unfortunately, two important pieces of metadata are only stored in
# the package itself: the dependencies, and the entry points (if the
# package uses distribute). Our strategy is to download the package
# and "fake" distribute/setuptools's setup() function to get this
# information from setup.py. If this sounds evil, keep in mind that
# distribute itself already works by monkeypatching distutils.
import yaml
tempdir = mkdtemp('conda_skeleton_' + filename)
if not isdir(SRC_CACHE):
makedirs(SRC_CACHE)
try:
# Download it to the build source cache. That way, you have
# it.
download_path = join(SRC_CACHE, filename)
if not isfile(download_path) or \
hashsum_file(download_path, 'md5') != md5:
download(pypiurl, join(SRC_CACHE, filename))
else:
print("Using cached download")
print("Unpacking %s..." % package)
unpack(join(SRC_CACHE, filename), tempdir)
print("done")
print("working in %s" % tempdir)
src_dir = get_dir(tempdir)
# TODO: find args parameters needed by run_setuppy
run_setuppy(src_dir, tempdir, python_version)
with open(join(tempdir, 'pkginfo.yaml')) as fn:
pkginfo = yaml.load(fn)
finally:
rm_rf(tempdir)
return pkginfo
def test_calls_rmtree_at_least_once_on_isdir_true(self):
with self.generate_directory_mocks() as mocks:
some_path = self.generate_random_path
install.rm_rf(some_path)
mocks['rmtree'].assert_called_with(some_path,
onerror=warn_failed_remove,
ignore_errors=False)
def run_setuppy(src_dir, temp_dir, args):
'''
Patch distutils and then run setup.py in a subprocess.
:param src_dir: Directory containing the source code
:type src_dir: str
:param temp_dir: Temporary directory for doing for storing pkginfo.yaml
:type temp_dir: str
'''
# Do everything in the build env in case the setup.py install goes
# haywire.
# TODO: Try with another version of Python if this one fails. Some
# packages are Python 2 or Python 3 only.
create_env(build_prefix,
['python %s*' % args.python_version, 'pyyaml', 'setuptools'],
clear_cache=False)
stdlib_dir = join(
build_prefix, 'Lib' if sys.platform == 'win32' else 'lib/python%s' %
args.python_version)
patch = join(temp_dir, 'pypi-distutils.patch')
with open(patch, 'w') as f:
f.write(DISTUTILS_PATCH.format(temp_dir.replace('\\', '\\\\')))
if exists(join(stdlib_dir, 'distutils', 'core.py-copy')):
rm_rf(join(stdlib_dir, 'distutils', 'core.py'))
copy2(join(stdlib_dir, 'distutils', 'core.py-copy'),
join(stdlib_dir, 'distutils', 'core.py'))
# Avoid race conditions. Invalidate the cache.
if PY3:
rm_rf(
join(stdlib_dir, 'distutils', '__pycache__',
'core.cpython-%s%s.pyc' % sys.version_info[:2]))
rm_rf(
join(stdlib_dir, 'distutils', '__pycache__',
'core.cpython-%s%s.pyo' % sys.version_info[:2]))
else:
rm_rf(join(stdlib_dir, 'distutils', 'core.pyc'))
rm_rf(join(stdlib_dir, 'distutils', 'core.pyo'))
else:
copy2(join(stdlib_dir, 'distutils', 'core.py'),
join(stdlib_dir, 'distutils', 'core.py-copy'))
apply_patch(join(stdlib_dir, 'distutils'), patch)
# Save PYTHONPATH for later
env = os.environ.copy()
if 'PYTHONPATH' in env:
env[str('PYTHONPATH')] = str(src_dir + ':' + env['PYTHONPATH'])
else:
env[str('PYTHONPATH')] = str(src_dir)
cwd = getcwd()
chdir(src_dir)
args = [build_python, 'setup.py', 'install']
try:
subprocess.check_call(args, env=env)
except subprocess.CalledProcessError:
print('$PYTHONPATH = %s' % env['PYTHONPATH'])
sys.exit('Error: command failed: %s' % ' '.join(args))
finally:
chdir(cwd)
def run_setuppy(src_dir, temp_dir, python_version, setup_options):
'''
Patch distutils and then run setup.py in a subprocess.
