def test_mds_02(self):
# handle all zero distances
df = outliers.mds(np.zeros(shape=self.mat.shape), self.taxa)
self.assertEqual(df.shape[0], self.mat.shape[0])
self.assertTrue((df['seqname'] == self.taxa).all())
self.assertTrue((df['x'] == 0).all())
self.assertTrue((df['y'] == 0).all())
def test_mds_02(self):
# handle all zero distances
df = outliers.mds(np.zeros(shape=self.mat.shape), self.taxa)
self.assertEqual(df.shape[0], self.mat.shape[0])
self.assertTrue((df["seqname"] == self.taxa).all())
self.assertTrue((df["x"] == 0).all())
self.assertTrue((df["y"] == 0).all())
def test_mds_01(self):
df = outliers.mds(self.mat, self.taxa)
self.assertEqual(df.shape[0], self.mat.shape[0])
self.assertTrue((df['seqname'] == self.taxa).all())
def test_mds_01(self):
df = outliers.mds(self.mat, self.taxa)
self.assertEqual(df.shape[0], self.mat.shape[0])
self.assertTrue((df["seqname"] == self.taxa).all())