def test_on_trait_lambda_failure(self):
# Lambda function are converted like builtins when cythonized which
# causes the following code to fail
code = """
from traits.api import HasTraits, Str, Int, Property
def Alias(name):
return Property(
lambda obj: getattr(obj, name),
lambda obj, value: setattr(obj, name, value)
)
class Test(HasTraits):
name = Str
funky_name = Alias('name')
return Test()
"""
try:
cython.inline(code, get_type=_always_object_type, force=True,
locals={}, globals={})
except:
# We suppose we have an exception. Because of the usage of the
# skipIf decorator on the test, we can't use an expectedFailure
# decorator as they don't play well together.
pass
else:
self.fail(
'Unexpected results. Cython was not managing lambda as regular'
' functions. Behaviour changed ...'
)
def gilsleep(t):
"""gil-holding sleep with cython.inline"""
code = "\n".join(["from posix cimport unistd", "unistd.sleep(t)"])
while True:
inline(code, quiet=True, t=t)
print(time.time())
sys.stdout.flush() # this is important
def gilsleep(t):
"""gil-holding sleep with cython.inline"""
code = "\n".join(["from posix cimport unistd", "unistd.sleep(t)"])
while True:
inline(code, quiet=True, t=t)
print(time.time())
sys.stdout.flush() # this is important
def gilsleep(t):
"""gil-holding sleep with cython.inline"""
code = '\n'.join([
'from posix cimport unistd',
'unistd.sleep(t)',
])
while True:
inline(code, quiet=True, t=t)
print time.time()
sys.stdout.flush() # this is important
def has_no_compiler():
if no_cython:
return True
# Easy way to check if we have access to a compiler
code = "return 1+1"
try:
cython.inline(code)
return False
except:
return True
def gilsleep(t):
"""gil-holding sleep with cython.inline"""
code = '\n'.join([
'from posix cimport unistd',
'unistd.sleep(t)',
])
while True:
inline(code, quiet=True, t=t)
print time.time()
sys.stdout.flush() # this is important
def _test_cython(cls):
if not hasattr(cls, '_use_cython'):
cls._use_cython = False
if cython is None:
return
try:
cython.inline('x = 1', force=True, quiet=True)
cls._use_cython = True
except cython.Compiler.Errors.CompileError:
pass
def has_no_compiler():
if no_cython:
return True
# Easy way to check if we have access to a compiler
code = "return 1+1"
try:
cython.inline(code)
return False
except:
return True
def test_on_trait_aliasing_different_scope(self):
code = """
from traits.api import HasTraits, Str, Int, Property
def _get_value(self, name):
return getattr(self, 'name')
def _set_value(self, name, value):
return setattr(self, 'name', value)
class Test(HasTraits):
name = Str
funky_name = Property(_get_value, _set_value)
return Test()
"""
obj = cython.inline(code, get_type=_always_object_type)
self.assertEquals(obj.funky_name, obj.name)
# Assert dependency works
obj.name = 'Bob'
self.assertEquals(obj.funky_name, obj.name)
def generate_marshall_method(schema, context=missing, threshold=100):
# type: (Schema, JitContext, int) -> Union[SerializeProxy, Callable, None]
"""Generates a function to marshall objects for a given schema.
:param schema: The Schema to generate a marshall method for.
:param threshold: The number of calls of the same type to observe before
specializing the marshal method for that type.
:param use_cython: Whether or not to attempt to use cython when Jitting.
:return: A Callable that can be used to marshall objects for the schema
"""
if is_overridden(schema.get_attribute, Schema.get_attribute):
# Bail if get_attribute is overridden
return None
if context is missing:
context = JitContext()
context.namespace['dict_class'] = lambda: schema.dict_class() # pylint: disable=unnecessary-lambda
jit_options = getattr(schema.opts, 'jit_options', {})
context.schema_stack.add(schema.__class__)
result = generate_marshall_method_bodies(schema, context)
result += '\n\n' + '\n\n'.join(context.additional_method_bodies)
context.additional_method_bodies = []
context.schema_stack.remove(schema.__class__)
namespace = context.namespace
for key, value in iteritems(schema.fields):
namespace[field_symbol_name(key) + '__serialize'] = value._serialize
if value.default is not missing:
namespace[field_symbol_name(key) + '__default'] = value.default
if context.use_cython and CYTHON_AVAILABLE:
namespace = cython.inline(result, **namespace)
else:
exec_(result, namespace)
proxy = None # type: Optional[SerializeProxy]
marshall_method = None # type: Union[SerializeProxy, Callable, None]
if jit_options.get('expected_marshal_type') in EXPECTED_TYPE_TO_CLASS:
marshall_method = namespace[EXPECTED_TYPE_TO_CLASS[
jit_options['expected_marshal_type']].__name__]
else:
marshall_method = SerializeProxy(
namespace[DictSerializer.__name__],
namespace[HybridSerializer.__name__],
namespace[InstanceSerializer.__name__],
threshold=threshold)
proxy = marshall_method
def marshall(obj, many=False):
if many:
return [marshall_method(x) for x in obj]
return marshall_method(obj)
if proxy:
marshall.proxy = proxy # type: ignore
return marshall
def typed(obj):
"""Compiles a function or class with cython.