:param src_dir: Directory containing the source code
:type src_dir: str
:param temp_dir: Temporary directory for doing for storing pkginfo.yaml
:type temp_dir: str
'''
# Do everything in the build env in case the setup.py install goes
# haywire.
# TODO: Try with another version of Python if this one fails. Some
# packages are Python 2 or Python 3 only.
create_env(config.build_prefix, ['python %s*' % python_version,
'pyyaml', 'yaml',
'setuptools', 'numpy'], clear_cache=False)
stdlib_dir = join(config.build_prefix,
'Lib' if sys.platform == 'win32'
else 'lib/python%s' % python_version)
patch = join(temp_dir, 'pypi-distutils.patch')
with open(patch, 'w') as f:
f.write(DISTUTILS_PATCH.format(temp_dir.replace('\\', '\\\\')))
if exists(join(stdlib_dir, 'distutils', 'core.py-copy')):
rm_rf(join(stdlib_dir, 'distutils', 'core.py'))
copy2(join(stdlib_dir, 'distutils', 'core.py-copy'),
join(stdlib_dir, 'distutils', 'core.py'))
# Avoid race conditions. Invalidate the cache.
if PY3:
rm_rf(join(stdlib_dir, 'distutils', '__pycache__',
'core.cpython-%s%s.pyc' % sys.version_info[:2]))
rm_rf(join(stdlib_dir, 'distutils', '__pycache__',
'core.cpython-%s%s.pyo' % sys.version_info[:2]))
else:
rm_rf(join(stdlib_dir, 'distutils', 'core.pyc'))
rm_rf(join(stdlib_dir, 'distutils', 'core.pyo'))
else:
copy2(join(stdlib_dir, 'distutils', 'core.py'), join(stdlib_dir,
'distutils', 'core.py-copy'))
apply_patch(join(stdlib_dir, 'distutils'), patch)
# Save PYTHONPATH for later
env = os.environ.copy()
if 'PYTHONPATH' in env:
env[str('PYTHONPATH')] = str(src_dir + ':' + env['PYTHONPATH'])
else:
env[str('PYTHONPATH')] = str(src_dir)
cwd = getcwd()
chdir(src_dir)
cmdargs = [config.build_python, 'setup.py', 'install']
cmdargs.extend(setup_options)
try:
subprocess.check_call(cmdargs, env=env)
except subprocess.CalledProcessError:
print('$PYTHONPATH = %s' % env['PYTHONPATH'])
sys.exit('Error: command failed: %s' % ' '.join(cmdargs))
finally:
chdir(cwd)
def execute(args, parser):
import sys
import conda.plan as plan
from conda.api import get_index
from conda.cli import pscheck
from conda.install import rm_rf, linked
if not (args.all or args.package_names):
sys.exit('Error: no package names supplied,\n'
' try "conda remove -h" for more details')
prefix = common.get_prefix(args)
common.check_write('remove', prefix)
index = None
if args.features:
channel_urls = args.channel or ()
common.ensure_override_channels_requires_channel(args)
index = get_index(channel_urls=channel_urls,
prepend=not args.override_channels)
features = set(args.package_names)
actions = plan.remove_features_actions(prefix, index, features)
elif args.all:
if plan.is_root_prefix(prefix):
sys.exit('Error: cannot remove root environment,\n'
' add -n NAME or -p PREFIX option')
actions = {plan.PREFIX: prefix,
plan.UNLINK: sorted(linked(prefix))}
else:
specs = common.specs_from_args(args.package_names)
if (plan.is_root_prefix(prefix) and
common.names_in_specs(common.root_no_rm, specs)):
sys.exit('Error: cannot remove %s from root environment' %
', '.join(common.root_no_rm))
actions = plan.remove_actions(prefix, specs)
if plan.nothing_to_do(actions):
if args.all:
rm_rf(prefix)
return
sys.exit('Error: no packages found to remove from '
'environment: %s' % prefix)
print()
