def intLooks(inps):
inWidth = getWidth(inps.input + '.xml')
inLength = getLength(inps.input + '.xml')
outWidth = int(inWidth / inps.rlks)
outLength = int(inLength / inps.alks)
#run program here
cmd = '$INSAR_ZERODOP_BIN/look {} {} {} {} {} 4 0 0'.format(
inps.input, inps.output, inWidth, inps.rlks, inps.alks)
runCmd(cmd)
#get xml file for interferogram
create_xml(inps.output, outWidth, outLength, 'int')
def ampLooks(inps):
inWidth = getWidth(inps.input + '.xml')
inLength = getLength(inps.input + '.xml')
outWidth = int(inWidth / inps.rlks)
outLength = int(inLength / inps.alks)
#run it
#cmd = 'echo -e "{}\n{}\n{} {}\n{} {}\n" | $INSAR_ZERODOP_BIN/rilooks'.format(inps.input, inps.output, inWidth, inLength, inps.rlks, inps.alks)
#it seems that echo does not require -e in this situation, strange
cmd = '$INSAR_ZERODOP_BIN/look {} {} {} {} {} 4 1 0'.format(
inps.input, inps.output, inWidth, inps.rlks, inps.alks)
runCmd(cmd)
#get xml file for amplitude image
create_xml(inps.output, outWidth, outLength, 'amp')
def runSimAmp(hgtName='z.rdr', simName='simamp.rdr'):
#get width from hgt file
hgtImage = isceobj.createImage()
hgtImage.load(hgtName + '.xml')
hgtImage.setAccessMode('read')
hgtImage.createImage()
hgtWidth = hgtImage.getWidth()
hgtLength = hgtImage.getLength()
hgtImage.finalizeImage()
#run simamp
cmd = "$INSAR_ZERODOP_BIN/simamp {} {} {} 3.0 100.0".format(
hgtName, simName, hgtWidth)
#print("{}".format(cmd))
runCmd(cmd)
#create xml file of simamp.rdr
create_xml(simName, hgtWidth, hgtLength, 'float')
parser.print_help()
sys.exit(1)
else:
return parser.parse_args()
if __name__ == '__main__':
inps = cmdLineParse()
with open(inps.mframe, 'rb') as fid:
masterFrame = pickle.load(fid)
slantRangePixelSpacing = inps.rlks * 0.5 * SPEED_OF_LIGHT / masterFrame.rangeSamplingRate
radarWavelength = masterFrame.radarWavelegth
intfWidth = getWidth(inps.intf + '.xml')
intfLength = getLength(inps.intf + '.xml')
#run it
cmd = "$INSAR_ZERODOP_BIN/flat {} {} {} {} {}".format(
inps.intf, inps.rgoff, inps.dintf, slantRangePixelSpacing,
radarWavelength)
#print("{}".format(cmd))
runCmd(cmd)
#get xml file for interferogram
create_xml(inps.dintf, intfWidth, intfLength, 'int')
#./flat.py -m 20130927.slc.pck -i 20130927-20141211.int -r 20130927-20141211_rg.off -d diff_20130927-20141211.int
outframe.getInstrument().setRangeSamplingRate(frame2.instrument.rangeSamplingRate)
outframe.getInstrument().setRangePixelSize(frame2.getInstrument().getRangePixelSize())
#outframe.getInstrument().setRadarWavelength(SPEED_OF_LIGHT/centerfreq)
#outframe.getInstrument().setPulseLength(math.fabs(overlapbandwidth/frame.instrument.chirpSlope))
#remove orignal slc, leaving only filtered slc