Use annotations for static type declarations. Example:
import statically
@statically.typed
def add_two(x: int) -> int:
two: int = 2
return x + two
"""
if not _can_cython_inline():
return obj
elif has_async_gen_fun and inspect.isasyncgenfunction(obj):
raise TypeError("Async generator funcions are not supported.")
source = _get_source_code(obj)
frame = inspect.currentframe().f_back
if inspect.isclass(obj):
locals_ = frame.f_locals
else:
locals_ = _get_outer_variables(obj)
with warnings.catch_warnings():
warnings.simplefilter("ignore")
compiled = cython.inline(source,
locals=locals_,
globals=frame.f_globals,
quiet=True)
return compiled[obj.__name__]
def test_on_trait_on_trait_change_decorator(self):
code = """
from traits.api import HasTraits, Str, Int, on_trait_change
class Test(HasTraits):
name = Str
value = Int
@on_trait_change('name')
def _update_value(self):
self.value += 1
return Test()
"""
obj = cython.inline(
code,
get_type=_always_object_type,
force=True,
locals={},
globals={},
)
with self.assertTraitChanges(obj, "value", count=1):
obj.name = "changing_name"
self.assertEqual(obj.value, 1)
def test_on_trait_aliasing(self):
code = """
from traits.api import HasTraits, Str, Int, Property
def Alias(name):
def _get_value(self):
return getattr(self, name)
def _set_value(self, value):
return setattr(self, name, value)
return Property(_get_value, _set_value)
class Test(HasTraits):
name = Str
funky_name = Alias('name')
return Test()
"""
obj = cython.inline(code, get_type=_always_object_type, force=True,
locals={}, globals={})
self.assertEquals(obj.funky_name, obj.name)
# Assert dependency works
obj.name = 'Bob'
self.assertEquals(obj.funky_name, obj.name)
def test_on_trait_properties_with_standard_getter(self):
code = """
from traits.api import HasTraits, Str, Int, Property
class Test(HasTraits):
name = Str
def _get_name_length(self):
return len(self.name)
name_len = Property(_get_name_length)
return Test()
"""
obj = cython.inline(
code,
get_type=_always_object_type,
force=True,
locals={},
globals={},
)
self.assertEqual(obj.name_len, len(obj.name))
# Assert dependency works
obj.name = "Bob"
self.assertEqual(obj.name_len, len(obj.name))
def cythonize_func_inline_method(self, func, function_lines, def_line_index, hash_only=False, *args, **kwargs):
"""
Compiles the function if it hasn't been compile before, and stores the function for reuse
"""
if hash_only:
cython_def_lines = self.format_function_code_to_cython(
func, function_lines, def_line_index, hash_only=True, *args, **kwargs
)
function_hash_name = self.hash_func(cython_def_lines)
return function_hash_name
else:
cython_function_code, cython_def_lines = self.format_function_code_to_cython(
func, function_lines, def_line_index, *args, **kwargs
)
cythonized_func = cython_inline(cython_function_code, cython_compiler_directives={
"infer_types": self.infer_types,
})
cythonized_func = cythonized_func.get(func.__name__, None)
if cythonized_func is None:
python_func = "".join(function_lines)
cythonized_func = cython.inline(python_func).get(func.__name__, None)
if cythonized_func is None:
cythonized_func = func
function_hash_name = self.hash_func(cython_def_lines)
return function_hash_name, cythonized_func
def test_on_trait_on_trait_change_decorator(self):
code = """
from traits.api import HasTraits, Str, Int, on_trait_change
class Test(HasTraits):
name = Str
value = Int
@on_trait_change('name')
def _update_value(self):
self.value += 1
return Test()
"""
obj = cython.inline(
code,
get_type=_always_object_type,
force=True,
locals={},
globals={},
)
with self.assertTraitChanges(obj, "value", count=1):
obj.name = "changing_name"
self.assertEqual(obj.value, 1)
