def test_init_cond():
params = Data()
params.delta_x = 0.1 * np.ones(50)
params.analytical = wave_forms.square
controller = Controller(params)
assert(controller.init[0] == 0.0)
assert(controller.init[-1] == 0.0)
def test_mesh_initialize():
params = Data()
params.delta_x = np.array([0.5, 1.0, 0.1, 2.0])
controller = Controller(params)
correct = np.array([0.25, 1.0, 1.55, 2.6])
assert(controller.mesh.domain_width == 3.6)
assert(len(controller.mesh.x) == 4)
assert((controller.mesh.x == correct).all())
def test_conv_test():
my_params = Data()
my_params.plotter = Data()
my_params.plotter.always_plot = False
my_params.plotter.never_plot = True
my_params.plotter.plot_interval = 0.5
my_params.t_max = 50.0
#my_params.analytical = lambda x: wave_forms.sin_4(x, 2 * np.pi * 1.0)
my_params.analytical = lambda x: wave_forms.gaussian(x, 4.0, 2.5)
ct = ConvergenceTest(my_params, 5.0)
def main():
data_path = os.path.join(CONFIGS['data']['dir'],
CONFIGS['data']['filename'])
data = Data(data_path, split=[0.7, 0.15, 0.15])
data.preprocess()
data.vectorize()
trainloader = DataLoader(data.train(), batch_size=128)
trainloader2 = DataLoader(data.train(), batch_size=1)
devloader = DataLoader(data.valid(), batch_size=1)
vae = VAE(data.input_dim_(), 256, 128, device).to(device)
vae.train(trainloader, trainloader2, devloader)
def main():
parser = argparse.ArgumentParser(prog='G+RSS.Poller')
parser.add_argument('--redis_port', default=6379, type=int)
parser.add_argument('--redis_host', default='127.0.0.1')
parser.add_argument('--redis_db', default=0, type=int)
parser.add_argument('--log_path', required=True)
parser.add_argument('--config_path', required=True)
parser.add_argument('--max_results', default=4, type=int)
parser.add_argument('--name', required=True)
parser.add_argument('--period', default=900, type=int)
args = parser.parse_args()
logging.basicConfig(format='%(asctime)s %(message)s',
datefmt='%m/%d/%Y %H:%M:%S')
logger = logging.getLogger(__name__)
logger.addHandler(
config.getLogHandler(os.path.join(args.log_path, 'poller_test.log')))
logger.level = logging.DEBUG
data = Data(logger, args.redis_host, args.redis_port, args.redis_db)
picasa = Picasa(logger, args.config_path)
album = picasa.get_album('113347540216001053968', '5963913461943227665')
print(album)
def main():
parser = argparse.ArgumentParser(prog='G+RSS.Poller')
parser.add_argument('--redis_port', default=6379, type=int)
parser.add_argument('--redis_host', default='127.0.0.1')
parser.add_argument('--redis_db', default=0, type=int)
parser.add_argument('--log_path', required=True)
parser.add_argument('--config_path', required=True)
parser.add_argument('--max_results', default=4, type=int)
parser.add_argument('--name', required=True)
parser.add_argument('--period', default=900, type=int)
args = parser.parse_args()
logging.basicConfig(format='%(asctime)s %(message)s',
datefmt='%m/%d/%Y %H:%M:%S')
logger = logging.getLogger(__name__)
logger.addHandler(
config.getLogHandler(os.path.join(args.log_path, 'poller_test.log')))
logger.level = logging.DEBUG
data = Data(logger, args.redis_host, args.redis_port, args.redis_db)
providers = {'google': GooglePollMock(logger, data)}
pol = Poller(logger=logger, name=args.name, data=data, providers=providers)
pol.poll(args.period)
def __init__(self):
self.data, self.label = Data().generate_data()
self.model = LinearModel()
self.learning_rate = cfg.LEARNING_RATE
self.max_step = cfg.MAX_STEP
self.stop_condition = cfg.STOP_CONDITION
self.global_step = cfg.GLOBAL_STEP
self.cost = []
self.weights = cfg.INIT_WEIGHTS
def __init__(self):
self.data = Data().generate_data()
self.model = LinearModel()
self.num_data = cfg.NUM_DATA
self.learning_rate = cfg.LEARNING_RATE
self.max_step = cfg.MAX_STEP
self.weights = cfg.INIT_W
self.cost = []
self.stop_condition = cfg.STOP_CONDITION
self.global_step = 0
def calculate_predictions(experiment_name, dataset):
print('Loading data... ')
sys.stdout.flush()
if experiment_name in ['danq', 'deepsea', 'danqjaspar']:
data = Data(data_suffix='_full')
X, y = data.get_data(dataset)
else:
data = get_data_loader(experiment_name)
X, y = data.get_data(dataset)
print('Loading model... ')
sys.stdout.flush()
model = get_trained_model(experiment_name)
print('Calculating predictions... ')
sys.stdout.flush()