print("Package plan for package removal in environment %s:" % prefix)
plan.display_actions(actions)
if not pscheck.main(args):
common.confirm_yn(args)
plan.execute_actions(actions, index, verbose=not args.quiet)
if args.all:
rm_rf(prefix)
def test_dispatch_to_subprocess_on_error_on_windows(self):
with self.generate_directory_mocks(on_win=True) as mocks:
mocks['rmtree'].side_effect = OSError
some_path = generate_random_path()
install.rm_rf(some_path)
check_call = mocks['check_call']
expected_arg = ['cmd', '/c', 'rd', '/s', '/q', some_path]
check_call.assert_called_with(expected_arg)
def test_retries_as_many_as_max_retries_plus_one(self):
max_retries = random.randint(7, 10)
with self.generate_directory_mocks() as mocks:
mocks['rmtree'].side_effect = OSError
some_path = self.generate_random_path
with self.assertRaises(OSError):
install.rm_rf(some_path, max_retries=max_retries)
self.assertEqual(max_retries + 1, mocks['rmtree'].call_count)
def test_calls_rmtree_and_rename_on_win(self):
with self.generate_directory_mocks(on_win=True) as mocks:
some_path = self.generate_random_path
install.rm_rf(some_path)
assert mocks['rename'].call_count == 1
assert mocks['rmtree'].call_count == 1
assert mocks['rename'].call_args[0][1] == mocks['rmtree'].call_args[0][
0]
def test_calls_rmtree_and_rename_on_unix(self):
with self.generate_directory_mocks() as mocks:
mocks['rmtree'].side_effect = OSError
some_path = self.generate_random_path
install.rm_rf(some_path)
assert mocks['rename'].call_count == 1
assert mocks['rmtree'].call_count > 1
assert dirname(mocks['rename'].call_args[0][1]) == mocks['rmtree'].call_args[0][0]
def test_dispatch_to_subprocess_on_error_on_windows(self):
with self.generate_directory_mocks(on_win=True) as mocks:
mocks['rmtree'].side_effect = OSError
some_path = generate_random_path()
install.rm_rf(some_path)
check_call = mocks['check_call']
expected_arg = ['cmd', '/c', 'rd', '/s', '/q', some_path]
check_call.assert_called_with(expected_arg)
def test_retries_as_many_as_max_retries_plus_one(self):
max_retries = random.randint(7, 10)
with self.generate_directory_mocks() as mocks:
mocks['rmtree'].side_effect = OSError
some_path = self.generate_random_path
with self.assertRaises(OSError):
install.rm_rf(some_path, max_retries=max_retries)
self.assertEqual(max_retries + 1, mocks['rmtree'].call_count)
def test_pauses_for_same_number_of_seconds_as_max_retries(self):
with self.generate_directory_mocks() as mocks:
mocks["rmtree"].side_effect = OSError
max_retries = random.randint(1, 10)
with self.assertRaises(OSError):
install.rm_rf(self.generate_random_path, max_retries=max_retries, trash=False)
expected = [mock.call(i) for i in range(max_retries)]
mocks["sleep"].assert_has_calls(expected)
def execute(args, parser):
import sys
import conda.plan as plan
from conda.api import get_index
from conda.cli import pscheck
from conda.install import rm_rf, linked
if not (args.all or args.package_names):
sys.exit('Error: no package names supplied,\n'
' try "conda remove -h" for more details')
prefix = common.get_prefix(args)
common.check_write('remove', prefix)
index = None
if args.features:
common.ensure_override_channels_requires_channel(args)
channel_urls = args.channel or ()
index = get_index(channel_urls=channel_urls,
prepend=not args.override_channels)
