def __init__(self, url, username, password):
self.client = coreapi.Client()
self.url = url
result = requests.request('POST',
url + '/api/v1/token/',
data={
'username': username,
'password': password
})
b = result.json()
auth = coreapi.auth.TokenAuthentication(token=b['token'])
self.client = coreapi.Client(auth=auth)
def connect_client(self):
logger.info("Node.connect_client, start of")
logger.info("Node.connect_client, trying to reach : {}".format(
self.hostname))
assert self.node_connection is not None, "NodeConnection.connect_client, node_connection is None"
try:
self.node_connection.ready_for_connect()
except AssertionError as aerr:
logger.error(
"Node.connect_client, connection data not properly filled")
logger.error("Node.connect_client, {}".format(aerr))
raise aerr
node_client = coreapi.Client()
node_schema = node_client.get(self.hostname)
logger.info("####Not Logged schema")
logger.info(node_schema)
action = ['api-token-auth', 'create']
node_user = self.node_connection.get_user()
params = {
'username': node_user['username'],
'password': node_user['pwd']
}
try:
logger.info("Node.connect_client, getting token")
result = node_client.action(node_schema, action, params)
logger.info("Node.connect_client, new token {}".format(result))
except coreapi.exceptions.ErrorMessage as err:
logger.error("Node.connect_client : {}".format(err.error))
raise err
auth = coreapi.auth.TokenAuthentication(scheme='JWT',
token=result['token'])
logger.info("Node.connect_client, creating authenticated client")
node_client = coreapi.Client(auth=auth)
node_schema = node_client.get(self.hostname)
logger.info("####Logged in schema")
logger.info(node_schema)
logger.info(
"Node.connect_client, store user,client,schema and token in connection object"
)
self.node_connection = NodeConnection(user=node_user,
client=node_client,
schema=node_schema,
token=result['token'])
logger.info("Node.connect_client, end of")
return None
def test_client_connection():
client = coreapi.Client()
schema = client.get('http://fas.42king.com:8197/api/schema/')
action = ['token', 'create']
params = {'username': "******", 'password': '******'}
result = client.action(schema, action, params)
action = ['login', 'create']
print(result)
auth = coreapi.auth.TokenAuthentication(scheme='OAUTH',
token=result['token'])
result = client.action(schema, action, params)
print(result)
clent = coreapi.Client(auth=auth)
print(client.get('http://fas.42king.com:8197/api/apps/'))
def main(self):
recentmjd = date_to_mjd(datetime.datetime.utcnow() - datetime.timedelta(14))
survey_obs = SurveyObservation.objects.filter(obs_mjd__gt=recentmjd)
field_pk = survey_obs.values('survey_field').distinct()
survey_fields = SurveyField.objects.filter(pk__in = field_pk).select_related()
for s in survey_fields:
width_corr = 3.1/np.abs(np.cos(s.dec_cen))
ra_offset = Angle(width_corr/2., unit=u.deg)
dec_offset = Angle(3.1/2., unit=u.deg)
sc = SkyCoord(s.ra_cen,s.dec_cen,unit=u.deg)
ra_min = sc.ra - ra_offset
ra_max = sc.ra + ra_offset
dec_min = sc.dec - dec_offset
dec_max = sc.dec + dec_offset
result_set = []
for page in range(500):
print(s,page)
marsurl = '%s/?format=json&sort_value=jd&sort_order=desc&ra__gt=%.7f&ra__lt=%.7f&dec__gt=%.7f&dec__lt=%.7f&jd__gt=%i&rb__gt=0.5&page=%i'%(
self.options.ztfurl,ra_min.deg,ra_max.deg,dec_min.deg,dec_max.deg,recentmjd+2400000.5,page+1)
client = coreapi.Client()
try:
schema = client.get(marsurl)
if 'results' in schema.keys():
result_set = np.append(result_set,schema['results'])
else: break
except: break
#break
transientdict,nsn = self.parse_data(result_set,date_to_mjd(datetime.datetime.utcnow() - datetime.timedelta(2)))
print('uploading %i transient detections'%nsn)
self.send_data(transientdict)
def queryApi(date):
# lambda function to check the rate exists in the fetched data
exists = lambda x, y: y[x] if x in y else None