os.remove('tmp.slc')
#output new frame pickle file
with open(inps.frame, 'wb') as f:
pickle.dump(outframe, f)
create_xml(inps.slc, outWidth, outLength, 'slc')
range_offset = -1.0 * rangeOffset[inps.sn]
else:
range_offset = 0.0
cmd = '$INSAR_ZERODOP_BIN/rg_filter {inputf} {outputf} {nrg} {bw} {bc} {nfilter} {nfft} {beta} {zero_cf} {offset}> /dev/null'.format(
inputf = inps.islc,
outputf = inps.oslc,
nrg = iframe.getNumberOfSamples(),
bw = rgbandwidth / 3.0 / iframe.instrument.rangeSamplingRate,
bc = bc0,
nfilter = 129,
nfft = 512,
beta = 0.1,
zero_cf = 0,
offset = range_offset
)
runCmd(cmd)
create_xml(inps.oslc, iframe.getNumberOfSamples(), iframe.getNumberOfLines(), 'slc')
iframe.instrument.setPulseLength(iframe.instrument.pulseLength/3.0)
iframe.getInstrument().setRadarWavelength(float(SPEED_OF_LIGHT/fx))
if inps.oframe != 'NotSpecified':
with open(inps.oframe, 'wb') as f:
pickle.dump(iframe, f)
outpck.setNumberOfSamples(outWidth * rlks)
outpck.setNumberOfLines(outLength * alks)
outpck.startingRange = outStartingRange
outpck.setFarRange(outFarRange)
outpck.setSensingStart(outSensingStart)
outpck.setSensingStop(outSensingStop)
#sensing mid
outpck.setSensingMid(outpck.getSensingStart() + datetime.timedelta(
seconds=(outpck.getSensingStop() -
outpck.getSensingStart()).total_seconds() / 2.0))
with open(inps.frameoutput, 'wb') as f:
pickle.dump(outpck, f)
#create XML file for mosaicked interferogram
create_xml(infOutput, outWidth, outLength, 'int')
#create XML file for mosaicked amplitude
create_xml(ampOutput, outWidth, outLength, 'amp')
#######################################################################################
#adjust phase of subsequent subswath interferograms here
#WARNING: 1. NOW ONLY SUPPORT THE CASE THAT ALL SUBSWATH RANGE SAMPLING INTERVALS ARE THE
# SAME.
# 2. phase difference calculation should also be able to work for ScanSAR-stripmap
# interferometry, although the overlap area may not be the center of
# stripmap swath.
#parameters for this part
nrlks2 = inps.drlks
nalks2 = inps.dalks
corth = 0.85
beta=0.1)
runCmd(cmd)
#remove orignal slc, leaving only filtered slc
os.remove('tmp.slc')
#output new frame pickle file
outframe = mframe
outframe.getInstrument().setRadarWavelength(SPEED_OF_LIGHT /
centerfreq)
outframe.getInstrument().setPulseLength(
math.fabs(overlapbandwidth / mframe.instrument.chirpSlope))
with open(inps.mframe, 'wb') as f:
pickle.dump(outframe, f)
create_xml(inps.mslc, mframe.getNumberOfSamples(),
mframe.getNumberOfLines(), 'slc')
#2. filtering slave
if math.fabs(centerfreq2 - centerfreq) < 1.0 and (bandwidth2 -
1.0) < overlapbandwidth:
print('no need to range filter {}. nothing is done by this program.'.
