def amigo_batch_resume(self):
print "RESUME!!! Tempfile exist: %s!" % self.tempfile
tempout = open(self.tempfile, "r+")
t2File = self.tempfile + "object"
with open(t2File, 'r') as f:
self.web_session_list = pickle.load(f)
total_BLAST = len(self.web_session_list)
self.stored_session_id_result = []
self.stored_web_session_info = [0] * total_BLAST
line = ""
is_parse_result = False
is_saving_completed = False
for line in tempout.readlines():
line = line.strip()
# print line
if line.startswith(STORE_SESSION_ID_STRING):
index = line.split(self.DELIM)
sid = index[2]
# self.stored_web_session_info.append((index[1], sid))
self.stored_web_session_info[int(index[1])] = (index[1], sid)
if line.startswith(END_SESSION_ID_STRING):
is_saving_completed = True
if line.startswith(END_STORE_RESULT_STRING):
is_parse_result = False
if is_parse_result and line.startswith(SEQ_ID_STRING):
index = line.split(self.DELIM) # Use $ becasue GO:000251 terms got : already
seqid = index[1]
seqSet = index[2]
# print seqid, seqSet
# sset = Ste
seq = GoSequence(seqid, seqSet)
seq.combined_terms = eval(seqSet)
# print seq
self.all_seqs.append(seq)
if line.startswith(STORE_RESULT_STRING):
index = line.split(self.DELIM)
sid = index[1]
self.stored_session_id_result.append(sid)
is_parse_result = True
if self.debug: # # These might have to go
print "==DEBUG: Full saved session_list:", self.stored_web_session_info
print "==DEBUG: Stored sessios_results:", self.stored_session_id_result
if not is_saving_completed:
print "===Warning!! Not all session_ids are stored, recreate using partial batch mode"
return self.amigo_batch_mode_resume_partial()
stored_session_id_only = self.rebuild_web_session_list_from_tempobject()
complete_index_boolean = [x in self.stored_session_id_result for x in stored_session_id_only]
# stored_session_id_only = [ x[1] for x in self.stored_web_session_info]
# missiing_session_id = set(stored_session_id_only) - set(self.stored_session_id_result)
# missiing_session_id = list(missiing_session_id)
missing_length = total_BLAST - sum(complete_index_boolean)
print "Missing %d/%d session(s)!" % (missing_length, total_BLAST)
if self.debug:
missing_session_index = [i for i, is_comp in enumerate(complete_index_boolean) if not is_comp]
print "==DEBUG: Missing %d/%d session(s): Index: %s" % (len(missing_session_index), total_BLAST, missing_session_index)
print stored_session_id_only
print self.stored_session_id_result
print complete_index_boolean
# exit()
self.retrieving_all_session_results(complete_index_boolean, tempout)
tempout.close()
print "End amigo_batch_resume, number of missed session: %d" % missing_length
return missing_length
