def testEqualStringsLength1Concise(self):
"""
If two equal strings of length 1 are passed and the concise argument
is True, the correct CIGAR string must be returned.
"""
self.assertEqual('1M', dna2cigar('A', 'A', concise=True))
def testEqualStringsLength1MismatchedCase(self):
"""
If two strings of length 1 are passed and the're the same but for
case, the CIGAR string must indicate that they do not match.
"""
self.assertEqual('1X', dna2cigar('A', 'a'))
def testMixedEqualityStringsLength2ConciseAlt(self):
"""
If two equal strings of length 2 are passed and the concise argument
is True, the correct CIGAR string must be returned.
"""
self.assertEqual('2M', dna2cigar('GA', 'TA', concise=True))
def testEqualStringsLength1(self):
"""
If two equal strings of length 1 are passed, the correct CIGAR string
must be returned.
"""
self.assertEqual('1=', dna2cigar('A', 'A'))
def testMixedEqualityStringsLength2Alt(self):
"""
If two strings of length 2 are passed and they match in just one
place, the correct CIGAR string must be returned.
"""
self.assertEqual('1X1=', dna2cigar('GA', 'TA'))