def test_on_trait_properties(self):
code = """
from traits.api import HasTraits, Str, Int, Property, cached_property
class Test(HasTraits):
name = Str
name_len = Property(depends_on='name')
@cached_property
def _get_name_len(self):
return len(self.name)
return Test()
"""
obj = cython.inline(
code,
get_type=_always_object_type,
force=True,
locals={},
globals={},
)
self.assertEqual(obj.name_len, len(obj.name))
# Assert dependency works
obj.name = "Bob"
self.assertEqual(obj.name_len, len(obj.name))
def test_on_trait_aliasing(self):
code = """
from traits.api import HasTraits, Str, Int, Property
def Alias(name):
def _get_value(self):
return getattr(self, name)
def _set_value(self, value):
return setattr(self, name, value)
return Property(_get_value, _set_value)
class Test(HasTraits):
name = Str
funky_name = Alias('name')
return Test()
"""
obj = cython.inline(
code,
get_type=_always_object_type,
force=True,
locals={},
globals={},
)
self.assertEqual(obj.funky_name, obj.name)
# Assert dependency works
obj.name = "Bob"
self.assertEqual(obj.funky_name, obj.name)
def test_on_trait_aliasing_different_scope(self):
code = """
from traits.api import HasTraits, Str, Int, Property
def _get_value(self, name):
return getattr(self, 'name')
def _set_value(self, name, value):
return setattr(self, 'name', value)
class Test(HasTraits):
name = Str
funky_name = Property(_get_value, _set_value)
return Test()
"""
obj = cython.inline(code, get_type=_always_object_type)
self.assertEqual(obj.funky_name, obj.name)
# Assert dependency works
obj.name = "Bob"
self.assertEqual(obj.funky_name, obj.name)
def test_on_trait_properties_with_standard_getter(self):
code = """
from traits.api import HasTraits, Str, Int, Property
class Test(HasTraits):
name = Str
def _get_name_length(self):
return len(self.name)
name_len = Property(_get_name_length)
return Test()
"""
obj = cython.inline(
code,
get_type=_always_object_type,
force=True,
locals={},
globals={},
)
self.assertEqual(obj.name_len, len(obj.name))
# Assert dependency works
obj.name = "Bob"
self.assertEqual(obj.name_len, len(obj.name))
def test_on_trait_properties(self):
code = """
from traits.api import HasTraits, Str, Int, Property, cached_property
class Test(HasTraits):
name = Str
name_len = Property(depends_on='name')
@cached_property
def _get_name_len(self):
return len(self.name)
return Test()
"""
obj = cython.inline(
code,
get_type=_always_object_type,
force=True,
locals={},
globals={},
)
self.assertEqual(obj.name_len, len(obj.name))
# Assert dependency works
obj.name = "Bob"
self.assertEqual(obj.name_len, len(obj.name))
def has_no_compiler():
if no_cython:
return True
code = "return 1+1"
try:
result = cython.inline(code)
return False
except:
return True
def has_no_compiler():
if no_cython:
return True
code = "return 1+1"
try:
result = cython.inline(code)
return False
except:
return True
def test_on_trait_lambda_failure(self):
# Lambda function are converted like builtins when cythonized which
# causes the following code to fail
code = """
from traits.api import HasTraits, Str, Int, Property
def Alias(name):
return Property(
lambda obj: getattr(obj, name),
lambda obj, value: setattr(obj, name, value)
)
class Test(HasTraits):
name = Str
funky_name = Alias('name')
return Test()
"""
try:
cython.inline(
code,
get_type=_always_object_type,
force=True,
locals={},
globals={},
)
except:
# We suppose we have an exception. Because of the usage of the
# skipIf decorator on the test, we can't use an expectedFailure
# decorator as they don't play well together.
pass
else:
self.fail(
"Unexpected results. Cython was not managing lambda as regular"
" functions. Behaviour changed ...")