# Coreapi fetches an OrderedDict
client = coreapi.Client()
result = client.get('https://api.fixer.io/{}?base=USD'.format(
date.strftime("%Y-%m-%d")))
latest = rates(
date=datetime.datetime.strptime(result['date'], '%Y-%m-%d'),
curencyAUD=exists('AUD', result['rates']),
curencyCAD=exists('CAD', result['rates']),
curencyCHF=exists('CHF', result['rates']),
curencyCNY=exists('CNY', result['rates']),
curencyEUR=exists('EUR', result['rates']),
curencyGBP=exists('GBP', result['rates']),
curencyNZD=exists('NZD', result['rates']),
curencyZAR=exists('ZAR', result['rates']),
)
try:
latest.save()
except:
pass
return latest
def getNearbyRestautants(request):
client = coreapi.Client()
schema = client.get(
'https://maps.googleapis.com/maps/api/place/nearbysearch/json')
data = request.data
location = (data['lat'], data['lng'])
radius = 3000
placetype = 'restaurant'
key = ''
params = {
"location": location,
"radius": radius,
"type": placetype,
"key": key
}
#result = client.action(schema, [], params)
results = datajson.data['results']
toreturn = []
for place in results:
obj = {}
obj['location'] = place['geometry']['location']
obj['name'] = place['name']
obj['place_id'] = place['place_id']
ecart = distance(
lonlat(*(data['lng'], data['lat'])),
lonlat(*(place['geometry']['location']['lng'],
place['geometry']['location']['lat'])))
obj['distance'] = ecart.miles
toreturn.append(obj)
return Response(toreturn)
def create(self, validated_data):
#CALL API TO GET THE CURRENT PATIENT
now = datetime.datetime.now()
date = str(now.strftime("%Y-%m-%d"))
time = str(now.strftime("%H:%M:%S"))
tempTime = validated_data.get('time', '')
if str(tempTime) == "23:59:59":
hr = HeartRateEveryMinute(
heartRate=validated_data.get('heartRate', ''),
date=date,
time=time,
idPatient_id=10,
)
hr.save()
# return hr
else:
client = coreapi.Client()
schema = client.get("http://192.168.100.214:8000/docs")
action = ["patient", "list"]
result = client.action(schema, action)
patient = result[0]['idPatient']
hr = HeartRateEveryMinute(
heartRate=validated_data.get('heartRate', ''),
date=validated_data.get('date', ''),
time=validated_data.get('time', ''),
idPatient_id=patient,
)
hr.save()
return hr
def readRFID():
arduino = serial.Serial('/dev/ttyUSB1/', 9600, timeout=.1)
store = ""
value = ""
while(True):
try:
store = arduino.readline()
time.sleep(1)
store = arduino.readline()
## print(store)
value = store.decode('utf-8')
if value != "":
print("HI")
client = coreapi.Client()
# schema = client.get("http://192.168.100.222:8000/docs")
schema = client.get("http://192.168.100.222:8000/docs")
action = ["rfid","create"]
params = {
"RFIDnumber": value,
}
result = client.action(schema,action,params=params)
except:
print("Cannot read arduino")
def sendData():
threading.Timer(1.0, sendData).start()
client = coreapi.Client()
tempSchema = client.get("http://192.168.100.222:8000/docs")
tempAction = ['temperature','create']
tempParams = {
"temperature":33.1,
"date": "2018-10-10",
"time": "23:59:59"
}
hrResult = client.action(tempSchema, tempAction, params = tempParams)
hrAction = ['heartrate','create']
hrParams = {
"heartRate": 73,
"date": "2018-10-10",
"time": "23:59:59"
}
hrResult = client.action(tempSchema, hrAction, params = hrParams)
posAction = ['position','create']
posParams = {
"position": "back",
"date": "2018-10-10",
"time": "23:59:59",
}
def inventory_list(request):
client = coreapi.Client()
schema = client.get("http://35.227.154.9:8080/api-doc/")
action = ["stock", "list"]
params = {
"page": '1',
# "quantity": ...,
# "part": ...,
# "location": ...,
# "min_stock": ...,
# "max_stock": ...,
}
result = client.action(schema, action, params=params)
#Iterates over list to access OrderedDict() object.
for item in result:
print(item['url'])
print("--------------")
###Screwed this up. Just use the damn OrderedDict(...)
