def __init__(self, file, **kwargs):
properties = GTF.DEFAULT_PROPERTIES.copy()
properties.update({'file': file, **kwargs})
super().__init__(properties)
self.bgz_file = build_gtf_index(file)
color = self.properties['color']
if (type(color) is str) and (color.startswith('#')):
self.colors = [color]
elif type(color) is list:
self.colors = [
c for c in color if (type(c) is str) and c.startswith('#')
]
if not self.colors:
self.colors = GTF.RANDOM_COLORS
else:
self.colors = GTF.RANDOM_COLORS
def __init__(self, file_, **kwargs):
properties_dict = {
"file": file_,
"row_filter": 'feature == "gene"',
"length_ratio_thresh": 0.005,
"height": GTF.DEFAULT_HEIGHT,
"title": '',
"color": 'random',
}
properties_dict.update(kwargs)
super().__init__(properties_dict)
self.bgz_file = build_gtf_index(file_)
color = self.properties['color']
if (type(color) is str) and (color.startswith('#')):
self.colors = [color]
elif type(color) is list:
self.colors = [
c for c in color if (type(c) is str) and c.startswith('#')
]
if len(self.colors) == 0:
self.colors = GTF.RANDOM_COLORS
else:
self.colors = GTF.RANDOM_COLORS