def test_basic_events(self):
code = """
from traits.api import HasTraits, Str
class Test(HasTraits):
name = Str
return Test()
"""
obj = cython.inline(code)
with self.assertTraitChanges(obj, "name", count=1):
obj.name = "changing_name"
def test_basic_events(self):
code = """
from traits.api import HasTraits, Str
class Test(HasTraits):
name = Str
return Test()
"""
obj = cython.inline(code)
with self.assertTraitChanges(obj, 'name', count=1):
obj.name = 'changing_name'
def test_simple_default_methods(self):
code = """
from traits.api import HasTraits, Str
class Test(HasTraits):
name = Str
def _name_default(self):
return 'Joe'
return Test()
"""
obj = cython.inline(code)
self.assertEqual(obj.name, "Joe")
def test_simple_default_methods(self):
code = """
from traits.api import HasTraits, Str
class Test(HasTraits):
name = Str
def _name_default(self):
return 'Joe'
return Test()
"""
obj = cython.inline(code)
self.assertEquals(obj.name, 'Joe')
def test_on_trait_static_handlers(self):
code = """
from traits.api import HasTraits, Str, Int
class Test(HasTraits):
name = Str
value = Int
def _name_changed(self):
self.value += 1
return Test()
"""
obj = cython.inline(code, get_type=_always_object_type, force=True)
with self.assertTraitChanges(obj, "value", count=1):
obj.name = "changing_name"
self.assertEqual(obj.value, 1)
def test_on_trait_static_handlers(self):
code = """
from traits.api import HasTraits, Str, Int
class Test(HasTraits):
name = Str
value = Int
def _name_changed(self):
self.value += 1
return Test()
"""
obj = cython.inline(code, get_type=_always_object_type, force=True)
with self.assertTraitChanges(obj, 'value', count=1):
obj.name = 'changing_name'
self.assertEquals(obj.value, 1)
def test_on_trait_change_decorator(self):
code = """
from traits.api import Int, HasTraits, Str, on_trait_change
class Test(HasTraits):
name = Str
value = Int
@on_trait_change('name')
def _update_a_value(self):
self.value += 1
return Test()
"""
obj = cython.inline(code)
with self.assertTraitChanges(obj, 'value', count=1):
obj.name = 'changing_name'
self.assertEquals(obj.value, 1)
def test_on_trait_change_decorator(self):
code = """
from traits.api import Int, HasTraits, Str, on_trait_change
class Test(HasTraits):
name = Str
value = Int
@on_trait_change('name')
def _update_a_value(self):
self.value += 1
return Test()
"""
obj = cython.inline(code)
with self.assertTraitChanges(obj, 'value', count=1):
obj.name = 'changing_name'
self.assertEquals(obj.value, 1)
def timefunc_cython_inline():
cython.inline(code, locals=ns)
def _create_cnamedtuple_class(classname, code, cython_options):
code = code + "\nGenericClass = " + classname + "\n"
ret = cython.inline(code, **cython_options)
return ret["GenericClass"]
#!/usr/bin/env python
import os
import sys
try:
from setuptools import setup
except ImportError:
from distutils.core import setup
try:
# check we can compile on this machine
import cython
cython.inline("return 1;")
from Cython.Build import cythonize
ext_modules = cythonize("param/*.py", exclude=['param/ipython.py'])
except:
ext_modules = []
setup_args = {}
setup_args.update(
dict(name='param',
version="1.5.1",
description='Declarative Python programming using Parameters.',
long_description=open('README.rst').read()
if os.path.isfile('README.rst') else 'Consult README.rst',
author="IOAM",
author_email="*****@*****.**",
ext_modules=ext_modules,
maintainer="IOAM",
#!/usr/bin/env python
import os
import sys
try:
from setuptools import setup
except ImportError:
from distutils.core import setup
try:
# check we can compile on this machine
import cython; cython.inline("return 1;")
from Cython.Build import cythonize
ext_modules = cythonize("param/*.py", exclude=['param/ipython.py'])
except:
ext_modules = []
setup_args = {}
setup_args.update(dict(
name='param',
version="1.5.0",
description='Declarative Python programming using Parameters.',
long_description=open('README.rst').read() if os.path.isfile('README.rst') else 'Consult README.rst',
author= "IOAM",
author_email= "*****@*****.**",
ext_modules=ext_modules,
maintainer="IOAM",
maintainer_email="*****@*****.**",
platforms=['Windows', 'Mac OS X', 'Linux'],
from brian2 import *
from brian2.memory.dynamicarray import *
from cython import inline
from brian2.codegen.runtime.cython_rt.modified_inline import modified_cython_inline as inline
