def test_convert_column_name_value_to_id_multiple(self):
ohe = Mock()
ohe.transform.return_value = np.array(
[[0, 1, 0] # one hot encoding, second dimension
])
transformer = DataTransformer()
transformer._column_transform_info_list = [
ColumnTransformInfo(
column_name='x',
column_type='continuous',
transform=None,
transform_aux=None,
output_info=[SpanInfo(1, 'tanh'),
SpanInfo(3, 'softmax')],
output_dimensions=1 + 3),
ColumnTransformInfo(column_name='y',
column_type='discrete',
transform=ohe,
transform_aux=None,
output_info=[SpanInfo(2, 'softmax')],
output_dimensions=2),
ColumnTransformInfo(column_name='z',
column_type='discrete',
transform=ohe,
transform_aux=None,
output_info=[SpanInfo(2, 'softmax')],
output_dimensions=2)
]
result = transformer.convert_column_name_value_to_id('z', 'yes')
assert result['column_id'] == 2 # this is the 3rd column
assert result[
'discrete_column_id'] == 1 # this is the 2nd discrete column
assert result[
'value_id'] == 1 # this is the 1st dimension in the one hot encoding
def test_fit(self):
"""Test 'fit' on a np.ndarray with one continuous and one discrete columns.
The 'fit' method should:
- Set 'self.dataframe' to 'False'
- Set 'self._column_raw_dtypes' to the appropirate dtypes
- Use the appropriate '_fit' type for each column'
- Update 'self.output_info_list', 'self.output_dimensions' and
'self._column_transform_info_list' appropriately
Setup:
- Create DataTransformer
- Mock _fit_discrete
- Mock _fit_continuous
Input:
- raw_data = a table with one continuous and one discrete columns.
- discrete_columns = list with the name of the discrete column
Output:
- None
Side Effects:
- _fit_discrete and _fit_continuous should each be called once
- Assigns 'self._column_raw_dtypes' the appropriate dtypes
- Assigns 'self.output_info_list' the appropriate 'output_info'.
- Assigns 'self.output_dimensions' the appropriate 'output_dimensions'.
- Assigns 'self._column_transform_info_list' the appropriate 'column_transform_info'.
"""
data = pd.DataFrame({
"x": np.random.random(size=100),
"y": np.random.choice(["yes", "no"], size=100)
})
transformer = DataTransformer()
transformer._fit_continuous = Mock()
transformer._fit_continuous.return_value = ColumnTransformInfo(
column_name="x",
column_type="continuous",
transform=None,
transform_aux=None,
output_info=[SpanInfo(1, 'tanh'),
SpanInfo(3, 'softmax')],
output_dimensions=1 + 3)
transformer._fit_discrete = Mock()
transformer._fit_discrete.return_value = ColumnTransformInfo(
column_name="y",
column_type="discrete",
transform=None,
transform_aux=None,
output_info=[SpanInfo(2, 'softmax')],
output_dimensions=2)
transformer.fit(data, discrete_columns=["y"])
transformer._fit_discrete.assert_called_once()
transformer._fit_continuous.assert_called_once()
assert transformer.output_dimensions == 6
def test_fit(self):
"""Test ``fit`` on a np.ndarray with one continuous and one discrete columns.
The ``fit`` method should:
- Set ``self.dataframe`` to ``False``.
- Set ``self._column_raw_dtypes`` to the appropirate dtypes.
- Use the appropriate ``_fit`` type for each column.
- Update ``self.output_info_list``, ``self.output_dimensions`` and
``self._column_transform_info_list`` appropriately.
Setup:
- Create ``DataTransformer``.
- Mock ``_fit_discrete``.
- Mock ``_fit_continuous``.
Input:
- A table with one continuous and one discrete columns.
- A list with the name of the discrete column.
Side Effects:
- ``_fit_discrete`` and ``_fit_continuous`` should each be called once.
- Assigns ``self._column_raw_dtypes`` the appropriate dtypes.
- Assigns ``self.output_info_list`` the appropriate ``output_info``.
- Assigns ``self.output_dimensions`` the appropriate ``output_dimensions``.
- Assigns ``self._column_transform_info_list`` the appropriate
``column_transform_info``.
"""
# Setup
transformer = DataTransformer()
transformer._fit_continuous = Mock()
transformer._fit_continuous.return_value = ColumnTransformInfo(
column_name='x',
column_type='continuous',
transform=None,
output_info=[SpanInfo(1, 'tanh'),
SpanInfo(3, 'softmax')],
output_dimensions=1 + 3)
transformer._fit_discrete = Mock()
transformer._fit_discrete.return_value = ColumnTransformInfo(
column_name='y',
column_type='discrete',
transform=None,
output_info=[SpanInfo(2, 'softmax')],
output_dimensions=2)
data = pd.DataFrame({
'x': np.random.random(size=100),
'y': np.random.choice(['yes', 'no'], size=100)
})
# Run
transformer.fit(data, discrete_columns=['y'])
# Assert
transformer._fit_discrete.assert_called_once()
transformer._fit_continuous.assert_called_once()
assert transformer.output_dimensions == 6
def test_convert_column_name_value_to_id(self):
"""Test ``convert_column_name_value_to_id`` on a simple ``_column_transform_info_list``.