features = set(args.package_names)
actions = plan.remove_features_actions(prefix, index, features)
elif args.all:
if plan.is_root_prefix(prefix):
sys.exit('Error: cannot remove root environment,\n'
' add -n NAME or -p PREFIX option')
actions = {plan.PREFIX: prefix, plan.UNLINK: sorted(linked(prefix))}
else:
specs = common.specs_from_args(args.package_names)
if (plan.is_root_prefix(prefix)
and common.names_in_specs(common.root_no_rm, specs)):
sys.exit('Error: cannot remove %s from root environment' %
', '.join(common.root_no_rm))
actions = plan.remove_actions(prefix, specs)
if plan.nothing_to_do(actions):
if args.all:
rm_rf(prefix)
return
sys.exit('Error: no packages found to remove from '
'environment: %s' % prefix)
print()
print("Package plan for package removal in environment %s:" % prefix)
plan.display_actions(actions)
if not pscheck.main(args):
common.confirm_yn(args)
plan.execute_actions(actions, index, verbose=not args.quiet)
if args.all:
rm_rf(prefix)
def check_install(packages, platform=None, channel_urls=(), prepend=True, minimal_hint=False):
try:
prefix = tempfile.mkdtemp('conda')
specs = common.specs_from_args(packages)
index = get_index(channel_urls=channel_urls, prepend=prepend,
platform=platform)
plan.install_actions(prefix, index, specs, pinned=False, minimal_hint=minimal_hint)
finally:
ci.rm_rf(prefix)
def test_calls_rmtree_and_rename_on_unix(self):
with self.generate_directory_mocks() as mocks:
mocks['rmtree'].side_effect = OSError
some_path = self.generate_random_path
install.rm_rf(some_path)
assert mocks['rename'].call_count == 1
assert mocks['rmtree'].call_count > 1
assert dirname(
mocks['rename'].call_args[0][1]) == mocks['rmtree'].call_args[0][0]
def check_install(packages, platform=None, channel_urls=(), prepend=True):
try:
prefix = tempfile.mkdtemp('conda')
specs = common.specs_from_args(packages)
index = get_index(channel_urls=channel_urls, prepend=prepend,
platform=platform)
plan.install_actions(prefix, index, specs)
finally:
ci.rm_rf(prefix)
def test_calls_rename_if_unlink_fails(self):
with self.generate_mocks() as mocks:
mocks["unlink"].side_effect = OSError(errno.ENOENT, "blah")
some_path = self.generate_random_path
install.rm_rf(some_path)
assert mocks["unlink"].call_count > 1
assert mocks["rename"].call_count == 1
rename_args = mocks["rename"].call_args[0]
assert rename_args[0] == mocks["unlink"].call_args_list[0][0][0]
assert dirname(rename_args[1]) in (ca[0][0] for ca in mocks["unlink"].call_args_list)
def test_calls_rename_if_unlink_fails(self):
with self.generate_mocks() as mocks:
mocks['unlink'].side_effect = OSError
some_path = self.generate_random_path
install.rm_rf(some_path)
assert mocks['unlink'].call_count > 1
assert mocks['rename'].call_count == 1
rename_args = mocks['rename'].call_args[0]
assert rename_args[0] == mocks['unlink'].call_args_list[0][0][0]
assert dirname(rename_args[1]) == mocks['unlink'].call_args_list[1][0][0]
def test_continues_calling_until_max_tries_on_called_process_errors_on_windows(self):
max_retries = random.randint(6, 10)
with self.generate_directory_mocks(on_win=True) as mocks:
mocks['rmtree'].side_effect = OSError
mocks['check_call'].side_effect = subprocess.CalledProcessError(1, "cmd")
with self.assertRaises(OSError):