###by iterating the list..
#Removes OrderedDict(...)
#data = json.dumps(result)
#Removes Unnecessary []
#data = json.loads(data[1:-1])
return render(request, 'inventory/createItem.html')
def login(opt, client, schema):
while True:
username = input('username:'******'password:'******'username or password not valid')
continue
params = {'username': username, 'password': password}
try:
action = ['login', 'create']
result = client.action(schema, action, params)
action = ['token', 'create']
result = client.action(schema, action, params)
print(formHeader())
except Exception as e:
print(e)
print('validation failed')
return False
global SESSION_TOKEN
SESSION_TOKEN = result['token']
print(SESSION_TOKEN, formHeader())
auth = coreapi.auth.TokenAuthentication(scheme='OAUTH',
token=SESSION_TOKEN)
client = coreapi.Client(auth=auth)
print(username + ' logged in')
return True #{'client':client}
def get_band_from_DB(self,fieldname,instrumentid,debug=False):
tablename = 'photometricbands'
if debug: tstart = time.time()
auth = coreapi.auth.BasicAuthentication(
username=self.dblogin,
password=self.dbpassword,
)
client = coreapi.Client(auth=auth)
try:
schema = client.get('%s%s?limit=100000'%(self.dburl,tablename))
except:
raise RuntimeError('Error : couldn\'t get schema!')
idlist,namelist,instlist = [],[],[]
for i in range(len(schema['results'])):
namelist += [schema['results'][i]['name']]
idlist += [schema['results'][i]['url']]
instlist += [schema['results'][i]['instrument']]
if debug:
print('GET took %.1f seconds'%(time.time()-tstart))
if not len(np.where((np.array(namelist) == fieldname) &
(np.array(instlist) == instrumentid))[0]): return(None)
return(np.array(idlist)[np.where((np.array(namelist) == fieldname) &
(np.array(instlist) == instrumentid))][0])
def __init__(self, token=None, domain=None):
if token is None:
token = os.getenv(self.CARAVAGGIO_TOKEN, None)
if token is None:
raise EnvironmentError("No {0} was found in the environment"
". Please, make sure you have define"
" the {0} environment.".format(
self.CARAVAGGIO_TOKEN))
if domain is None:
domain = os.getenv(self.CARAVAGGIO_DOMAIN, self.default_domain)
self.domain = domain
auth = coreapi.auth.TokenAuthentication(scheme="Token", token=token)
# Codecs are responsible for decoding a bytestring into a Document
# instance, or for encoding a Document instance into a bytestring.
decoders = list(codec_plugins.decoders.values())
self.client = coreapi.Client(decoders=decoders, auth=auth)
if self.domain not in self.schemas:
self.schema = self.client.get('{}{}swagger/?format=openapi'.format(
self.domain, "/" if not self.domain.endswith("/") else ""))
self.schemas[self.domain] = self.schema
else:
self.schema = self.schemas[self.domain]
def run_client():
t = True
client = coreapi.Client()
try:
schema = client.get('http://fas.42king.com:8197/api/schema')
print('Welcome to Krby CLI Client!')
display(None, None, None)
except Exception as e:
print(e)
print('server down for maintenence')
t = False
result = None
while t:
opt = input('$> ').split()
opt.append(None)
if opt[0] in func:
result = func[opt[0]](opt[1], client, schema)
if result == False:
print('there was an error with your request')
continue
elif isinstance(result, dict):
print('client updated with auth')
client = result['client']
schema = client.get('http://fas.42king.com:8197/api/schema')
elif result == 'exit':
t = False
print('Goodbye!')