make_predictions(model,
X,
join(
RESULT_DIR, 'predictions-best',
'{}-{}{}.npy'.format(experiment_name, dataset,
data.suffix)),
verbose=1)
def save_experiment_design(model_class, experiment_name, model_args={}, data_args={}, train_settings={},
callback_settings={}, check_model=False, check_data=False):
to_save = {'model_class': model_class,
'model_args': model_args,
'data_args': data_args,
'train_settings': train_settings,
'callback_settings': callback_settings}
if check_model:
model_class(**model_args).get_compiled_model()
if check_data:
Data(**data_args)
os.makedirs('experiment_settings', exist_ok=True)
pickle.dump(to_save, open('experiment_settings/{}.p'.format(experiment_name), 'wb'))
def test_error_tracker():
delta_x = 0.01 * np.ones(100)
exact = lambda t: np.linspace(0, 1, 100) + t
params = Data()
params.error_norm = 1
params.plotter = Data()
params.plotter.never_plot = True
e1 = ErrorTracker(Mesh(delta_x), exact, params)
params.error_norm = 2
e2 = ErrorTracker(Mesh(delta_x), exact, params)
for i in range(1, 10):
# the exact result is x + i
e1.update(e1.mesh.x + 0.9 * i, float(i), 1.0)
# in any norm the error should be 0.i
assert(abs(e1.error[i] - i * 0.1) <= 1e-9)
new_val = exact(i)
new_val[0] = 0
# the difference
e2.update(new_val, float(i), 1.0)
# L2 norm of the error should be 0.(i + 1)
assert(abs(e2.error[i] - (i * 0.01)) <= 1e-9)
def set_matrix(self):
if self.radio_file.isChecked():
file_name = QtWidgets.QFileDialog.getOpenFileName(
self, 'Choose file', os.path.expanduser('~'),
'Text file (*.txt);;All files (*)')[0]
if file_name:
task_type = 'min'
if self.max_type_radio.isChecked():
task_type = 'max'
self.task = Data(file_name,
task_type=task_type,
from_file=True)
self.first_city_spin_box.setMaximum(len(self.task.matrix))
if self.radio_keyboard.isChecked():
task_type = 'min'
if self.max_type_radio.isChecked():
task_type = 'max'
dialog = DialogView.get_matrx()
if dialog[0]:
matrix = np.array(dialog[1])
self.task = Data(matrix, task_type=task_type)
self.first_city_spin_box.setMaximum(len(self.task.matrix))
def _test_controller_helper(wave, t_max, delta_x, error_bound, always=False,
setup_callback=None):
# Simple test to make sure the code works right
my_params = Data()
my_params.delta_x = delta_x
my_params.plotter = Data()
my_params.plotter.always_plot = always
my_params.plotter.never_plot = not interactive_test
my_params.plotter.plot_interval = 0.5
my_params.t_max = t_max
my_params.analytical = wave
cont = Controller(my_params)
if setup_callback is not None:
setup_callback(cont)
et = ErrorTracker(cont.mesh, cont.analytical, my_params)
soln_plot = UpdatePlotter(my_params.plotter)
soln_plot.add_line(cont.mesh.x, cont.init, '+')
soln_plot.add_line(cont.mesh.x, cont.init, '-')
cont.observers.append(soln_plot)
cont.observers.append(et)
result = cont.compute()
soln_plot.add_line(cont.mesh.x, cont.exact)
# check essentially non-oscillatoriness
# total variation <= initial_tv + O(h^2)
init_tv = Controller.total_variation(cont.init)
result_tv = Controller.total_variation(result)
if interactive_test is True:
pyp.show()
assert(result_tv < init_tv + error_bound)
# check error
assert(et.error[-1] < error_bound)
return et, soln_plot
def __init__(self, params=Data()):
self.proj_name = "test"
self.run_name = "test"
if "proj_name" in params:
self.proj_name = params.proj_name
if "run_name" in params:
self.run_name = params.run_name
if "material" in params:
self.material = params.material
self.params = params
self.data = Data()
self.data_loc = None
self._assign_data_location()
self._initialize()
import matplotlib.pyplot as plt
from core.utils import get_kfold_index
from core.data import Data
from core.app_config import AppConfig
from core.scoring import scob
matplotlib.use('Agg')
param = {
"lr": 1e-04,
"ut_1": 1024,
"l1": 0.0,
"ut_2": 256,
"l2": 0.00,
"dp": 0.0,
'a': 'leaky_relu',
'inputs_shape': (7, )
}
model = build_sub_model_1(**param)
data = Data()
(x_train, y_train), (x_test,
y_test), (x_test_1,
y_test_1), (x_test_2,
y_test_2) = data.get_channels(
['sequence_feature'])
model.fit(x_train[0], y_train, validation_split=0.2, batch_size=32, epochs=50)
score = scob.get_scores(y_test_2[:, 1], model.predict(x_test_2)[:, 1])
print(score)
while task_type not in ('min', 'max'):
print('Wrong, try again.')
