import numpy as np
import os
pg.mkQApp()
## Define main window class from template
path = os.path.dirname(os.path.abspath(__file__))
uiFile = os.path.join(path, 'imagingAnalysis.ui')
WindowTemplate, TemplateBaseClass = pg.Qt.loadUiType(uiFile)
import tifffile
import numpy as np
import db_access as dba
fly_db = dba.get_db()
default_rframe_data = {
'a1': np.array([51.5848967, -5.93928407]),
'a2': np.array([-0.09151179, 88.42505672]),
'p': np.array([26.66908747, 34.43488385])
}
stacked_muscles = tifffile.TiffFile('stacked_muscles.tiff')
overlay = np.transpose(stacked_muscles.asarray(),
(1, 0, 2))[:, ::-1].astype(np.float32)
#tiff_file = '/volumes/FlyDataB/FlyDB/Fly0212/T2_trial1_ND_04_1ms_exposure/T2_trial1_ND_04_1ms_exposure_MMStack.ome.tif'
#tiff_file_name = '/media/FlyDataB/FlyDB/Fly0267/T2_trial1_ND_04_100us_exposure_td_refstack/T2_trial1_ND_04_100us_exposure_td_refstack_MMStack.ome.tif'
from pyqtgraph.Qt import QtCore, QtGui#QStringList,QString
import numpy as np
import os
pg.mkQApp()
## Define main window class from template
path = os.path.dirname(os.path.abspath(__file__))
uiFile = os.path.join(path, 'imagingAnalysis.ui')
WindowTemplate, TemplateBaseClass = pg.Qt.loadUiType(uiFile)
import tifffile
import numpy as np
import db_access as dba
fly_db = dba.get_db()
default_rframe_data = {'a1': np.array([ 51.5848967 , -5.93928407]),
'a2': np.array([ -0.09151179, 88.42505672]),
'p': np.array([ 26.66908747, 34.43488385])}
stacked_muscles = tifffile.TiffFile('stacked_muscles.tiff')
overlay = np.transpose(stacked_muscles.asarray(),(1,0,2))[:,::-1].astype(np.float32)
#tiff_file = '/volumes/FlyDataB/FlyDB/Fly0212/T2_trial1_ND_04_1ms_exposure/T2_trial1_ND_04_1ms_exposure_MMStack.ome.tif'
#tiff_file_name = '/media/FlyDataB/FlyDB/Fly0267/T2_trial1_ND_04_100us_exposure_td_refstack/T2_trial1_ND_04_100us_exposure_td_refstack_MMStack.ome.tif'
class Basis(dict):
def __setitem__(self,key,item):
try: