def plot_integral(qa_dict,outfile,plotconf=None,hardplots=False):
import matplotlib.ticker as ticker
"""
Plot integral.
Args:
qa_dict: qa dictionary
outfile : output plot file
"""
expid=qa_dict["EXPID"]
camera=qa_dict["CAMERA"]
paname=qa_dict["PANAME"]
fig=plt.figure()
if plotconf:
hardplots=ql_qaplot(fig,plotconf,qa_dict,camera,expid,outfile)
if not hardplots:
pass
else:
ax1=fig.add_subplot(111)
integral=np.array(qa_dict["METRICS"]["SPEC_MAGS"])
plt.suptitle("Integrated Spectral Magnitudes, Camera: {}, ExpID: {}".format(paname,camera,expid),fontsize=10,y=0.99)
index=np.arange(len(integral))
hist_med=ax1.bar(index,integral,color='b',align='center')
ax1.set_xlabel('Fibers',fontsize=10)
ax1.set_ylabel('Integral (photon counts)',fontsize=10)
ax1.tick_params(axis='x',labelsize=10)
ax1.tick_params(axis='y',labelsize=10)
ax1.xaxis.set_major_locator(ticker.AutoLocator())
#ax1.set_xticklabels(std_fiberid)
plt.tight_layout()
fig.savefig(outfile)
def plot_countspectralbins(qa_dict,outfile,plotconf=None,hardplots=False):
"""
Plot count spectral bins.
Args:
qa_dict: dictionary of qa outputs from running qa_quicklook.CountSpectralBins
outfile: Name of figure.
"""
#SE: this has become a useless plot for showing a constant number now---> prevented creating it for now until there is an actual plan for what to plot
camera = qa_dict["CAMERA"]
expid=qa_dict["EXPID"]
paname=qa_dict["PANAME"]
thrcut=qa_dict["PARAMS"]["CUTBINS"]
fig=plt.figure()
if plotconf:
hardplots=ql_qaplot(fig,plotconf,qa_dict,camera,expid,outfile)
if not hardplots:
pass
else:
plt.suptitle("Fiber level check for flux after {}, Camera: {}, ExpID: {}".format(paname,camera,expid),fontsize=10,y=0.99)
goodfib=qa_dict["METRICS"]["GOOD_FIBERS"]
ngoodfib=qa_dict["METRICS"]["NGOODFIB"]
plt.plot(goodfib)
plt.ylim(-0.1,1.1)
plt.xlabel('Fiber #',fontsize=10)
plt.text(-0.5,1,r"NGOODFIB=%i"%(ngoodfib),ha='left',va='top',fontsize=10,alpha=2)
"""
gs=GridSpec(7,6)
ax1=fig.add_subplot(gs[:,:2])
ax2=fig.add_subplot(gs[:,2:4])
ax3=fig.add_subplot(gs[:,4:])
hist_med=ax1.bar(index,binslo,color='b',align='center')
ax1.set_xlabel('Fiber #',fontsize=10)
ax1.set_ylabel('Photon Counts > {:d}'.format(cutlo),fontsize=10)
ax1.tick_params(axis='x',labelsize=10)
ax1.tick_params(axis='y',labelsize=10)
ax1.set_xlim(0)
hist_med=ax2.bar(index,binsmed,color='r',align='center')
ax2.set_xlabel('Fiber #',fontsize=10)
ax2.set_ylabel('Photon Counts > {:d}'.format(cutmed),fontsize=10)
ax2.tick_params(axis='x',labelsize=10)
ax2.tick_params(axis='y',labelsize=10)
ax2.set_xlim(0)
hist_med=ax3.bar(index,binshi,color='g',align='center')
ax3.set_xlabel('Fiber #',fontsize=10)
ax3.set_ylabel('Photon Counts > {:d}'.format(cuthi),fontsize=10)
ax3.tick_params(axis='x',labelsize=10)
ax3.tick_params(axis='y',labelsize=10)
ax3.set_xlim(0)
"""
plt.tight_layout()
fig.savefig(outfile)
def plot_bias_overscan(qa_dict,outfile,plotconf=None,hardplots=False):
"""
Map of bias from overscan from 4 regions of CCD
Args:
qa_dict: qa dictionary from bias_from_overscan qa
outfile : pdf file of the plot
"""
expid = qa_dict["EXPID"]
camera = qa_dict["CAMERA"]
paname = qa_dict["PANAME"]
params = qa_dict["PARAMS"]
exptime = qa_dict["EXPTIME"]
if exptime == 0.:
exptime = 1.
fig=plt.figure()
if plotconf:
hardplots=ql_qaplot(fig,plotconf,qa_dict,camera,expid,outfile)
if not hardplots:
pass
else:
title="Bias from overscan region after {}, Camera: {}, ExpID: {}".format(paname,camera,expid)
plt.suptitle(title,fontsize=10,y=0.99)
ax1=fig.add_subplot(111)
ax1.set_xlabel("Avg. bias value per Amp (photon counts)",fontsize=10)
bias_amp=qa_dict["METRICS"]["BIAS_AMP"]
heatmap1=ax1.pcolor(bias_amp.reshape(2,2),cmap=plt.cm.OrRd)
ax1.tick_params(axis='x',labelsize=10,labelbottom=False)
ax1.tick_params(axis='y',labelsize=10,labelleft=False)
ax1.annotate("Amp 1\n{:.3f}".format(bias_amp[0]/exptime),
xy=(0.4,0.4),
fontsize=10
)
ax1.annotate("Amp 2\n{:.3f}".format(bias_amp[1]/exptime),
xy=(1.4,0.4),
fontsize=10
)
ax1.annotate("Amp 3\n{:.3f}".format(bias_amp[2]/exptime),
xy=(0.4,1.4),
fontsize=10
)
ax1.annotate("Amp 4\n{:.3f}".format(bias_amp[3]/exptime),
xy=(1.4,1.4),
fontsize=10
)
fig.savefig(outfile)
def plot_lpolyhist(qa_dict,outfile,plotconf=None,hardplots=False):
"""
Plot histogram for each legendre polynomial coefficient in WSIGMA array.