task_type = input('Enter task type(min or max):\n')
print('How you want to enter data?:\n'
'\t1)From file;\n'
'\t2)From keyboard;')
insert_type = input()
while insert_type not in ('1', '2'):
insert_type = input()
if insert_type not in ('1', '2'):
print('Error, try again\n')
if insert_type == '1':
print('Careful! Matrix in file should be square. One string in file - one row of matrix, '
'entry splitter - ";".\n')
matr_file = input('Enter path to file(full):\n')
task = Data(matr_file, task_type, from_file=True)
task.solve()
print('Answer:', task.result)
elif insert_type == '2':
matrix = []
dim = input('Enter dimension(max=10):\n')
while int(dim) not in range(1, 11):
print('Wrong, try again\n')
dim = input()
print('Enter matrix(1 row per string, entries splitter is whitespace:')
for i in range(int(dim)):
row = input()
matrix.append(list(map(float, row.split(' '))))
matrix = np.array(matrix)
task = Data(matrix, task_type)
start = time.clock()
import numpy as np
import pickle
import os
from sklearn.model_selection import KFold
import pandas as pd
from core.scoring import get_scores, show_scores
from core.models import *
# tf.keras.backend.set_floatx('float32')
from itertools import combinations
from core.data import Data
from core.utils import get_kfold_index
from core.app_config import AppConfig
data = Data()
config = AppConfig()
config.CUDA_VISIBLE_DEVICES = '0'
config.data = Data()
kfold_index = get_kfold_index() # 交叉验证的索引
cb = tf.keras.callbacks.EarlyStopping(monitor='val_loss',
min_delta=0.,
patience=10,
verbose=2,
mode='min',
baseline=None) # 早停参数
params = dict(cv=5,
epochs=500,
batch_size=32,
kfold_index=kfold_index,
cb=[cb])
config.extent(params)
from core.data import Data
#ALL IN STANDARD SI UNITS
# all values here come from the wet diabase in takeuchi, fialko
wetdiabase = Data()
wetdiabase.density = 2850.0 # kg/m^3
wetdiabase.specific_heat = 1000.0 # J/kgK
wetdiabase.activation_energy = 2.6e5 # J/mol
wetdiabase.stress_exponent = 3.4
wetdiabase.creep_constant = 2.2e-4 * 10 ** (-6 * 3.4) # (Pa^-n)/sec
wetdiabase.thermal_diffusivity = 7.37e-7 # m^2/sec
wetdiabase.youngs_modulus = 80.0e9 # Pa
wetdiabase.poisson = 0.25
wetdiabase.shear_modulus = wetdiabase.youngs_modulus / (2 * (1 + wetdiabase.poisson))
wetdiabase.lame_lambda = (wetdiabase.youngs_modulus * wetdiabase.poisson) /\
((1 + wetdiabase.poisson) * (1 - 2 * wetdiabase.poisson))
class Experiment(object):
"""
The experiment class provides a general framework for defining a numerical
experiment and running it.
Any experiment should be subclassed from this "Experiment" cass. The functions
to implement are "_initialize", "_compute" and "_visualize".
The class provides methods to save data automatically to a central location.
By convention a subclass should never modify the parameters passed to it. Use
self.data.var_name or self.var_name depending on whether the data should be saved
or not
"""
def __init__(self, params=Data()):
self.proj_name = "test"
self.run_name = "test"
if "proj_name" in params:
self.proj_name = params.proj_name
if "run_name" in params:
self.run_name = params.run_name
if "material" in params:
self.material = params.material
self.params = params
self.data = Data()
self.data_loc = None
self._assign_data_location()
self._initialize()
def _initialize(self):
raise Exception("_initialize is still a stub method")
def compute(self):
"""
Abstract base for the computation of an experiment
"""
return self._compute()
def _compute(self):
raise Exception("_compute is still a stub method")
def visualize(self):
"""
Abstract base for the visualization of an experiment
"""
return self._visualize()
def _visualize(self):
raise Exception("_visualize is still a stub method")
def save(self):
"""
Save the data and the parameters
"""
self.params.save(self.data_loc + "/params.pkl")
self.data.save(self.data_loc + "/data.pkl")
def load(self, filename):
self.data = Data.load(filename)
def _assign_data_location(self):
"""
This assigns a data folder to the experiment. The folder is chosen
as the data_root/proj_name/run_name# where # is the lowest number
that hasn't already been chosen.
