Exemplo n.º 1
0
	def getCorrPvArrayForGeneSymbolPair(self,geneNameLst=None):
		corrArray = None
		pvArray = None

		if len(geneNameLst) == 2:
			#retrieve SymbolValuePairDict(Dict), dictionary of Symbol and Value Pair.key is symbol, value is one list of expression values of one probeSet
			symbolList,geneIdDict,dataIdDict,ChrDict,MbDict,descDict,pTargetDescDict =correlationFunction.getTissueProbeSetXRefInfo(cursor=self.cursor,GeneNameLst=geneNameLst,TissueProbeSetFreezeId=self.tProbeSetFreezeId)	
			symbolValuepairDict =correlationFunction.getGeneSymbolTissueValueDict(cursor=self.cursor,symbolList=geneNameLst,dataIdDict=dataIdDict)
			corrArray,pvArray = correlationFunction.getCorrPvArray(cursor=self.cursor,priGeneSymbolList=geneNameLst,symbolValuepairDict=symbolValuepairDict)

		return corrArray,pvArray
Exemplo n.º 2
0
	def getTissueCorrPvArray(self,geneNameLst=None,dataIdDict=None):	
		#retrieve SymbolValuePairDict(Dict), dictionary of Symbol and Value Pair.key is symbol, value is one list of expression values of one probeSet
		symbolValuepairDict =correlationFunction.getGeneSymbolTissueValueDict(cursor=self.cursor,symbolList=geneNameLst,dataIdDict=dataIdDict)
		corrArray,pvArray = correlationFunction.getCorrPvArray(cursor=self.cursor,priGeneSymbolList=geneNameLst,symbolValuepairDict=symbolValuepairDict)
		return corrArray,pvArray