Exemplos de SoftwareAssembler.get_all_par em Python

Exemplo n.º 1

Arquivo: test_software_assembler.py Projeto: YoderLab/MMAP

    def test_min_setting(self):
        infile = self.unittest_dir + "testControlFileMin"

        setting = Setting.create_setting_from_file(infile)
        assembler = SoftwareAssembler(setting)

        expected = set(TestSoftwareAssembler.list_all_parameters)
        self.assertEqual(expected, set(assembler.get_all_par().viewkeys()))

        print assembler.get_all_par().values()

Exemplo n.º 2

Arquivo: test_software_assembler.py Projeto: YoderLab/MMAP

    def test_some_optional(self):
        infile = self.unittest_dir + "testControlFileOp1"

        setting = Setting.create_setting_from_file(infile)
        assembler = SoftwareAssembler(setting)

        expected = set(TestSoftwareAssembler.list_all_parameters)
        self.assertEqual(expected, set(assembler.get_all_par().viewkeys()))
        self.assertEqual(run_genovo.DEFAULT_GENOVO_NO_ITER, assembler.get("genovo_num_iter"))
        self.assertEqual("1e-10", assembler.get("blast_e_value"))