def dispatch(self, request, *args, **kwargs):
"""Search and show results. If none, show near words."""
context = self.get_context_data(**kwargs)
query = request.GET.get('q', None)
lex_code = request.GET.get('l', '')
if query is not None:
client = coreapi.Client()
schema = client.get(settings.LINGUATEC_LEXICON_API_URL)
querystring_args = {'q': query, 'l': lex_code}
url = schema['words'] + 'search/?' + \
urllib.parse.urlencode(querystring_args)
response = client.get(url)
results = response["results"]
for word in results:
self.groupby_word_entries(word)
context.update({
'query': query,
'results': results,
'selected_lexicon': lex_code,
'lexicons': get_lexicons(),
})
if response["count"] == 0:
context["near_words"] = utils.retrieve_near_words(query, lex_code)
return TemplateResponse(request, 'linguatec_lexicon_frontend/search_results.html', context)
def getZTFPhotometry(self,sc):
ztfurl = '%s/?format=json&sort_value=jd&sort_order=desc&cone=%.7f%%2C%.7f%%2C0.0014'%(
self.ztfurl,sc.ra.deg,sc.dec.deg)
client = coreapi.Client()
schema = client.get(ztfurl)
if 'results' in schema.keys():
PhotUploadAll = {"mjdmatchmin":0.01,
"clobber":self.clobber}
photometrydict = {'instrument':'ZTF-Cam',
'obs_group':'ZTF',
'photdata':{}}
for i in range(len(schema['results'])):
phot = schema['results'][i]['candidate']
PhotUploadDict = {'obs_date':jd_to_date(phot['jd']),
'band':'%s-ZTF'%phot['filter'],
'groups':[]}
PhotUploadDict['mag'] = phot['magap']
PhotUploadDict['mag_err'] = phot['sigmagap']
PhotUploadDict['flux'] = None
PhotUploadDict['flux_err'] = None
PhotUploadDict['data_quality'] = 0
PhotUploadDict['forced'] = None
PhotUploadDict['flux_zero_point'] = None
PhotUploadDict['discovery_point'] = 0
photometrydict['photdata']['%s_%i'%(jd_to_date(phot['jd']),i)] = PhotUploadDict
PhotUploadAll['ZTF'] = photometrydict
return PhotUploadAll
else: return None
def test_api_update_ed_signed():
''' update ed_signed via API
requires PVZDweb runnning on dev database (no fixture yet for this)
'''
fn = Path(ed_path(22, dir=fixture_testdata_basedir()))
with fn.open('rb') as fd:
django_file = django.core.files.File(fd)
mds = MDstatement()
count = MDstatement.objects.filter(
entityID='https://idp22.identinetics.com/idp.xml',
statusgroup=STATUSGROUP_FRONTEND)
if count:
mds = MDstatement.objects.get(
entityID='https://idp22.identinetics.com/idp.xml',
statusgroup=STATUSGROUP_FRONTEND)
mds.ed_signed = ''
mds.save()
else:
django_file = django.core.files.File(fd)
mds = MDstatement()
mds.ed_file_upload.save(fn.name, django_file, save=True)
update_id = mds.id
client = coreapi.Client()
schema = client.get("http://localhost:8000/docs/")
action = ["mdstatement", "partial_update"]
params = {
"id": update_id,
"admin_note": "Updated ed_signed from REST API",
"ed_signed": fn.read_text(),
}
result = client.action(schema, action, params=params)
def main():
# Parse arguments
args = parse_args()
# Globals
global client
client = coreapi.Client()
global codec
codec = coreapi.codecs.CoreJSONCodec()
global cwd
cwd = os.getcwd()
global devnull
devnull = subprocess.DEVNULL
global jaspar_url
jaspar_url = "https://testjaspar.uio.no/"
global clusters_file_ext
clusters_file_ext = ".clusters.json"
global pfam_file_ext
pfam_file_ext = ".pfam.json"
global profiles_file_ext
profiles_file_ext = ".profiles.json"
global uniprot_file_ext
uniprot_file_ext = ".uniprot.json"
out_dir = os.path.abspath(args.o)
# Get files
get_files(out_dir)
def __init__(self, api_url, username=None, password=None):
""" Set up authentication using basic authentication.
