def dnn_sep(M, W1, W2, hh=.0001, ep=5000, d=0, sp=.0001, spb=3, al='rprop'):
# GPU cached data
_M = theano.shared(M.T.astype(float64))
dum = Th.vector('dum')
# Get layer sizes
K = []
for i in range(len(W1)):
K.append([W1[i].shape[0], W2[i].shape[0]])
K.append([M.T.shape[1], M.T.shape[1]])
# We have weights to discover, init = 2/(Nin+Nout)
H = theano.shared(
sqrt(2. / (K[0][0] + K[0][1] + M.shape[1])) *
random.rand(M.T.shape[0], K[0][0] + K[0][1]).astype(float64))
fI = InputLayer(shape=(M.T.shape[0], K[0][0] + K[0][1]), input_var=H)
# Split in two pathways, one for each source's autoencoder
H1 = (len(W1) + 1) * [None]
H2 = (len(W1) + 1) * [None]
H1[0] = SliceLayer(fI, indices=slice(0, K[0][0]), axis=1)
H2[0] = SliceLayer(fI, indices=slice(K[0][0], K[0][0] + K[0][1]), axis=1)
# Put the subsequent layers
for i in range(len(W1)):
H1[i + 1] = DenseLayer(H1[i],
num_units=K[i + 1][0],
W=W1[i].astype(float64),
nonlinearity=lambda x: psoftplus(x, spb),
b=None)
H2[i + 1] = DenseLayer(H2[i],
num_units=K[i + 1][1],
W=W2[i].astype(float64),
nonlinearity=lambda x: psoftplus(x, spb),
b=None)
# Add the two approximations
R = ElemwiseSumLayer([H1[-1], H2[-1]])
# Cost function
Ro = get_output(R) + eps
cost = Th.mean(_M * (Th.log(_M + eps) - Th.log(Ro)) - _M +
Ro) + 0 * Th.mean(dum)
for i in range(len(H1) - 1):
cost += sp * Th.mean(abs(get_output(H1[i]))) + sp * Th.mean(
abs(get_output(H2[i])))
# Train it using Lasagne
opt = downhill.build(al, loss=cost, inputs=[dum], params=[H])
train = downhill.Dataset(array([d]).astype(float64), batch_size=0)
er = downhill_train(opt, train, hh, ep, None)
# Get outputs
_r = nget(R, dum, array([0]).astype(float64)).T + eps
_r1 = nget(H1[-1], dum, array([0]).astype(float64)).T
_r2 = nget(H2[-1], dum, array([0]).astype(float64)).T
return _r, _r1, _r2, er
def dnn_model(M,
K=[20, 20],
hh=.0001,
ep=5000,
d=0,
wsp=0.0001,
hsp=0,
spb=3,
bt=0,
al='rprop'):
# Sort out the activation
from inspect import isfunction
if isfunction(spb):
act = spb
else:
act = lambda x: psoftplus(x, spb)
# Copy key variables to GPU
_M = Th.matrix('_M')
# Input and forward transform
I = InputLayer(shape=(None, M.shape[0]), input_var=_M)
# Setup the layers
L = K + [M.T.shape[1]]
H = len(L) * [None]
Hd = len(L) * [None]
# First layer
H[0] = DenseLayer(I, num_units=K[0], nonlinearity=act, b=None)
# All the rest
for k in range(1, len(L)):
# Optional dropout
Hd[k - 1] = DropoutLayer(H[k - 1], d)
# Next layer
H[k] = DenseLayer(Hd[k - 1], num_units=L[k], nonlinearity=act, b=None)
# Cost function
Ro = get_output(H[-1]) + eps
cost = Th.mean(_M * (Th.log(_M + eps) - Th.log(Ro)) - _M + Ro)
for k in range(len(L) - 1):
cost += wsp * Th.mean(abs(H[k].W)) + hsp * Th.mean(get_output(H[k]))
# Train it using Lasagne
opt = downhill.build(al,
loss=cost,
inputs=[_M],
params=get_all_params(H[-1]))
train = downhill.Dataset(M.T.astype(float64), batch_size=bt)
er = downhill_train(opt, train, hh, ep, None)
# Get approximation
h = [nget(H[k], _M, M.T.astype(float64)).T for k in range(len(L))]
w = [H[k].W.get_value() for k in range(len(L))]
return h, w, er
def cnn_model(M,
K=20,
T=1,
hh=.0001,
ep=5000,
d=0,
hsp=0.0001,
wsp=0,
spb=3,
bt=0,
al='rprop'):
# Facilitate reasonable convolutions core
theano.config.dnn.conv.algo_fwd = 'fft_tiling'
theano.config.dnn.conv.algo_bwd_filter = 'none'
theano.config.dnn.conv.algo_bwd_data = 'none'
# Reformat input data
M3 = reshape(M.astype(float32), (1, M.shape[0], M.shape[1]))