x = DynamicArray1D(10)
code = '''
print 'hi'
for i in xrange(len(x)):
print x[i]
'''
ns = {'x': x}
a, b = inline(code, locals=ns, globals={})
print dir(a)
print b
a.__invoke(*b)
packages=find_packages(exclude=('*.tests.*', '*.tests')),
include_package_data=True,
scripts=['scripts/pyou', ],
install_requires=requirements,
extras_require={'full': full_requirements}
)
if build_cmd != 'clean' and not PYPY: # skip cython in pypy
try:
from Cython.Build import cythonize
from Cython.Distutils import build_ext
import cython
# detect if cython works
if sys.platform == 'win32':
cython.inline('return a + b', a=1, b=1)
extension_kw = dict()
if 'MSC' in sys.version:
extension_kw['extra_compile_args'] = ['/Ot']
extensions = [
Extension('odps.types_c', ['odps/src/types_c.pyx'], **extension_kw),
Extension('odps.crc32c_c', ['odps/src/crc32c/*.pyx'], **extension_kw),
Extension('odps.tunnel.pb.encoder_c', ['odps/tunnel/pb/encoder_c.pyx'], **extension_kw),
Extension('odps.tunnel.pb.decoder_c', ['odps/tunnel/pb/decoder_c.pyx'], **extension_kw),
Extension('odps.tunnel.pb.util_c', ['odps/tunnel/pb/util_c.pyx'], **extension_kw),
Extension('odps.tunnel.checksum_c', ['odps/tunnel/checksum_c.pyx'], **extension_kw),
Extension('odps.tunnel.tabletunnel.writer_c', ['odps/tunnel/tabletunnel/writer_c.pyx'], **extension_kw),
Extension('odps.tunnel.tabletunnel.reader_c', ['odps/tunnel/tabletunnel/reader_c.pyx'], **extension_kw),
]
def timefunc_cython_inline():
cython.inline(code, locals=ns)
if CHECK_BOUNDS:
add("while p > cells.__len__(): cells.append(0)")
elif c == BWD:
if OPTIMIZATION and prog_lines[-1][:len(indent)+5]==indent+"p -= ":
n = int(prog_lines[-1][len(indent)+5:]) + 1
prog_lines[-1] = indent+"p -= %d"%n
else:
add("p -= 1")
if CHECK_BOUNDS:
add("if p < 0: sys.exit(1)")
elif c == INC:
if OPTIMIZATION and prog_lines[-1][:len(indent)+12]==indent+"cells[p] += ":
n = int(prog_lines[-1][len(indent)+12:]) + 1
prog_lines[-1] = indent+"cells[p] += %d"%n
else:
add("cells[p] += 1")
elif c == DEC:
if OPTIMIZATION and prog_lines[-1][:len(indent)+12]==indent+"cells[p] -= ":
n = int(prog_lines[-1][len(indent)+12:]) + 1
prog_lines[-1] = indent+"cells[p] -= %d"%n
else:
add("cells[p] -= 1")
elif c == START:
add("while cells[p]:")
indent += " "
elif c == END:
indent = indent[:-2]
import cython
cython.inline("\n".join(prog_lines))
#!/usr/bin/env python
import os
import sys
try:
from setuptools import setup
except ImportError:
from distutils.core import setup
try:
# check we can compile on this machine
import cython; cython.inline("return 1;")
from Cython.Build import cythonize
ext_modules = cythonize("param/*.py", exclude=['param/ipython.py'])
except:
ext_modules = []
setup_args = {}
setup_args.update(dict(
name='param',
version="1.5.1",
description='Declarative Python programming using Parameters.',
long_description=open('README.rst').read() if os.path.isfile('README.rst') else 'Consult README.rst',
author= "IOAM",
author_email= "*****@*****.**",
ext_modules=ext_modules,
maintainer="IOAM",
maintainer_email="*****@*****.**",
platforms=['Windows', 'Mac OS X', 'Linux'],
include_package_data=True,
scripts=[
'scripts/pyou',
],
install_requires=requirements,
extras_require={'full': full_requirements})
if build_cmd != 'clean' and not PYPY: # skip cython in pypy
try:
from Cython.Build import cythonize
from Cython.Distutils import build_ext
import cython
# detect if cython works
if sys.platform == 'win32':
cython.inline('return a + b', a=1, b=1)
extensions = [
Extension('odps.types_c', ['odps/src/types_c.pyx']),
Extension('odps.crc32c_c', ['odps/src/crc32c/*.pyx']),
Extension('odps.tunnel.pb.encoder_c',
['odps/tunnel/pb/encoder_c.pyx']),
Extension('odps.tunnel.pb.decoder_c',
['odps/tunnel/pb/decoder_c.pyx']),
Extension('odps.tunnel.pb.util_c', ['odps/tunnel/pb/util_c.pyx']),
Extension('odps.tunnel.checksum_c',
['odps/tunnel/checksum_c.pyx']),
Extension('odps.tunnel.tabletunnel.writer_c',
['odps/tunnel/tabletunnel/writer_c.pyx']),
Extension('odps.tunnel.tabletunnel.reader_c',
['odps/tunnel/tabletunnel/reader_c.pyx']),
def rhs(t, y, p):
# note that the evaluated code sets ydot as a side effect
cython.inline(code_eqs, quiet=True)
return ydot
def jacobian(t, y, p):
cython.inline(jac_eqs, quiet=True)
return jac