"""
# Create session and give it with auth
self.session = requests.Session()
if username is not None and password is not None:
self.session.auth = (username, password)
# Tell Tantalus we're sending JSON
self.session.headers.update({"content-type": "application/json"})
# Record the base API URL
self.base_api_url = api_url
self.document_url = self.base_api_url + "swagger/?format=openapi"
auth = None
if username is not None and password is not None:
auth = coreapi.auth.BasicAuthentication(username=username,
password=password)
decoders = [OpenAPICodec(), JSONCodec()]
self.coreapi_client = coreapi.Client(auth=auth, decoders=decoders)
self.coreapi_schema = self.coreapi_client.get(self.document_url,
format="openapi")
def book_list(request):
auth = coreapi.auth.BasicAuthentication(
username='******',
password='******'
)
client = coreapi.Client(auth=auth)
schema = client.get('http://localhost:8000/book/')
# users = client.action(schema, ['users', 'list'])
# users = client.action(schema)
print('----------------pld----------------------')
od = OrderedDict(schema)
r = od['results']
# print(schema)
result_list: list = list()
for key in r:
author = key['author']
print(key['title'])
print(key['summary'])
print(key['isbn'])
print(key['author'])
result_list.append((key['title'], key['author'], key['summary'], key['isbn']))
print(' .......')
print('--------------------------------------')
paginator = Paginator(result_list, 30) # Show 30 contacts per page.
page_number = request.GET.get('page')
page_obj = paginator.get_page(page_number)
return render(request, "showstore/book_list.html", {'page_obj': page_obj})
def main():
parser = argparse.ArgumentParser(
description="Use OMA api to download OMA groups by their id")
parser.add_argument(
"-i",
"--ids",
type=str,
nargs='+',
default=None,
required=True,
help="group ids, needs at least one, multiple divided by spaces")
parser.add_argument(
"-o",
"--outpath",
type=str,
default='.',
help=
"folder where fasta files will be written, all fasta file will be named after their "
"group id")
args = parser.parse_args()
client = coreapi.Client()
schema = client.get("https://omabrowser.org/api/docs")
for groupid in args.ids:
print('Getting: ' + groupid)
getomagroup(groupid, args.outpath, client, schema)
print('done!')
def __init__(self) -> None:
super().__init__()
self.client = coreapi.Client(auth=coreapi.auth.BasicAuthentication(
username=os.getenv('API_NAME'),
password=os.getenv('API_PASS')
))
self.schema = self.client.get(os.getenv('API_URL'))
def get_client(format=None):
codecs = get_installed_codecs()
if format is None:
decoders = list(codecs.values())
else:
decoders = [codecs[format]]
return coreapi.Client(decoders=decoders)
def home(request):
client = coreapi.Client()
schema = client.get('http://127.0.0.1:8000/pool/poolservices/')
# pools = client.action(schema, ['post'], params={"PoolService":{"method":"get"}})
return render(request, 'pool_2/index.html', {
'id': 2,
# 'text': pools
})
def __init__(self, url, username, password):
# Basic auth only
auth = coreapi.auth.BasicAuthentication(
username=username,
password=password
)
self.client = coreapi.Client(auth=auth)
self.url = url
def create_infra_client():
credentials = {
settings.INFRA_IP: 'Token {}'.format(settings.INFRA_AUTH_TOKEN)
}
transports = [coreapi.transports.HTTPTransport(credentials=credentials)]
client = coreapi.Client(transports=transports)
schema = client.get(settings.INFRA_API_SCHEMA_ADDRESS)
return client, schema
def __init__(self, token=None):