# Copy key variables to GPU
_M = Th.tensor3('_M')
# Input and forward transform
I = InputLayer(shape=M3.shape, input_var=_M)
# First layer is the transform to a non-negative subspace
H = Conv1DLayer(I,
filter_size=T,
num_filters=K,
pad='same',
nonlinearity=lambda x: psoftplus(x, spb),
b=None)
# Upper layer is the synthesizer
R = Conv1DLayer(H,
filter_size=T,
num_filters=M.shape[0],
pad='same',
nonlinearity=lambda x: psoftplus(x, spb),
b=None)
# Cost function
Ro = get_output(R) + eps
cost = Th.mean( _M*(Th.log( _M+eps) - Th.log( Ro)) - _M + Ro) \
+ hsp*Th.mean( get_output( H))
# Train it using Lasagne
opt = downhill.build(al, loss=cost, inputs=[_M], params=get_all_params(R))
train = downhill.Dataset(M3, batch_size=bt)
er = downhill_train(opt, train, hh, ep, None)
# Get approximation and hidden state
_r = squeeze(nget(R, _M, M3))
_h = squeeze(nget(H, _M, M3))
return _r, R.W.get_value(), er, _h
def cnn_model_th(M, K=20, T=1, hh=.0001, ep=5000, d=0, wsp=0.0001, dp=0):
rng = theano.tensor.shared_randomstreams.RandomStreams(0)
# Shared variables to use
x = Th.matrix('x')
y = theano.shared(M.astype(theano.config.floatX))
d = theano.shared(float32(dp))
# Network weights
W0 = theano.shared(
sqrt(2. / (K + M.shape[0])) *
random.randn(K, M.shape[0]).astype(theano.config.floatX))
W1 = theano.shared(
sqrt(2. / (K + M.shape[0])) *
random.randn(M.shape[0], K).astype(theano.config.floatX))
# First layer is the transform to a non-negative subspace
h = psoftplus(W0.dot(x), 3.)
# Dropout
if dp > 0:
h *= (1. / (1. - d) * (rng.uniform(size=h.shape) > d).astype(
theano.config.floatX)).astype(theano.config.floatX)
# Second layer reconstructs the input
l1 = W1.dot(h)
r = psoftplus(l1, 3.)
# Approximate input using KL-like distance
cost = Th.mean(y * (Th.log(y + eps) - Th.log(r + eps)) - y +
r) + wsp * Th.mean(abs(W1))
# Make an optimizer and define the training input
opt = downhill.build('rprop', loss=cost, inputs=[x], params=[W0, W1])
train = downhill.Dataset(M.astype(theano.config.floatX), batch_size=0)
# Train it
er = downhill_train(opt, train, hh, ep, None)
# Get approximation
d = 0
_h, _r = theano.function(inputs=[x], outputs=[h, r],
updates=[])(M.astype(theano.config.floatX))
o = FE.ife(_r, P)
sxr = bss_eval(o, 0, array([z]))
return _r, W1.get_value(), _h.get_value(), er
def rnn_model(M,
K=20,
hh=.0001,
ep=5000,
d=0,
wsp=0.0001,
hsp=0,
spb=3,
bt=0,
al='rmsprop',
t=5):
# Copy key variables to GPU
_M = Th.matrix('_M')
# Input and forward transform
I = InputLayer(shape=(None, M.shape[0]), input_var=_M)
# First layer is the transform to a non-negative subspace
H0 = DenseLayer(I,
num_units=K,
nonlinearity=lambda x: psoftplus(x, spb),
b=None)
# Optional dropout
H = DropoutLayer(H0, d)
# Compute output
R = RecurrentLayer(H,
num_units=M.T.shape[1],
nonlinearity=lambda x: psoftplus(x, spb),
gradient_steps=t,
b=None)
# Cost function
Ro = get_output(R) + eps
cost = Th.mean( _M*(Th.log( _M+eps) - Th.log( Ro)) - _M + Ro) \
+ hsp*Th.mean( get_output( H0))
# Train it using Lasagne
opt = downhill.build(al, loss=cost, inputs=[_M], params=get_all_params(R))
train = downhill.Dataset(M.T.astype(float32), batch_size=bt)
er = downhill_train(opt, train, hh, ep, None)
# Get approximation
_r = nget(R, _M, M.T.astype(float32)).T
_h = nget(H, _M, M.T.astype(float32)).T
return _r, (R.W_in_to_hid.get_value(), R.W_hid_to_hid.get_value()), er, _h
def nn_model(M,
K=20,
hh=.0001,
ep=5000,
d=0,
wsp=0.0001,
hsp=0,
spb=3,
bt=0,
al='rprop'):
# Sort out the activation
from inspect import isfunction
if isfunction(spb):
act = spb
else:
act = lambda x: psoftplus(x, spb)
# Copy key variables to GPU
_M = Th.matrix('_M')
# Input and forward transform
I = InputLayer(shape=(None, M.shape[0]), input_var=_M)
# First layer is the transform to a non-negative subspace
H0 = DenseLayer(I, num_units=K, nonlinearity=act, b=None)
# Optional dropout
H = DropoutLayer(H0, d)
# Compute output
R = DenseLayer(H, num_units=M.T.shape[1], nonlinearity=act, b=None)
# Cost function
Ro = get_output(R) + eps
cost = Th.mean( _M*(Th.log( _M+eps) - Th.log( Ro)) - _M + Ro) \
+ wsp*Th.mean( abs( R.W[0])) + hsp*Th.mean( get_output( H0))
# Train it using Lasagne
opt = downhill.build(al, loss=cost, inputs=[_M], params=get_all_params(R))
train = downhill.Dataset(M.T.astype(float64), batch_size=bt)
er = downhill_train(opt, train, hh, ep, None)
# Get approximation
_r = nget(R, _M, M.T.astype(float64)).T
_h = nget(H, _M, M.T.astype(float64)).T
return _r, R.W.get_value(), er, _h
def cnn_sep(M, W1, W2, hh=.0001, ep=5000, d=0, sp=.0001, spb=3, al='rprop'):
# Facilitate reasonable convolutions core
theano.config.dnn.conv.algo_fwd = 'fft_tiling'
theano.config.dnn.conv.algo_bwd_filter = 'none'
theano.config.dnn.conv.algo_bwd_data = 'none'
# Reformat input data
M3 = reshape(M.astype(float32), (1, M.shape[0], M.shape[1]))
# Copy key variables to GPU
_M = theano.shared(M3.astype(float32))
# Get dictionary shapes
K = [W1.shape[1], W2.shape[1]]
T = W1.shape[2]
# We have weights to discover
H = theano.shared(
sqrt(2. / (K[0] + K[1] + M.shape[1])) *
random.rand(1, K[0] + K[1], M.T.shape[0]).astype(float32))
fI = InputLayer(shape=(1, K[0] + K[1], M.T.shape[0]), input_var=H)
# Split in two pathways
H1 = SliceLayer(fI, indices=slice(0, K[0]), axis=1)
H2 = SliceLayer(fI, indices=slice(K[0], K[0] + K[1]), axis=1)
# Compute source modulators using previously learned convolutional dictionaries
R1 = Conv1DLayer(H1,
filter_size=T,
W=W1,
num_filters=M.shape[0],
pad='same',
nonlinearity=lambda x: psoftplus(x, spb),
b=None)
R2 = Conv1DLayer(H2,
filter_size=T,
W=W2,
num_filters=M.shape[0],
pad='same',
nonlinearity=lambda x: psoftplus(x, spb),
b=None)
# Add the two approximations
R = ElemwiseSumLayer([R1, R2])
# Cost function
dum = Th.vector('dum')
Ro = get_output(R) + eps
cost = Th.mean(_M * (Th.log(_M + eps) - Th.log(Ro)) - _M +
Ro) + 0 * Th.mean(dum) + sp * Th.mean(abs(H))
# Train it using Lasagne
opt = downhill.build(al, loss=cost, inputs=[dum], params=[H])
train = downhill.Dataset(array([0]).astype(float32), batch_size=0)
er = downhill_train(opt, train, hh, ep, None)
# Get outputs
_r = squeeze(nget(R, dum, array([0]).astype(float32))) + eps
_r1 = squeeze(nget(R1, dum, array([0]).astype(float32)))
_r2 = squeeze(nget(R2, dum, array([0]).astype(float32)))
return _r, _r1, _r2, er
def rnn_sep(M,
W1,
W2,
hh=.0001,
ep=5000,
d=0,
sp=.0001,
spb=3,
al='rmsprop',
t=5):
# Get dictionary shapes
K = [W1[0].shape[0], W2[0].shape[0]]
# GPU cached data
_M = theano.shared(M.T.astype(float32))
dum = Th.vector('dum')
# We have weights to discover
H = theano.shared(
sqrt(2. / (K[0] + K[1] + M.shape[1])) *
random.rand(M.T.shape[0], K[0] + K[1]).astype(float32))
fI = InputLayer(shape=(M.T.shape[0], K[0] + K[1]), input_var=H)
# Split in two pathways
fW1 = SliceLayer(fI, indices=slice(0, K[0]), axis=1)
fW2 = SliceLayer(fI, indices=slice(K[0], K[0] + K[1]), axis=1)
# Dropout?
dfW1 = DropoutLayer(fW1, dum[0])
dfW2 = DropoutLayer(fW2, dum[0])
# Compute source modulators using previously learned dictionaries
R1 = RecurrentLayer(dfW1,
num_units=M.T.shape[1],
b=None,
W_in_to_hid=W1[0].astype(float32),
W_hid_to_hid=W1[1].astype(float32),
nonlinearity=lambda x: psoftplus(x, spb),
gradient_steps=5)
R2 = RecurrentLayer(dfW2,
num_units=M.T.shape[1],
b=None,
W_in_to_hid=W2[0].astype(float32),
W_hid_to_hid=W2[1].astype(float32),
nonlinearity=lambda x: psoftplus(x, spb),
gradient_steps=5)
# Add the two approximations
R = ElemwiseSumLayer([R1, R2])
# Cost function
Ro = get_output(R) + eps
cost = (_M*(Th.log(_M+eps) - Th.log( Ro+eps)) - _M + Ro).mean() \
+ sp*Th.mean( abs( H)) + 0*Th.mean( dum)
# Train it using Lasagne
opt = downhill.build(al, loss=cost, inputs=[dum], params=[H])
train = downhill.Dataset(array([d]).astype(float32), batch_size=0)
er = downhill_train(opt, train, hh, ep, None)
# Get outputs
_r = nget(R, dum, array([0]).astype(float32)).T + eps
_r1 = nget(R1, dum, array([0]).astype(float32)).T
_r2 = nget(R2, dum, array([0]).astype(float32)).T
return _r, _r1, _r2, er
def nn_sep(M, W1, W2, hh=.0001, ep=5000, d=0, sp=.0001, spb=3, al='rprop'):
# Sort out the activation
from inspect import isfunction
if isfunction(spb):
act = spb
else:
act = lambda x: psoftplus(x, spb)
# Get dictionary shapes
K = [W1.shape[0], W2.shape[0]]
# GPU cached data
_M = theano.shared(M.T.astype(float64))
dum = Th.vector('dum')
# We have weights to discover
H = theano.shared(
sqrt(2. / (K[0] + K[1] + M.shape[1])) *
random.rand(M.T.shape[0], K[0] + K[1]).astype(float64))
fI = InputLayer(shape=(M.T.shape[0], K[0] + K[1]), input_var=H)
# Split in two pathways
fW1 = SliceLayer(fI, indices=slice(0, K[0]), axis=1)
fW2 = SliceLayer(fI, indices=slice(K[0], K[0] + K[1]), axis=1)
# Dropout?
dfW1 = DropoutLayer(fW1, dum[0])
dfW2 = DropoutLayer(fW2, dum[0])
# Compute source modulators using previously learned dictionaries
R1 = DenseLayer(dfW1,
num_units=M.T.shape[1],
W=W1.astype(float64),
nonlinearity=act,
b=None)
R2 = DenseLayer(dfW2,
num_units=M.T.shape[1],
W=W2.astype(float64),
nonlinearity=act,
b=None)
# Add the two approximations
R = ElemwiseSumLayer([R1, R2])
# Cost function
Ro = get_output(R) + eps
cost = (_M*(Th.log(_M+eps) - Th.log( Ro+eps)) - _M + Ro).mean() \
+ sp*Th.mean( abs( H)) + 0*Th.mean( dum)
# Train it using Lasagne
opt = downhill.build(al, loss=cost, inputs=[dum], params=[H])
#train = downhill.Dataset( array( [0]).astype(float32), batch_size=0)
if isinstance(d, list):
train = downhill.Dataset(array([d[0]]).astype(float64), batch_size=0)
er = downhill_train(opt, train, hh, ep / 2, None)
train = downhill.Dataset(array([d[1]]).astype(float64), batch_size=0)
er += downhill_train(opt, train, hh, ep / 2, None)
else:
train = downhill.Dataset(array([d]).astype(float64), batch_size=0)
er = downhill_train(opt, train, hh, ep, None)
# Get outputs
_r = nget(R, dum, array([0]).astype(float64)).T + eps
_r1 = nget(R1, dum, array([0]).astype(float64)).T
_r2 = nget(R2, dum, array([0]).astype(float64)).T
return _r, _r1, _r2, er