"""
if self.data_loc is not None:
return
if MPI.COMM_WORLD.Get_rank() is not 0:
return
folder_name = data_root + "/" + self.proj_name
if not os.path.exists(folder_name):
os.mkdir(folder_name)
timestamp = datetime.datetime.now().strftime("%Y%m%d_%H%M%S")
new_run_folder_name = folder_name + "/" + self.run_name + "_" + timestamp
# We intentionally ignore the case where the folder already exists.
# This means data may be overwritten, but it is the user's resp
# to make sure this doesn't happen.
if not os.path.exists(new_run_folder_name):
os.mkdir(new_run_folder_name)
self.data_loc = new_run_folder_name
def __init__(self):
self.data = Data().generate_data()
self.num_data = cfg.NUM_DATA
from core.update_plotter import UpdatePlotter
from core.error_tracker import ErrorTracker
from core.experiment import Experiment
from rupturotops.controller import Controller
from parameters.material import wetdiabase
from core.constants import consts
from rupturotops import wave_forms
assert consts
from core.debug import _DEBUG
assert _DEBUG
import numpy as np
# Define the standard parameter data structure.
params = Data()
# What material should we use? Look in the parameters/material file
# to see the options and to see how to define a new material.
params.material = wetdiabase
# Setup the solution domain, first we define the cell spacings
delta_x = []
count = 2000
domain_length = 10.0
for i in range(count):
if i % 10 == 0:
delta_x.append(domain_length / count)
else:
delta_x.append(domain_length / count)
import os
from core.models import *
from core.utils import cross_validation
from core.visualization import plot_cv_out, plot_roc_curve_on_ax
import matplotlib
import matplotlib.pyplot as plt
from core.utils import get_kfold_index
from core.data import Data
from core.app_config import AppConfig
matplotlib.use('Agg')
# 配置参数
config = AppConfig()
config.CUDA_VISIBLE_DEVICES = '0'
config.data = Data()
kfold_index = get_kfold_index() # 交叉验证的索引
bc = tf.keras.callbacks.EarlyStopping(monitor='val_loss',
min_delta=0.,
patience=10,
verbose=2,
mode='min',
baseline=None) # 早停参数
params = dict(cv=5, epochs=500, batch_size=32, kfold_index=kfold_index, bc=bc)
config.extent(params)
def train_a_model(data,
model,
output_dir,
def load(self, filename):
self.data = Data.load(filename)
from core.data import Data
#ALL IN STANDARD SI UNITS
# all values here come from the wet diabase in takeuchi, fialko
wetdiabase = Data()
wetdiabase.density = 2850.0 # kg/m^3
wetdiabase.specific_heat = 1000.0 # J/kgK
wetdiabase.activation_energy = 2.6e5 # J/mol
wetdiabase.stress_exponent = 3.4
wetdiabase.creep_constant = 2.2e-4 * 10**(-6 * 3.4) # (Pa^-n)/sec
wetdiabase.thermal_diffusivity = 7.37e-7 # m^2/sec
wetdiabase.youngs_modulus = 80.0e9 # Pa
wetdiabase.poisson = 0.25
wetdiabase.shear_modulus = wetdiabase.youngs_modulus / (
2 * (1 + wetdiabase.poisson))
wetdiabase.lame_lambda = (wetdiabase.youngs_modulus * wetdiabase.poisson) /\
((1 + wetdiabase.poisson) * (1 - 2 * wetdiabase.poisson))
from core.data import Data import numpy as np from material import wetdiabase from experiments.diffusive import Diffusive from core.constants import consts params = Data() params.material = wetdiabase params.proj_name = 'diffusive' params.run_name = 'test' params.low_x = 0.0 params.high_x = 0.1 params.low_t = 0.001 * consts.secs_in_a_year params.high_t = 1000000.0 * consts.secs_in_a_year params.x_count = 25 params.t_count = 100 params.x_domain = np.linspace(params.low_x, params.high_x, params.x_count) params.t_domain = np.linspace(params.low_t, params.high_t, params.t_count) params.time_scale = 100.0 * consts.secs_in_a_year # 100 years params.init_temp = 350.0 + 273.0 # initial temperature params.delta_t = 2.5 # total increase in temperature for an event params.stress = 100.0e6 # MPa experiment = Diffusive
def main():
print("Note: this one doesn't collect any password or username\n" +
"This is only for personal use.")
