def setUp(self):
ImportedDataTest.setUp(self)
self.ex = flow.ChannelStatisticOp(name="ByDox",
by=['Dox', 'Well'],
channel="Y2-A",
function=flow.geom_mean).apply(
self.ex)
self.view = flow.BarChartView(statistic=("ByDox", "geom_mean"),
variable="Well",
huefacet="Dox")
def testBarChart(self):
import numpy as np
ex2 = flow.ChannelStatisticOp(name="Stats1D",
by=["Dox"],
channel="V2-A",
function=np.mean).apply(self.ex)
warnings.filterwarnings(
'ignore',
'axes.color_cycle is deprecated and replaced with axes.prop_cycle')
flow.BarChartView(statistic=("Stats1D", "mean"),
variable="Dox").plot(ex2)
def testBarChart(self):
flow.BarChartView(name="Bar Chart",
channel="Y2-A",
by="Dox",
function=len).plot(self.ex)
ex.add_conditions({"Dox" : "float", "Repl" : "int"})
ex.add_tube(tube1, {"Dox" : 10.0, "Repl" : 1})
ex.add_tube(tube2, {"Dox" : 1.0, "Repl" : 1})
ex.add_tube(tube3, {"Dox" : 10.0, "Repl" : 2})
ex.add_tube(tube4, {"Dox" : 1.0, "Repl" : 2})
hlog = flow.HlogTransformOp()
hlog.name = "Hlog transformation"
hlog.channels = ['V2-A', 'Y2-A', 'B1-A', 'FSC-A', 'SSC-A']
ex2 = hlog.apply(ex)
thresh = flow.ThresholdOp()
thresh.name = "Y2-A+"
thresh.channel = 'Y2-A'
thresh.threshold = 2005.0
ex3 = thresh.apply(ex2)
s = flow.BarChartView()
s.channel = "V2-A"
s.function = flow.geom_mean
s.by = "Dox"
s.huefacet = "Y2-A+"
#s.error_bars = "data"
#s.error_var = "Repl"
#s.error_function = np.std
plt.ioff()
s.plot(ex3)
plt.show()