format(inps.sslc))
else:
os.rename(inps.sslc, 'tmp.slc')
#os.remove(inps.sslc + '.par.xml')
os.remove(inps.sslc + '.pck')
os.remove(inps.sslc + '.xml')
os.remove(inps.sslc + '.vrt')
cmd = '$INSAR_ZERODOP_BIN/rg_filter {inputf} {outputf} {nrg} {bw} {bc} {nfilter} {nfft} {beta}'.format(
inputf='tmp.slc',
azimuthOffset[i] += azimuthOffset2[j]
#resample each frame
rinfs = []
crinfs = []
for i, inf in enumerate(infs):
infBase = os.path.splitext(ntpath.basename(inf))[0]
infExt = os.path.splitext(ntpath.basename(inf))[1]
rinfs.append("{}_{}{}".format(infBase, i, infExt))
crinfs.append("{}_{}_corrected{}".format(infBase, i, infExt))
if i == 0:
os.symlink(inf, rinfs[i])
#create xml file for rectified interferogram
create_xml(rinfs[i], int(width[i]/rlks), int(length[i]/alks), file_type)
if inps.phc == 1:
os.symlink(inf, crinfs[i])
#create xml file for corrected interferogram
create_xml(crinfs[i], int(width[i]/rlks), int(length[i]/alks), file_type)
continue
rangeOffsetFrac = rangeOffset[i] - int(rangeOffset[i])
azimuthOffsetFrac = azimuthOffset[i] - int(azimuthOffset[i])
if file_type == 'int' or file_type == 'amp':
rectInputInf = '''Input Image File Name (-) = {inFile} ! dimension of file to be rectified
Output Image File Name (-) = {outFile} ! dimension of output
Input Dimensions (-) = {inWidth} {inLength} ! across, down
Output Dimensions (-) = {outWidth} {outLength} ! across, down
Affine Matrix Row 1 (-) = {m11} {m12} ! a b
parser.print_help()
sys.exit(1)
else:
return parser.parse_args()
if __name__ == '__main__':
inps = cmdLineParse()
#get information
masterWidth = getWidth(inps.master + '.xml')
masterLength = getLength(inps.master + '.xml')
#run interf
cmd = "$INSAR_ZERODOP_BIN/interf {} {} {} {} {}".format(inps.master, inps.slave, inps.intf, inps.amp, masterWidth)
#print("{}".format(cmd))
runCmd(cmd)
#get xml file for interferogram
create_xml(inps.intf, masterWidth, masterLength, 'int')
#get xml file for amplitude image
create_xml(inps.amp, masterWidth, masterLength, 'amp')
#./interf.py -m 20130927.slc -s 20141211.slc -i 20130927-20141211.int -a 20130927-20141211.amp
print('mean value of phase difference: {}'.format(mv))
flag2 = (unwl != 0) * (unwu != 0)
index2 = np.nonzero(flag2)
#phase for adjustment
unwd = ((unwl - unwu)[index2] - mv) / (2.0 * np.pi)
unw_adj = np.around(unwd) * (2.0 * np.pi)
#ajust phase of upper band
unwu[index2] += unw_adj
unw_diff = (unwl - unwu)
print('after adjustment:')
print('max phase difference: {}'.format(np.amax(unw_diff)))
print('min phase difference: {}'.format(np.amin(unw_diff)))
#get two band rmg file of ajusted upper band
unwc = np.zeros((length * 2, width))
unwc[0:length * 2:2, :] = (np.fromfile(inps.unwu,
dtype=np.float32).reshape(
length * 2,
width))[0:length * 2:2, :]
unwc[1:length * 2:2, :] = unwu
#output
unwc.astype(np.float32).tofile(inps.unwc)
#create xml
create_xml(inps.unwc, width, length, 'unw')
def runFilter(inps):
logger.info("Applying power-spectral filter")
#get width from the header file of input interferogram
width = getWidth(inps.intf + '.xml')
length = getLength(inps.intf + '.xml')
if shutil.which('psfilt1') != None:
cmd = "psfilt1 {int} {filtint} {width} {filterstrength} 64 16".format(
int = inps.intf,
filtint = inps.fintf,
width = width,
filterstrength = inps.alpha
)
runCmd(cmd)
#get xml file for interferogram
create_xml(inps.fintf, width, length, 'int')
else:
#create flattened interferogram
intImage = isceobj.createIntImage()
intImage.setFilename(inps.intf)
intImage.setWidth(width)
intImage.setAccessMode('read')
intImage.createImage()
#create the filtered interferogram
filtImage = isceobj.createIntImage()
