def on_save(self):
""" Save the file to the previous filename """
if self.filename:
save_yaml(self.model.workflow, self.filename)
self.model.modified = False
else:
self.on_save_as()
def testSerializeWorkflowItemV1(self):
with params_traits_comparator(Stats1DPlotParams):
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(self.view,
filename,
lock_versions={
WorkflowItem: 1,
pd.Series: 1
})
new_view = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
self.assertDictEqual(
self.view.trait_get(
self.view.copyable_trait_names(
**{"status": lambda t: t is not True})),
new_view.trait_get(
self.view.copyable_trait_names(
**{"status": lambda t: t is not True})))
def on_save_as(self):
dialog = DefaultFileDialog(parent = self.window.control,
action = 'save as',
default_suffix = "flow",
wildcard = (FileDialog.create_wildcard("Cytoflow workflow", "*.flow") + ';' + #@UndefinedVariable
FileDialog.create_wildcard("All files", "*"))) #@UndefinedVariable
if dialog.open() == OK:
save_yaml(self.model.workflow, dialog.path)
self.filename = dialog.path
self.model.modified = False
self.window.title = "Cytoflow - " + self.filename
def testSerialize(self):
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(self.op, filename)
new_op = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
self.assertDictEqual(self.op.trait_get(self.op.copyable_trait_names()),
new_op.trait_get(self.op.copyable_trait_names()))
def testSerializeV1(self):
with params_traits_comparator(HistogramPluginView, HistogramPlotParams):
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(self.view, filename, lock_versions = {HistogramPlotParams : 1})
new_view = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
self.assertDictEqual(self.view.trait_get(self.view.copyable_trait_names()),
new_view.trait_get(self.view.copyable_trait_names()))
def testSerialize(self):
with params_traits_comparator(BarChartPlotParams):
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(self.view, filename)
new_view = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
self.assertDictEqual(self.view.trait_get(self.view.copyable_trait_names(**{"status" : lambda t: t is not True})),
new_view.trait_get(self.view.copyable_trait_names(**{"status" : lambda t: t is not True})))
def testSerialize(self):
with params_traits_comparator(DensityPlotParams):
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(self.view, filename)
new_view = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
self.assertDictEqual(self.view.trait_get(self.view.copyable_trait_names()),
new_view.trait_get(self.view.copyable_trait_names()))
def testSerialize(self):
wi = self.workflow.workflow[0]
op = wi.operation
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(op, filename)
new_op = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
new_op.ret_events = op.ret_events
self.assertDictEqual(op.trait_get(op.copyable_trait_names()),
new_op.trait_get(op.copyable_trait_names()))
def testSerialize(self):
with params_traits_comparator(_BleedthroughControl), \
params_traits_comparator(_TranslationControl):
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(self.op, filename)
new_op = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
self.assertDictEqual(
self.op.trait_get(self.op.copyable_trait_names()),
new_op.trait_get(self.op.copyable_trait_names()))
def testSerialize(self):
with params_traits_comparator(WorkflowItem, ImportPluginOp, ChannelStatisticPluginOp):
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(self.workflow.workflow, filename)
new_workflow = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
for i in range(len(new_workflow)):
self.assertDictEqual(self.workflow.workflow[i].trait_get(self.workflow.workflow[i].copyable_trait_names(status = lambda t: t is not True)),
new_workflow[i].trait_get(self.workflow.workflow[i].copyable_trait_names(status = lambda t: t is not True)))
def testSerializeV1(self):
HistogramPlotParams.__eq__ = traits_eq
HistogramPlotParams.__hash__ = traits_hash
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(self.view, filename, lock_versions = {HistogramPlotParams : 1})
new_view = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
self.assertDictEqual(self.view.trait_get(self.view.copyable_trait_names()),
new_view.trait_get(self.view.copyable_trait_names()))
def testSerialize(self):
Stats2DPlotParams.__eq__ = traits_eq
Stats2DPlotParams.__hash__ = traits_hash
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(self.view, filename)
new_view = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
self.assertDictEqual(self.view.trait_get(self.view.copyable_trait_names()),
new_view.trait_get(self.view.copyable_trait_names()))
def testSerialize(self):
with params_traits_comparator(EmptyPlotParams):
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(self.view, filename)
new_view = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
old_traits = self.view.trait_get(self.view.copyable_trait_names())
new_traits = new_view.trait_get(self.view.copyable_trait_names())
# we don't serialize the result
old_traits['result'] = None
self.assertDictEqual(old_traits, new_traits)
def testSerialize(self):
_BleedthroughControl.__eq__ = traits_eq
_BleedthroughControl.__hash__ = traits_hash
_TranslationControl.__eq__ = traits_eq
_TranslationControl.__hash__ = traits_hash
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(self.op, filename)
new_op = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
self.assertDictEqual(self.op.trait_get(self.op.copyable_trait_names()),
new_op.trait_get(self.op.copyable_trait_names()))
def testSerializeWorkflowItemV1(self):
Stats1DPlotParams.__eq__ = traits_eq
Stats1DPlotParams.__hash__ = traits_hash
fh, filename = tempfile.mkstemp()
try:
os.close(fh)
save_yaml(self.view,
filename,
lock_versions={
WorkflowItem: 1,
pandas.Series: 1
})
new_view = load_yaml(filename)
finally:
os.unlink(filename)
self.maxDiff = None
self.assertDictEqual(
self.view.trait_get(self.view.copyable_trait_names()),
new_view.trait_get(self.view.copyable_trait_names()))