# Default to environment variable, if no token was provided.
if token is None:
token = os.environ['HEROKU_TOKEN']
self.__token = token
self.client = coreapi.Client(auth=self)
self.schema = self.load(self.schema_url)
def save_video(url, languages):
client = coreapi.Client()
normalized_url = query_string_remove(url)
schema = client.get(normalized_url)
soup = BeautifulSoup(schema, "html.parser")
video_meta_unprocessed = soup.find("div",
attrs={
"itemscope":
True,
"itemtype":
"https://schema.org/VideoObject"
})
video_meta = BeautifulSoup(str(video_meta_unprocessed), "html.parser")
duration = video_meta.find("meta", attrs={"itemprop":
"duration"})["content"]
license_url = video_meta.find("link", attrs={"itemprop":
"license"})["href"]
title = video_meta.find("meta", attrs={"itemprop": "name"})["content"]
description = video_meta.find("meta", attrs={"itemprop":
"description"})["content"]
script_unprocessed = str(soup.find("script", attrs={"data-spec": "q"}))
openIndex = script_unprocessed.index('{')
closeIndex = script_unprocessed.rindex('}')
jsonSubstring = script_unprocessed[openIndex:closeIndex + 1]
talk_meta = json.loads(jsonSubstring)["__INITIAL_DATA__"]
video_id = talk_meta["current_talk"]
url = talk_meta["url"]
viewed_count = talk_meta["viewed_count"]
event = talk_meta["event"]
speakers = []
for speaker in talk_meta["speakers"]:
name = construct_name(speaker)
speakers.append(name)
video = Video(video_id=video_id,
duration=duration,
url=url,
license_url=license_url,
title=title,
description=description,
speakers=speakers,
event=event,
viewed_count=viewed_count)
video.save()
video_serializer = VideoSerializer(video)
django_rq.enqueue(func=save_subtitles,
args=[video_id, languages],
retry=Retry(max=3, interval=[10, 30, 60]))
print(video_serializer.data)
def ajaxAddPatient(request):
firstName = request.GET.get('firstName')
middleName = request.GET.get('middleName')
lastName = request.GET.get('lastName')
birthDate = request.GET.get('birthDate')
religion = request.GET.get('religion')
minTemp = request.GET.get('minTemp')
maxTemp = request.GET.get('maxTemp')
minHeartRate = request.GET.get('minHeartRate')
maxHeartRate = request.GET.get('maxHeartRate')
contactperson = request.GET.get('contactperson')
contactNum = request.GET.get('contactNum')
bedNumber = request.GET.get('bedNumber')
bday = parse_date(birthDate)
# age = (datetime.now().date() - bday).days / 365.25
print(bday)
doctors = request.GET.getlist('doctors[]')
patient_var = Patient(firstName=firstName,
middleName=middleName,
lastName=lastName,
birthDate=birthDate,
religion=religion,
minTemp=minTemp,
maxTemp=maxTemp,
minHeartRate=minHeartRate,
maxHeartRate=maxHeartRate,
contactperson=contactperson,
contactNum=contactNum,
bedNumber_id=int(bedNumber),
status="RESERVED")
patient_var.save()
patient_bed = Patient_Table(idBeds_id=bedNumber,
idPatient_id=patient_var.pk)
patient_bed.save()
client = coreapi.Client()
schema = client.get("http://192.168.100.214:8000/docs")
action = ["patient", "create"]
params = {"idPatient": patient_var.pk}
result = client.action(schema, action, params=params)
for x in range(0, len(doctors)):
patient_doctor = Patient_Doctors(Doctor_id=doctors[x],
Patient_id=patient_var.pk)
patient_doctor.save()
body = "Your patient, " + str(patient_var.firstName) + " " + str(
patient_var.lastName) + ", is now in the recovery room."
now = datetime.datetime.now()
date = now.date()
time = now.time()
news = News(body=body, date=date, time=time, idPatient_id=patient_var.pk)
news.save()
bed = Beds.objects.get(pk=bedNumber)
bed.bedStatus = "Occupied"
bed.save()
return HttpResponse()
def test_error(monkeypatch, document):
def mockreturn(self, request):
return MockResponse(b'{"_type": "error", "message": ["failed"]}')
monkeypatch.setattr(requests.Session, 'send', mockreturn)
client = coreapi.Client()
with pytest.raises(coreapi.exceptions.ErrorMessage):
client.action(document, ['next'])
