def __init__(self, conf):
self._init_keys(conf)
config = cwconfig.instance_configuration(conf.get('cubicweb-instance'))
repo = Repository(config, TasksManager(), vreg=None)
portal = Portal(CubicWebSFTPRealm(repo, conf))
portal.registerChecker(CubicWebCredentialsChecker(repo))
self.portal = portal
def __init__(self, conf):
self._init_keys(conf)
config = cwconfig.instance_configuration(conf.get('cubicweb-instance'))
repo = Repository(config, TasksManager(), vreg=None)
portal = Portal(CubicWebSFTPRealm(repo, conf))
portal.registerChecker(CubicWebCredentialsChecker(repo))
self.portal = portal
def __init__(self, instance_name, login, password):
""" Initialize the WaveImporter class.
Parameters
----------
instance_name: str (mandatory)
the name of the cubicweb instance based in the 'snapview' cube.
login: str (mandatory)
a login.
password: str (mandatory)
the corresponding password.
"""
# Create a cw session
config = cwconfig.instance_configuration(instance_name)
self.repo, self.cnx = in_memory_repo_cnx(
config, login=login, password=password)
self.session = self.repo._get_session(self.cnx.sessionid)
def __init__(self, conf):
""" Initialize the 'CubicWebSSHdFactory' class.
Parameters
----------
conf: logilab.common.configuration.Configuration (mandatory)
the server configuration options.
"""
self._init_keys(conf)
# Deal with multiple instances
cw_instance_names = conf.get("cubicweb-instance").split(":")
cw_repositories = []
for instance_name in cw_instance_names:
config = cwconfig.instance_configuration(cw_instance_names[0])
cw_repositories.append(
Repository(config, TasksManager(), vreg=None))
# A Portal associates one Realm with a collection of CredentialChecker
# instances.
portal = Portal(
CubicWebSFTPRealm(cw_instance_names, cw_repositories, conf))
portal.registerChecker(CubicWebCredentialsChecker(cw_repositories))
self.portal = portal
def __init__(self, conf):
""" Initialize the 'CubicWebSSHdFactory' class.
Parameters
----------
conf: logilab.common.configuration.Configuration (mandatory)
the server configuration options.
"""
self._init_keys(conf)
# Deal with multiple instances
cw_instance_names = conf.get("cubicweb-instance").split(":")
cw_repositories = []
for instance_name in cw_instance_names:
config = cwconfig.instance_configuration(cw_instance_names[0])
cw_repositories.append(
Repository(config, TasksManager(), vreg=None))
# A Portal associates one Realm with a collection of CredentialChecker
# instances.
portal = Portal(
CubicWebSFTPRealm(cw_instance_names, cw_repositories, conf))
portal.registerChecker(CubicWebCredentialsChecker(cw_repositories))
self.portal = portal
def run(args):
"""run the command line tool"""
try:
opts, args = getopt.getopt(args, 'hn:t:u:p:P:o:', [
'help',
'user='******'password='******'nb-times=',
'nb-threads=',
'profile',
'report-output=',
])
except Exception as ex:
print(ex)
usage(1)
repeat = 100
threads = 1
user = os.environ.get('USER', os.environ.get('LOGNAME'))
password = None
report_output = sys.stdout
prof_file = None
for opt, val in opts:
if opt in ('-h', '--help'):
usage()
if opt in ('-u', '--user'):
user = val
elif opt in ('-p', '--password'):
password = val
elif opt in ('-n', '--nb-times'):
repeat = int(val)
elif opt in ('-t', '--nb-threads'):
threads = int(val)
elif opt in ('-P', '--profile'):
prof_file = val
elif opt in ('-o', '--report-output'):
report_output = open(val, 'w')
if len(args) != 2:
usage(1)
queries = [query for query in lines(args[1]) if not query.startswith('#')]
if user is None:
user = raw_input('login: '******'password: '******'times'
else:
QueryExecutor(cnx, repeat, queries, reporter=reporter).run()
reporter.dump_report(report_output)
"user2": {
"login": "******",
"password": "******",
"group_names": ["toy_V1", "users"]
},
"user3": {
"login": "******",
"password": "******",
"group_names": ["toy", "users"]
}
}
STUDY_NAME = "toy"
CENTER_NAME = "home"
# Create a cw session
config = cwconfig.instance_configuration(instance_name)
repo, cnx = in_memory_repo_cnx(config, login=login, password=password)
session = repo._get_session(cnx.sessionid)
# Parse the file system
subjects = subject_parser(demo_path, STUDY_NAME)
scans = scan_parser(demo_path, STUDY_NAME)
questionnaires = questionnaire_parser(demo_path, STUDY_NAME)
genetics = genetic_parser(demo_path, STUDY_NAME)
processings = freesurfer_parser(demo_path, STUDY_NAME)
# Define all the importers
db_grp_importer = CWGroups(session, ["toy_V0", "toy_V1", "toy", "uploaders"],
use_store=False)
db_user_importer = CWUsers(session, USERS)
db_subject_importer = Subjects(
"user2": {
"login": "******",
"password": "******",
"group_names": ["toy_V1", "users"]
},
"user3": {
"login": "******",
"password": "******",
"group_names": ["toy", "users"]
}
}
STUDY_NAME = "toy"
CENTER_NAME = "home"
# Create a cw session
config = cwconfig.instance_configuration(instance_name)
repo, cnx = in_memory_repo_cnx(config, login=login, password=password)
session = repo._get_session(cnx.sessionid)
# Parse the file system
subjects = subject_parser(demo_path, STUDY_NAME)
scans = scan_parser(demo_path, STUDY_NAME)
questionnaires = questionnaire_parser(demo_path, STUDY_NAME)
genetics = genetic_parser(demo_path, STUDY_NAME)
processings = freesurfer_parser(demo_path, STUDY_NAME)
# Define all the importers
db_grp_importer = CWGroups(session, ["toy_V0", "toy_V1", "toy", "uploaders"],
use_store=False)
db_user_importer = CWUsers(session, USERS)
db_subject_importer = Subjects(session, STUDY_NAME, subjects, use_store=False)