Tests that the appropriate indexes are returned when a table of three columns,
discrete, continuous, discrete, is passed as '_column_transform_info_list'.
Setup:
- Mock ``_column_transform_info_list``.
Input:
- column_name = the name of a discrete column
- value = the categorical value
Output:
- dictionary containing:
- ``discrete_column_id`` = the index of the target column,
when considering only discrete columns
- ``column_id`` = the index of the target column
(e.g. 3 = the third column in the data)
- ``value_id`` = the index of the indicator value in the one-hot encoding
"""
# Setup
ohe = Mock()
ohe.transform.return_value = pd.DataFrame(
[[0, 1] # one hot encoding, second dimension
])
transformer = DataTransformer()
transformer._column_transform_info_list = [
ColumnTransformInfo(
column_name='x',
column_type='continuous',
transform=None,
output_info=[SpanInfo(1, 'tanh'),
SpanInfo(3, 'softmax')],
output_dimensions=1 + 3),
ColumnTransformInfo(column_name='y',
column_type='discrete',
transform=ohe,
output_info=[SpanInfo(2, 'softmax')],
output_dimensions=2)
]
# Run
result = transformer.convert_column_name_value_to_id('y', 'yes')
# Assert
assert result['column_id'] == 1 # this is the 2nd column
assert result[
'discrete_column_id'] == 0 # this is the 1st discrete column
assert result[
'value_id'] == 1 # this is the 2nd dimension in the one hot encoding
def test__transform_continuous(self, MockBGM):
"""Test ``_transform_continuous``.
Setup:
- Mock the ``BayesGMMTransformer`` with the transform method returning
some dataframe.
- Create ``DataTransformer``.
Input:
- ``ColumnTransformInfo`` object.
- A dataframe containing a continuous column.
Output:
- A np.array where the first column contains the normalized part
of the mocked transform, and the other columns are a one hot encoding
representation of the component part of the mocked transform.
"""
# Setup
bgm_instance = MockBGM.return_value
bgm_instance.transform.return_value = pd.DataFrame({
'x.normalized': [0.1, 0.2, 0.3],
'x.component': [0.0, 1.0, 1.0]
})
transformer = DataTransformer()
data = pd.DataFrame({'x': np.array([0.1, 0.3, 0.5])})
column_transform_info = ColumnTransformInfo(
column_name='x',
column_type='continuous',
transform=bgm_instance,
output_info=[SpanInfo(1, 'tanh'),
SpanInfo(3, 'softmax')],
output_dimensions=1 + 3)
# Run
result = transformer._transform_continuous(column_transform_info, data)
# Assert
expected = np.array([
[0.1, 1, 0, 0],
[0.2, 0, 1, 0],
[0.3, 0, 1, 0],
])
np.testing.assert_array_equal(result, expected)
def test_transform(self):
"""Test 'transform' on a dataframe with one continuous and one discrete columns.
It should use the appropriate '_transform' type for each column and should return
them concanenated appropriately.
Setup:
- Mock _column_transform_info_list
- Mock _transform_discrete
- Mock _transform_continuous
Input:
- raw_data = a table with one continuous and one discrete columns.
Output:
- numpy array containing the transformed two columns
Side Effects:
- _transform_discrete and _transform_continuous should each be called once.
"""
data = pd.DataFrame({
"x": np.array([0.1, 0.3, 0.5]),
"y": np.array(["yes", "yes", "no"])
})
transformer = DataTransformer()
transformer._column_transform_info_list = [
ColumnTransformInfo(
column_name="x",
column_type="continuous",
transform=None,
transform_aux=None,
output_info=[SpanInfo(1, 'tanh'),
SpanInfo(3, 'softmax')],
output_dimensions=1 + 3),
ColumnTransformInfo(column_name="y",
column_type="discrete",
transform=None,
transform_aux=None,
output_info=[SpanInfo(2, 'softmax')],
output_dimensions=2)
]
transformer._transform_continuous = Mock()
selected_normalized_value = np.array([[0.1], [0.3], [0.5]])
selected_component_onehot = np.array([
[1, 0, 0],
[1, 0, 0],
[1, 0, 0],
])
return_value = (selected_normalized_value, selected_component_onehot)
transformer._transform_continuous.return_value = return_value
transformer._transform_discrete = Mock()
transformer._transform_discrete.return_value = [
np.array([
[0, 1],
[0, 1],
[1, 0],
])
]
result = transformer.transform(data)
transformer._transform_continuous.assert_called_once()
transformer._transform_discrete.assert_called_once()
expected = np.array([
[0.1, 1, 0, 0, 0, 1],
[0.3, 1, 0, 0, 0, 1],
[0.5, 1, 0, 0, 1, 0],
])
assert result.shape == (3, 6)
assert (result[:, 0] == expected[:, 0]).all(), "continuous-cdf"
assert (result[:, 1:4] == expected[:, 1:4]).all(), "continuous-softmax"
assert (result[:, 4:6] == expected[:, 4:6]).all(), "discrete"
def test__inverse_transform_continuous(self, MockBGM):
"""Test ``_inverse_transform_continuous``.
