def test_entity_attribute(self):
concentration = Attribute.create_from(
name='concentration',
unit=Unit(
reference='http://purl.obolibrary.org/obo/UO_0000064'
)
)
t1 = Treatment.create_from(
entity=NamedEntity(
name='IPTG',
reference='https://hub.sd2e.org/user/sd2e/design/IPTG/1',
attributes=[
concentration
])
)
assert not t1.is_bound()
t2 = Treatment.create_from(
entity=NamedEntity(
name='IPTG',
reference='https://hub.sd2e.org/user/sd2e/design/IPTG/1',
attributes=[
concentration
])
)
assert t1 == t1
assert t1 == t2
assert t1 != {}
assert repr(
t1) == "EntityTreatment(entity=NamedEntity(name='IPTG', reference='https://hub.sd2e.org/user/sd2e/design/IPTG/1', attributes=[UnboundAttribute(name='concentration', unit=Unit(reference='http://purl.obolibrary.org/obo/UO_0000064'))]))"
def test_simple_treatment(self):
t1 = Treatment.create_from(
attribute=Attribute.create_from(
name='temperature',
value=Value(
value=1,
unit=Unit(
reference='http://purl.obolibrary.org/obo/UO_0000027')
))
)
assert t1.is_bound()
t2 = Treatment.create_from(
attribute=Attribute.create_from(
name='temperature',
value=Value(
value=1,
unit=Unit(
reference='http://purl.obolibrary.org/obo/UO_0000027')
))
)
assert t1 == t1
assert t1 == t2
assert t1 != {}
assert repr(
t1) == "AttributeTreatment(attribute=BoundAttribute(name='temperature', value=Value(value=1, unit=Unit(reference='http://purl.obolibrary.org/obo/UO_0000027'))))"
def test_entity_serialization(self):
t1 = Treatment.create_from(entity=NamedEntity(
name='M9 Glucose CAA',
reference='https://hub.sd2e.org/user/sd2e/design/M9_glucose_CAA/1'
))
t_json = json.dumps(t1, cls=TreatmentEncoder)
t2 = json.loads(t_json, cls=TreatmentDecoder)
assert t1 == t2
def test_entity(self):
t1 = Treatment.create_from(entity=NamedEntity(
name='M9 Glucose CAA',
reference='https://hub.sd2e.org/user/sd2e/design/M9_glucose_CAA/1'
))
assert t1.is_bound()
t2 = Treatment.create_from(entity=NamedEntity(
name='M9 Glucose CAA',
reference='https://hub.sd2e.org/user/sd2e/design/M9_glucose_CAA/1'
))
assert t1 == t1
assert t1 == t2
assert t1 != {}
assert repr(
t1) == "EntityTreatment(entity=NamedEntity(name='M9 Glucose CAA', reference='https://hub.sd2e.org/user/sd2e/design/M9_glucose_CAA/1'))"
def test_attribute_serialization(self):
timepoint = Attribute.create_from(
name='timepoint',
unit=Unit(reference='http://purl.obolibrary.org/obo/UO_0000027')
)
t1 = Treatment.create_from(attribute=timepoint)
t_json = json.dumps(t1, cls=TreatmentEncoder)
t2 = json.loads(t_json, cls=TreatmentDecoder)
assert t1 == t2
def test_attribute(self):
t1 = Treatment.create_from(
attribute=Attribute.create_from(
name='timepoint',
unit=Unit(
reference='http://purl.obolibrary.org/obo/UO_0000027')))
assert not t1.is_bound()
t2 = Treatment.create_from(
attribute=Attribute.create_from(
name='timepoint',
unit=Unit(
reference='http://purl.obolibrary.org/obo/UO_0000027')))
assert t1 == t1
assert t1 == t2
assert t1 != {}
assert repr(
t1) == "AttributeTreatment(attribute=UnboundAttribute(name='timepoint', unit=Unit(reference='http://purl.obolibrary.org/obo/UO_0000027')))"
def test_simple_treatment_serialization(self):
t1 = Treatment.create_from(
attribute=Attribute.create_from(
name='temperature',
value=Value(
value=1,
unit=Unit(
reference='http://purl.obolibrary.org/obo/UO_0000027')
))
)
t_json = json.dumps(t1, cls=TreatmentEncoder)
t2 = json.loads(t_json, cls=TreatmentDecoder)
assert t1 == t2
def test_entity_attribute_serialization(self):
concentration = Attribute.create_from(
name='concentration',
unit=Unit(
reference='http://purl.obolibrary.org/obo/UO_0000064')
)
t1 = Treatment.create_from(
entity=NamedEntity(
name='IPTG',
reference='https://hub.sd2e.org/user/sd2e/design/IPTG/1',
attributes=[
concentration
])
)
t_json = json.dumps(t1, cls=TreatmentEncoder)
t2 = json.loads(t_json, cls=TreatmentDecoder)
assert t1 == t2