user = manager.chaeck_data()
user_seprate = manager.spilit_data(user)
username = user_seprate[0]
password = user_seprate[1]
data = Data() # data contains urls and params
now = datetime.datetime.now() # Now datetime
events_list = list_events_summary() # List of events in calendar
# Get name and token
token = baddyrequest.send_token(data, username, password)
profile = baddyrequest.send_profile(data, token)
# str to dict
profile = literal_eval(profile)
# Show name
print(profile['FirstName'] + ' ' + profile['LastName'])
# Get lessons and count the number of them
lessons = baddyrequest.send_lessons(data, token)
lessons = literal_eval(lessons)
lessons = lessons[0]['Lessons']
# number_lessons = len(lessons)
for les in lessons:
number = les['GroupID']
practice_url = f"https://yaraapi.mazust.ac.ir/api/practices/actives/{number}"
practices = baddyrequest.send(data, practice_url, token)
for prac in practices:
# Convert date by jalali
finish_date = prac['FinishDate']
finish_date = conv.jalali_converter(finish_date)
# Finish time contains hour and minute
finish_time = prac['FinishTime']
# Seprate hour and minute
finish_hour = int(finish_time[:2])
finish_minute = int(finish_time[:2])
# Add time to datetime.datetime
finish_datetime = finish_date.replace(minute=finish_minute,
hour=finish_hour)
# Start DateTime
start_date = prac['StartDate']
start_time = prac['StartTime']
# Convert date by jalali
start_date = conv.jalali_converter(start_date)
# Seprate hour and minute
start_hour = int(start_time[:2])
start_minute = int(start_time[:2])
# Add time to datetime.datetime
start_datetime = start_date.replace(minute=start_minute,
hour=start_hour)
title = prac['Title']
description = prac['Description']
body = {
"summary": f"{les['LessonTitle']} - {title}",
"description": description,
"start": {
"dateTime": start_datetime.isoformat(),
"timeZone": 'Asia/Tehran'
},
"end": {
"dateTime": finish_datetime.isoformat(),
"timeZone": 'Asia/Tehran'
},
}
if (finish_datetime >= now) and (body['summary']
not in events_list):
create(body)
import core
import scripts
from core.data import Data
from core.text import TextConverter
if __name__ == '__main__':
# 初始化应用上下文
core.init_context("config.yaml")
# 数据库构建脚本
scripts.init_data_base(core.csv_tpl, core.pdbc_tpl)
data_dict = {
'城市数据': core.pdbc_tpl.query_table("t_city_data"),
'市场数据': core.pdbc_tpl.query_table("t_market_data"),
'景气指数': core.pdbc_tpl.query_table("t_prosperity_index"),
'量价指数': core.pdbc_tpl.query_table("t_volume_price_index"),
'旅客规模': core.pdbc_tpl.query_table("t_passenger_size"),
'旅客特征': core.pdbc_tpl.query_table("t_passenger_characteristics"),
'日均旅客量': core.pdbc_tpl.query_table("t_average_daily_passenger_volume"),
}
# 生成图片脚本
scripts.generate_img(core.word_tpl, data_dict)
# 生成文本脚本
text = TextConverter(core.word_tpl, Data(data_dict))
# 生成文档脚本
scripts.generate_word(core.word_tpl, "2017年航指数半年白皮书—发布版.docx", text)
def __init__(self):
self.data, self.label = Data().generate_data()
print((self.label ** 2).sum() / 1000)
self.data_num = cfg.DATA_NUM
def get_data_loader(experiment_name):
data_args = pickle.load(
open('experiment_settings/{}.p'.format(experiment_name),
'rb'))['data_args']
return Data(**data_args)
import os, sys
from core.data import Data
from core.train_model import get_trained_model
def append_to_losses(expt_name,
dataset,
loss,
filename='final_losses_{}.csv'.format(sys.argv[2])):
with open(filename, 'a') as f:
f.write('{},{},{}\n'.format(expt_name, dataset, loss))
RESULT_DIR = os.environ.get('RESULT_DIR', 'results')
data = Data(sequence_length=int(sys.argv[2]), data_suffix='_full')
m = get_trained_model(sys.argv[1])
print('evaluating model', flush=True)
l = m.evaluate(*data.get_data('test'))
print('saving results', flush=True)
append_to_losses(sys.argv[1], 'test', l)