install.rm_rf(generate_random_path(), max_retries=max_retries)
self.assertEqual((max_retries * 2) + 1, mocks['rmtree'].call_count)
self.assertEqual(max_retries, mocks['check_call'].call_count)
def test_pauses_for_same_number_of_seconds_as_max_retries(self):
with self.generate_directory_mocks() as mocks:
mocks['rmtree'].side_effect = OSError
max_retries = random.randint(1, 10)
with self.assertRaises(OSError):
install.rm_rf(self.generate_random_path,
max_retries=max_retries)
expected = [mock.call(i) for i in range(max_retries)]
mocks['sleep'].assert_has_calls(expected)
def check_install(packages, platform=None, channel_urls=(), prepend=True, minimal_hint=False):
try:
prefix = tempfile.mkdtemp('conda')
specs = common.specs_from_args(packages)
index = get_index(channel_urls=channel_urls, prepend=prepend,
platform=platform)
actions = plan.install_actions(prefix, index, specs, pinned=False, minimal_hint=minimal_hint)
plan.display_actions(actions, index)
return actions
finally:
ci.rm_rf(prefix)
def test_calls_until_max_tries_on_called_process_errors_on_windows(self):
max_retries = random.randint(6, 10)
with self.generate_directory_mocks(on_win=True) as mocks:
mocks['rmtree'].side_effect = OSError
mocks['check_call'].side_effect = subprocess.CalledProcessError(
1, "cmd")
with self.assertRaises(OSError):
install.rm_rf(generate_random_path(), max_retries=max_retries)
self.assertEqual((max_retries * 2) + 1, mocks['rmtree'].call_count)
self.assertEqual(max_retries, mocks['check_call'].call_count)
def test_calls_rename_if_unlink_fails(self):
with self.generate_mocks() as mocks:
mocks['unlink'].side_effect = OSError(errno.ENOENT, "blah")
some_path = self.generate_random_path
install.rm_rf(some_path)
assert mocks['unlink'].call_count > 1
assert mocks['rename'].call_count == 1
rename_args = mocks['rename'].call_args[0]
assert rename_args[0] == mocks['unlink'].call_args_list[0][0][0]
assert dirname(
rename_args[1]) in (ca[0][0]
for ca in mocks['unlink'].call_args_list)
def test_tries_extra_kwarg_on_windows(self):
with self.generate_directory_mocks(on_win=True) as mocks:
random_path = self.generate_random_path
mocks['rmtree'].side_effect = [OSError, None]
install.rm_rf(random_path)
expected_call_list = [
mock.call(random_path, ignore_errors=False, onerror=warn_failed_remove),
mock.call(random_path, onerror=install._remove_readonly)
]
mocks['rmtree'].assert_has_calls(expected_call_list)
self.assertEqual(2, mocks['rmtree'].call_count)
def test_tries_extra_kwarg_on_windows(self):
with self.generate_directory_mocks(on_win=True) as mocks:
random_path = self.generate_random_path
mocks['rmtree'].side_effect = [OSError, None]
install.rm_rf(random_path)
expected_call_list = [
mock.call(random_path),
mock.call(random_path, onerror=install._remove_readonly)
]
mocks['rmtree'].assert_has_calls(expected_call_list)
self.assertEqual(2, mocks['rmtree'].call_count)
def render_recipe(recipe_path, no_download_source, verbose, dirty=False):
if not isdir(config.croot):
os.makedirs(config.croot)
with Locked(config.croot):
if not dirty:
if sys.platform == 'win32':
if isdir(source.WORK_DIR):
move_to_trash(source.WORK_DIR, '')
else:
rm_rf(source.WORK_DIR)
assert not isdir(source.WORK_DIR), (
"Failed to clean work directory. Please close open"
" programs/terminals/folders and try again.")