Setup:
- Create ``DataTransformer``.
- Mock the ``BayesGMMTransformer`` where:
- ``get_output_types`` returns the appropriate dictionary.
- ``reverse_transform`` returns some dataframe.
Input:
- A ``ColumnTransformInfo`` object.
- A np.ndarray where:
- The first column contains the normalized value
- The remaining columns correspond to the one-hot
- sigmas = np.ndarray of floats
- st = index of the sigmas ndarray
Output:
- Dataframe where the first column are floats and the second is a lable encoding.
Side Effects:
- The ``reverse_transform`` method should be called with a dataframe
where the first column are floats and the second is a lable encoding.
"""
# Setup
bgm_instance = MockBGM.return_value
bgm_instance.get_output_types.return_value = {
'x.normalized': 'numerical',
'x.component': 'numerical'
}
bgm_instance.reverse_transform.return_value = pd.DataFrame({
'x.normalized': [0.1, 0.2, 0.3],
'x.component': [0.0, 1.0, 1.0]
})
transformer = DataTransformer()
column_data = np.array([
[0.1, 1, 0, 0],
[0.3, 0, 1, 0],
[0.5, 0, 1, 0],
])
column_transform_info = ColumnTransformInfo(
column_name='x',
column_type='continuous',
transform=bgm_instance,
output_info=[SpanInfo(1, 'tanh'),
SpanInfo(3, 'softmax')],
output_dimensions=1 + 3)
# Run
result = transformer._inverse_transform_continuous(
column_transform_info, column_data, None, None)
# Assert
expected = pd.DataFrame({
'x.normalized': [0.1, 0.2, 0.3],
'x.component': [0.0, 1.0, 1.0]
})
np.testing.assert_array_equal(result, expected)
expected_data = pd.DataFrame({
'x.normalized': [0.1, 0.3, 0.5],
'x.component': [0, 1, 1]
})
pd.testing.assert_frame_equal(
bgm_instance.reverse_transform.call_args[0][0], expected_data)
def test_transform(self):
"""Test ``transform`` on a dataframe with one continuous and one discrete columns.
It should use the appropriate ``_transform`` type for each column and should return
them concanenated appropriately.
Setup:
- Initialize a ``DataTransformer`` with a ``column_transform_info`` detailing
a continuous and a discrete columns.
- Mock the ``_transform_discrete`` and ``_transform_continuous`` methods.
Input:
- A table with one continuous and one discrete columns.
Output:
- np.array containing the transformed columns.
Side Effects:
- ``_transform_discrete`` and ``_transform_continuous`` should each be called once.
"""
# Setup
data = pd.DataFrame({
'x': np.array([0.1, 0.3, 0.5]),
'y': np.array(['yes', 'yes', 'no'])
})
transformer = DataTransformer()
transformer._column_transform_info_list = [
ColumnTransformInfo(
column_name='x',
column_type='continuous',
transform=None,
output_info=[SpanInfo(1, 'tanh'),
SpanInfo(3, 'softmax')],
output_dimensions=1 + 3),
ColumnTransformInfo(column_name='y',
column_type='discrete',
transform=None,
output_info=[SpanInfo(2, 'softmax')],
output_dimensions=2)
]
transformer._transform_continuous = Mock()
selected_normalized_value = np.array([[0.1], [0.3], [0.5]])
selected_component_onehot = np.array([
[1, 0, 0],
[0, 1, 0],
[0, 1, 0],
])
return_value = np.concatenate(
(selected_normalized_value, selected_component_onehot), axis=1)
transformer._transform_continuous.return_value = return_value
transformer._transform_discrete = Mock()
transformer._transform_discrete.return_value = np.array([
[0, 1],
[0, 1],
[1, 0],
])
# Run
result = transformer.transform(data)
# Assert
transformer._transform_continuous.assert_called_once()
transformer._transform_discrete.assert_called_once()
expected = np.array([
[0.1, 1, 0, 0, 0, 1],
[0.3, 0, 1, 0, 0, 1],
[0.5, 0, 1, 0, 1, 0],
])
assert result.shape == (3, 6)
assert (result[:, 0] == expected[:, 0]).all(), 'continuous-cdf'
assert (result[:, 1:4] == expected[:, 1:4]).all(), 'continuous-softmax'
assert (result[:, 4:6] == expected[:, 4:6]).all(), 'discrete'