def OnOutlineMarked(self, evt=None):
'''Outlines all non-NULL values of the current annotation
'''
# Disable filters when outlining marked wells
#if self.outlineMarked.IsChecked():
#self.filterChoice.SetStringSelection(FilterComboBox.NO_FILTER)
#self.filterChoice.Disable()
#else:
#if not self.annotationShowVals.IsChecked():
#self.filterChoice.Enable()
# Update outlined wells in PlateMapPanels
for pm in self.plateMaps:
if self.outlineMarked.IsChecked():
column = self.annotationCol.Value
if p.plate_id:
res = db.execute('SELECT %s, %s FROM %s WHERE %s="%s"'%(
dbconnect.UniqueWellClause(), column, p.image_table,
p.plate_id, pm.plate))
else:
# if there's no plate_id, we assume there is only 1 plate
# and fetch all the data
res = db.execute('SELECT %s, %s FROM %s'%(
dbconnect.UniqueWellClause(), column, p.image_table))
keys = [tuple(r[:-1]) for r in res if r[-1] is not None]
pm.SetOutlinedWells(keys)
else:
pm.SetOutlinedWells([])
self.UpdatePlateMaps()
def AddPlateMap(self, plateIndex=0):
'''
Adds a new blank plateMap to the PlateMapSizer.
'''
data = np.ones(p.plate_shape)
# Try to get explicit labels for all wells.
res = db.execute('SELECT DISTINCT %s FROM %s WHERE %s != "" and %s IS NOT NULL'%
(dbconnect.UniqueWellClause(), p.image_table, p.well_id, p.well_id))
if p.plate_id:
self.plateMapChoices += [ComboBox(self, choices=db.GetPlateNames(), size=(400,-1))]
self.plateMapChoices[-1].Select(plateIndex)
self.plateMapChoices[-1].Bind(wx.EVT_COMBOBOX, self.OnSelectPlate)
#plate_col_type = db.GetColumnType(p.image_table, p.plate_id)
#plate_id = plate_col_type(self.plateMapChoices[-1].GetString(plateIndex))
plateMapChoiceSizer = wx.BoxSizer(wx.HORIZONTAL)
plateMapChoiceSizer.Add(wx.StaticText(self, label='Plate:'), flag=wx.ALIGN_CENTER_VERTICAL)
plateMapChoiceSizer.Add(self.plateMapChoices[-1], flag=wx.ALIGN_CENTER_VERTICAL)
well_keys = res
platemap = pmp.PlateMapPanel(self, data, well_keys, p.plate_shape,
colormap = self.colorMapsChoice.Value,
well_disp = self.wellDisplayChoice.Value)
platemap.add_well_selection_handler(self.OnSelectWell)
self.plateMaps += [platemap]
singlePlateMapSizer = wx.BoxSizer(wx.VERTICAL)
if p.plate_id:
singlePlateMapSizer.Add(plateMapChoiceSizer, 0, wx.ALIGN_CENTER)
singlePlateMapSizer.Add(platemap, 1, wx.EXPAND|wx.ALIGN_CENTER)
self.plateMapSizer.Add(singlePlateMapSizer, 1, wx.EXPAND|wx.ALIGN_CENTER)