filtImage.setFilename(inps.fintf)
filtImage.setWidth(width)
filtImage.setAccessMode('write')
filtImage.createImage()
#create filter and run it
objFilter = Filter()
objFilter.wireInputPort(name='interferogram',object=intImage)
objFilter.wireOutputPort(name='filtered interferogram',object=filtImage)
objFilter.goldsteinWerner(alpha=inps.alpha)
intImage.finalizeImage()
filtImage.finalizeImage()
del filtImage
#recreate filt image to read
filtImage = isceobj.createIntImage()
filtImage.setFilename(inps.fintf)
filtImage.setWidth(width)
filtImage.setAccessMode('read')
filtImage.createImage()
#create amplitude image
ampImage = isceobj.createAmpImage()
ampImage.setFilename(inps.amp)
ampImage.setWidth(width)
ampImage.setAccessMode('read')
ampImage.createImage()
#create phase sigma correlation file here
phsig_tmp = 'tmp.phsig'
phsigImage = isceobj.createImage()
phsigImage.setFilename(phsig_tmp)
phsigImage.setWidth(width)
phsigImage.dataType='FLOAT'
phsigImage.bands = 1
phsigImage.setImageType('cor')#the type in this case is not for mdx.py displaying but for geocoding method
phsigImage.setAccessMode('write')
phsigImage.createImage()
#create icu and run it
icuObj = Icu(name='insarapp_filter_icu')
icuObj.configure()
icuObj.unwrappingFlag = False
icuObj.icu(intImage = filtImage, ampImage=ampImage, phsigImage=phsigImage)
phsigImage.renderHdr()
filtImage.finalizeImage()
ampImage.finalizeImage()
phsigImage.finalizeImage()
# #add an amplitude channel to phsig file
# cmd = "imageMath.py -e='sqrt(a_0*a_1)*(b!=0);b' --a={amp} --b={phsig_tmp} -o {phsig} -s BIL".format(
# amp = inps.amp,
# phsig_tmp = phsig_tmp,
# phsig = inps.phsig
# )
#add an amplitude channel to phsig file
cmd = "imageMath.py -e='sqrt(a_0*a_1)*(b!=0);b' --a={amp} --b={phsig_tmp} -o {phsig} -s BIL".format(
amp = inps.amp,
phsig_tmp = phsig_tmp,
phsig = inps.phsig
)
runCmd(cmd)
#remove the original phsig file
os.remove(phsig_tmp)
os.remove(phsig_tmp + '.xml')
os.remove(phsig_tmp + '.vrt')
#rename original filtered interferogram
filt_tmp = 'filt_tmp.int'
os.rename(inps.fintf, filt_tmp)
os.rename(inps.fintf + '.xml', filt_tmp + '.xml')
os.rename(inps.fintf + '.vrt', filt_tmp + '.vrt')
#do the numpy calculations
#replace the magnitude of the filtered interferogram with magnitude of original interferogram
#mask output file using layover mask (values 2 and 3).
# cmd = "imageMath.py -e='a/(abs(a)+(abs(a)==0))*abs(b)*(c<2)' --a={0} --b={1} --c={2} -t CFLOAT -o={3}".format(
# filt_tmp,
# inps.intf,
# inps.msk,
# inps.fintf
# )
#replacing magnitude is not good for phase unwrapping using snaphu
cmd = "imageMath.py -e='a*(b<2)' --a={0} --b={1} -t CFLOAT -o={2}".format(
filt_tmp,
inps.msk,
inps.fintf
)
runCmd(cmd)
#remove the original filtered interferogram
os.remove(filt_tmp)
os.remove(filt_tmp + '.xml')
os.remove(filt_tmp + '.vrt')
m22=azimuthScale[i],
t1=0.0,
t2=0.0,
rlks=1,
alks=1,
format='REAL',
method='Bilinear')
rectInputFile = 'rect_with_looks_{}.in'.format(i)
with open(rectInputFile, 'w') as ff:
ff.write(rectInput)
cmd = '$INSAR_ZERODOP_BIN/rect_with_looks {}'.format(rectInputFile)
runCmd(cmd)
#create xml file
create_xml(rectPowName, rectWidth[i], rectLength[i], 'float')
#STEP 3. take looks
lookRectPowName = '{}_{}rlks_{}alks.pow'.format(
os.path.splitext(rectPowName)[0], nrlks, nalks)
lookRectWidth.append(int(rectWidth[i] / nrlks))
lookRectLength.append(int(rectLength[i] / nalks))
if inps.rlks == 1 and inps.alks == 1:
os.symlink(rectPowName, lookRectPowName)
create_xml(lookRectPowName, lookRectWidth[i], lookRectLength[i],
'float')
else:
cmd = 'looks.py -i {} -o {} -r {} -a {}'.format(
rectPowName, lookRectPowName, nrlks, nalks)
runCmd(cmd)