arg = recipe_path
# Don't use byte literals for paths in Python 2
if not PY3:
arg = arg.decode(getpreferredencoding() or 'utf-8')
if isfile(arg):
if arg.endswith(('.tar', '.tar.gz', '.tgz', '.tar.bz2')):
recipe_dir = tempfile.mkdtemp()
t = tarfile.open(arg, 'r:*')
t.extractall(path=recipe_dir)
t.close()
need_cleanup = True
else:
print("Ignoring non-recipe: %s" % arg)
return
else:
recipe_dir = abspath(arg)
need_cleanup = False
if not isdir(recipe_dir):
sys.exit("Error: no such directory: %s" % recipe_dir)
try:
m = MetaData(recipe_dir)
except exceptions.YamlParsingError as e:
sys.stderr.write(e.error_msg())
sys.exit(1)
m, need_download, need_reparse_in_env = parse_or_try_download(
m,
no_download_source=no_download_source,
verbose=verbose,
dirty=dirty)
if need_cleanup:
shutil.rmtree(recipe_dir)
return m, need_download, need_reparse_in_env
def run_setuppy(src_dir, temp_dir, python_version):
"""
Patch distutils and then run setup.py in a subprocess.
:param src_dir: Directory containing the source code
:type src_dir: str
:param temp_dir: Temporary directory for doing for storing pkginfo.yaml
:type temp_dir: str
"""
# Do everything in the build env in case the setup.py install goes
# haywire.
# TODO: Try with another version of Python if this one fails. Some
# packages are Python 2 or Python 3 only.
create_env(config.build_prefix, ["python %s*" % python_version, "pyyaml", "setuptools", "numpy"], clear_cache=False)
stdlib_dir = join(config.build_prefix, "Lib" if sys.platform == "win32" else "lib/python%s" % python_version)
patch = join(temp_dir, "pypi-distutils.patch")
with open(patch, "w") as f:
f.write(DISTUTILS_PATCH.format(temp_dir.replace("\\", "\\\\")))
if exists(join(stdlib_dir, "distutils", "core.py-copy")):
rm_rf(join(stdlib_dir, "distutils", "core.py"))
copy2(join(stdlib_dir, "distutils", "core.py-copy"), join(stdlib_dir, "distutils", "core.py"))
# Avoid race conditions. Invalidate the cache.
if PY3:
rm_rf(join(stdlib_dir, "distutils", "__pycache__", "core.cpython-%s%s.pyc" % sys.version_info[:2]))
rm_rf(join(stdlib_dir, "distutils", "__pycache__", "core.cpython-%s%s.pyo" % sys.version_info[:2]))
else:
rm_rf(join(stdlib_dir, "distutils", "core.pyc"))
rm_rf(join(stdlib_dir, "distutils", "core.pyo"))
else:
copy2(join(stdlib_dir, "distutils", "core.py"), join(stdlib_dir, "distutils", "core.py-copy"))
apply_patch(join(stdlib_dir, "distutils"), patch)
# Save PYTHONPATH for later
env = os.environ.copy()
if "PYTHONPATH" in env:
env[str("PYTHONPATH")] = str(src_dir + ":" + env["PYTHONPATH"])
else:
env[str("PYTHONPATH")] = str(src_dir)
cwd = getcwd()
chdir(src_dir)
cmdargs = [config.build_python, "setup.py", "install"]
try:
subprocess.check_call(cmdargs, env=env)
except subprocess.CalledProcessError:
print("$PYTHONPATH = %s" % env["PYTHONPATH"])
sys.exit("Error: command failed: %s" % " ".join(cmdargs))
finally:
chdir(cwd)
def test_logs_messages_generated_for_each_retry(self):
with self.generate_directory_mocks() as mocks:
random_path = self.generate_random_path
mocks["rmtree"].side_effect = OSError(random_path)
max_retries = random.randint(1, 10)
with self.assertRaises(OSError):
install.rm_rf(random_path, max_retries=max_retries, trash=False)
log_template = "\n".join(
["Unable to delete %s" % random_path, "%s" % OSError(random_path), "Retrying after %d seconds..."]
)
expected_call_list = [mock.call(log_template % i) for i in range(max_retries)]
mocks["log"].debug.assert_has_calls(expected_call_list)
def ensure_linked_actions(dists, prefix):
actions = defaultdict(list)
actions[inst.PREFIX] = prefix
for dist in dists:
if install.is_linked(prefix, dist):
continue
extracted_in = extracted_where(dist)
if extracted_in:
if config.always_copy:
lt = install.LINK_COPY
elif install.try_hard_link(extracted_in, prefix, dist):
lt = install.LINK_HARD
else:
lt = (install.LINK_SOFT if
(config.allow_softlinks
and sys.platform != 'win32') else install.LINK_COPY)
actions[inst.LINK].append('%s %s %d' % (dist, extracted_in, lt))
else:
# Make a guess from the first pkgs dir, which is where it will be
# extracted
try:
os.makedirs(join(config.pkgs_dirs[0], dist, 'info'))
index_json = join(config.pkgs_dirs[0], dist, 'info',
'index.json')
with open(index_json, 'w'):
pass
if config.always_copy:
lt = install.LINK_COPY
elif install.try_hard_link(config.pkgs_dirs[0], prefix, dist):
lt = install.LINK_HARD
else:
lt = (install.LINK_SOFT if
(config.allow_softlinks
and sys.platform != 'win32') else install.LINK_COPY)
actions[inst.LINK].append('%s %s %d' %
(dist, config.pkgs_dirs[0], lt))
except (OSError, IOError):
actions[inst.LINK].append(dist)
finally:
try:
install.rm_rf(join(config.pkgs_dirs[0], dist))
except (OSError, IOError):
pass
actions[inst.EXTRACT].append(dist)
if install.is_fetched(config.pkgs_dirs[0], dist):
continue
actions[inst.FETCH].append(dist)
return actions
def ensure_linked_actions(dists, prefix):
actions = defaultdict(list)
actions[inst.PREFIX] = prefix
for dist in dists:
if install.is_linked(prefix, dist):
continue
extracted_in = extracted_where(dist)
if extracted_in:
if config.always_copy:
lt = install.LINK_COPY
elif install.try_hard_link(extracted_in, prefix, dist):
lt = install.LINK_HARD
else:
lt = (install.LINK_SOFT if (config.allow_softlinks and
sys.platform != 'win32') else
install.LINK_COPY)
actions[inst.LINK].append('%s %s %d' % (dist, extracted_in, lt))
else:
# Make a guess from the first pkgs dir, which is where it will be
# extracted
try:
os.makedirs(join(config.pkgs_dirs[0], dist, 'info'))
index_json = join(config.pkgs_dirs[0], dist, 'info',
'index.json')
with open(index_json, 'w'):
pass
if config.always_copy:
lt = install.LINK_COPY
elif install.try_hard_link(config.pkgs_dirs[0], prefix, dist):
lt = install.LINK_HARD
else:
lt = (install.LINK_SOFT if (config.allow_softlinks and
sys.platform != 'win32') else
install.LINK_COPY)
actions[inst.LINK].append('%s %s %d' % (dist, config.pkgs_dirs[0], lt))
except (OSError, IOError):
actions[inst.LINK].append(dist)
finally:
try:
install.rm_rf(join(config.pkgs_dirs[0], dist))
except (OSError, IOError):
pass
actions[inst.EXTRACT].append(dist)
if install.is_fetched(config.pkgs_dirs[0], dist):
continue
actions[inst.FETCH].append(dist)
return actions
def render_recipe(recipe_path, no_download_source, verbose, dirty=False):
if not isdir(config.croot):
os.makedirs(config.croot)
with Locked(config.croot):
if not dirty:
if sys.platform == 'win32':
if isdir(source.WORK_DIR):
move_to_trash(source.WORK_DIR, '')
else:
rm_rf(source.WORK_DIR)
assert not isdir(source.WORK_DIR), ("Failed to clean work directory. Please close open"
" programs/terminals/folders and try again.")
