def get_all_rows(self):
"""
Rows to appear in the "Subjects" sheet of export_table().
CdiscOdmExportWriter will render this using the odm_export.xml template to combine subjects into a single
ODM XML document.
The values are also used to register new subjects if the web service is enabled.
"""
audit_log_id_ref = {'id': 0} # To exclude audit logs, set `custom.openclinica.const.AUDIT_LOGS = False`
query = self._build_query().case_type(CC_SUBJECT_CASE_TYPE).start(0).size(SIZE_LIMIT)
rows = []
for result in query.scroll():
case = CommCareCase.wrap(result)
if not self.is_subject_selected(case):
continue
subject = Subject.wrap(case, audit_log_id_ref)
row = [
'SS_' + subject.subject_key, # OpenClinica prefixes subject key with "SS_" to make the OID
subject.study_subject_id,
subject.enrollment_date,
subject.sex,
subject.dob,
subject.get_export_data(),
]
rows.append(row)
return rows
def rows(self):
audit_log_id_ref = {'id': 0} # To exclude audit logs, set `custom.openclinica.const.AUDIT_LOGS = False`
for res in self.es_results['hits'].get('hits', []):
case = CommCareCase.wrap(res['_source'])
if not self.is_subject_selected(case):
continue
subject = Subject.wrap(case, audit_log_id_ref)
row = [
subject.subject_key, # What OpenClinica refers to as Person ID; i.e. OID with the "SS_" prefix
subject.study_subject_id,
subject.enrollment_date,
subject.sex,
subject.dob,
subject.get_report_events(),
]
yield row
def rows(self):
audit_log_id_ref = {'id': 0} # To exclude audit logs, set `custom.openclinica.const.AUDIT_LOGS = False`
query = self._build_query().case_type(CC_SUBJECT_CASE_TYPE)
for result in query.scroll():
case = CommCareCase.wrap(result)
if not self.is_subject_selected(case):
continue
subject = Subject.wrap(case, audit_log_id_ref)
row = [
subject.subject_key, # What OpenClinica refers to as Person ID; i.e. OID with the "SS_" prefix
subject.study_subject_id,
subject.enrollment_date,
subject.sex,
subject.dob,
subject.get_report_events(),
]
yield row
def get_all_rows(self):
"""
Rows to appear in the "Subjects" sheet of export_table().
CdiscOdmExportWriter will render this using the odm_export.xml template to combine subjects into a single
ODM XML document.
"""
audit_log_id_ref = {'id': 0} # To exclude audit logs, set `custom.openclinica.const.AUDIT_LOGS = False`
query = self._build_query().start(0).size(SIZE_LIMIT)
for result in query.scroll():
case = CommCareCase.wrap(result)
if not self.is_subject_selected(case):
continue
subject = Subject.wrap(case, audit_log_id_ref)
row = [
'SS_' + subject.subject_key, # OpenClinica prefixes subject key with "SS_" to make the OID
subject.study_subject_id,
subject.get_export_data(),
]
yield row