arg = recipe_path
# Don't use byte literals for paths in Python 2
if not PY3:
arg = arg.decode(getpreferredencoding() or 'utf-8')
if isfile(arg):
if arg.endswith(('.tar', '.tar.gz', '.tgz', '.tar.bz2')):
recipe_dir = tempfile.mkdtemp()
t = tarfile.open(arg, 'r:*')
t.extractall(path=recipe_dir)
t.close()
need_cleanup = True
else:
print("Ignoring non-recipe: %s" % arg)
return
else:
recipe_dir = abspath(arg)
need_cleanup = False
if not isdir(recipe_dir):
sys.exit("Error: no such directory: %s" % recipe_dir)
try:
m = MetaData(recipe_dir)
except exceptions.YamlParsingError as e:
sys.stderr.write(e.error_msg())
sys.exit(1)
m, need_download, need_reparse_in_env = parse_or_try_download(m,
no_download_source=no_download_source,
verbose=verbose, dirty=dirty)
if need_cleanup:
shutil.rmtree(recipe_dir)
return m, need_download, need_reparse_in_env
def check_install(packages, platform=None, channel_urls=(), prepend=True,
minimal_hint=False):
try:
prefix = tempfile.mkdtemp('conda')
specs = common.specs_from_args(packages)
index = get_index(channel_urls=channel_urls, prepend=prepend,
platform=platform, prefix=prefix)
linked = ci.linked(prefix)
plan.add_defaults_to_specs(Resolve(index), linked, specs)
actions = plan.install_actions(prefix, index, specs, pinned=False,
minimal_hint=minimal_hint)
plan.display_actions(actions, index)
return actions
finally:
ci.rm_rf(prefix)
def execute(args, parser):
name = args.remote_definition or args.name
try:
spec = specs.detect(name=name,
filename=args.file,
directory=os.getcwd(),
selectors=args.select)
env = spec.environment
# FIXME conda code currently requires args to have a name or prefix
if args.prefix is None:
args.name = env.name
except exceptions.SpecNotFound as e:
common.error_and_exit(str(e), json=args.json)
prefix = common.get_prefix(args, search=False)
if args.force and not is_root_prefix(prefix) and os.path.exists(prefix):
rm_rf(prefix)
cli_install.check_prefix(prefix, json=args.json)
# TODO, add capability
# common.ensure_override_channels_requires_channel(args)
# channel_urls = args.channel or ()
for installer_type, pkg_specs in env.dependencies.items():
try:
installer = get_installer(installer_type)
installer.install(prefix, pkg_specs, args, env)
except InvalidInstaller:
sys.stderr.write(
textwrap.dedent("""
Unable to install package for {0}.
Please double check and ensure you dependencies file has
the correct spelling. You might also try installing the
conda-env-{0} package to see if provides the required
installer.
""").lstrip().format(installer_type))
return -1
touch_nonadmin(prefix)
if not args.json:
cli_install.print_activate(args.name if args.name else prefix)
def test_logs_messages_generated_for_each_retry(self):
with self.generate_directory_mocks() as mocks:
random_path = self.generate_random_path
mocks['rmtree'].side_effect = OSError(random_path)
max_retries = random.randint(1, 10)
with self.assertRaises(OSError):
install.rm_rf(random_path, max_retries=max_retries)
log_template = "\n".join([
"Unable to delete %s" % random_path,
"%s" % OSError(random_path),
"Retrying after %d seconds...",
])
expected_call_list = [mock.call(log_template % i)
for i in range(max_retries)]
mocks['log'].debug.assert_has_calls(expected_call_list)