Args:
qa_dict: Dictionary of qa outputs from running qa_quicklook.Check_Resolution
outfile: Name of figure.
"""
paname = qa_dict["PANAME"]
p0 = qa_dict["DATA"]["LPolyCoef0"]
p1 = qa_dict["DATA"]["LPolyCoef1"]
p2 = qa_dict["DATA"]["LPolyCoef2"]
fig = plt.figure()
if plotconf:
hardplots=ql_qaplot(fig,plotconf,qa_dict,camera,expid,outfile)
if not hardplots:
pass
else:
plt.suptitle("{} QA Legendre Polynomial Coefficient Histograms".format(paname))
# Creating subplots
ax1 = fig.add_subplot(311)
n1, bins1, patches1 = ax1.hist(p0, bins=20, ec='black')
ax1.set_xticks(bins1[::3])
ax1.xaxis.set_major_formatter(FormatStrFormatter('%0.3f'))
ax1.set_xlabel('Zeroth Legendre Polynomial Coefficient (p0)')
ax1.set_ylabel('Frequency')
ax2 = fig.add_subplot(312)
n2, bins2, patches2 = ax2.hist(p1, bins=20, ec='black')
ax2.set_xticks(bins2[::3])
ax2.xaxis.set_major_formatter(FormatStrFormatter('%0.3f'))
ax2.set_xlabel('First Legendre Polynomial Coefficient (p1)')
ax2.set_ylabel('Frequency')
ax3 = fig.add_subplot(313)
n3, bins3, patches3 = ax3.hist(p2, bins=20, ec='black')
ax3.set_xticks(bins3[::3])
ax3.xaxis.set_major_formatter(FormatStrFormatter('%0.3f'))
ax3.set_xlabel('Second Legendre Polynomial Coefficient (p2)')
ax3.set_ylabel('Frequency')
plt.tight_layout()
plt.subplots_adjust(top=0.92)
fig.savefig(outfile)
def plot_bias_overscan(qa_dict,outfile,plotconf=None,hardplots=False):
"""
Map of bias from overscan from 4 regions of CCD
Args:
qa_dict: qa dictionary from bias_from_overscan qa
outfile : pdf file of the plot
"""
expid = qa_dict["EXPID"]
camera = qa_dict["CAMERA"]
paname = qa_dict["PANAME"]
params = qa_dict["PARAMS"]
exptime = qa_dict["EXPTIME"]
fig=plt.figure()
if plotconf:
hardplots=ql_qaplot(fig,plotconf,qa_dict,camera,expid,outfile)
if not hardplots:
pass
else:
title="Bias from overscan region after {}, Camera: {}, ExpID: {}".format(paname,camera,expid)
plt.suptitle(title,fontsize=10,y=0.99)
ax1=fig.add_subplot(111)
ax1.set_xlabel("Avg. bias value per Amp (photon counts)",fontsize=10)
bias_amp=qa_dict["METRICS"]["BIAS_AMP"]
heatmap1=ax1.pcolor(bias_amp.reshape(2,2),cmap=plt.cm.OrRd)
ax1.tick_params(axis='x',labelsize=10,labelbottom=False)
ax1.tick_params(axis='y',labelsize=10,labelleft=False)
ax1.annotate("Amp 1\n{:.3f}".format(bias_amp[0]/exptime),
xy=(0.4,0.4),
fontsize=10
)
ax1.annotate("Amp 2\n{:.3f}".format(bias_amp[1]/exptime),
xy=(1.4,0.4),
fontsize=10
)
ax1.annotate("Amp 3\n{:.3f}".format(bias_amp[2]/exptime),
xy=(0.4,1.4),
fontsize=10
)
ax1.annotate("Amp 4\n{:.3f}".format(bias_amp[3]/exptime),
xy=(1.4,1.4),
fontsize=10
)
fig.savefig(outfile)
def plot_sky_continuum(qa_dict,outfile,plotconf=None,hardplots=False):
"""
Plot mean sky continuum from lower and higher wavelength range for each
fiber and accross amps.
Args:
qa_dict: dictionary from sky continuum QA
outfile: pdf file to save the plot
"""
expid=qa_dict["EXPID"]
camera=qa_dict["CAMERA"]
paname=qa_dict["PANAME"]
fig=plt.figure()
if plotconf:
hardplots=ql_qaplot(fig,plotconf,qa_dict,camera,expid,outfile)
if not hardplots:
pass
else:
title="Mean Sky Continuum after {}, Camera: {}, ExpID: {}".format(paname,camera,expid)
xtitle="SKY fiber ID"
ytitle="Sky Continuum (photon counts)"
skycont_fiber=np.array(qa_dict["METRICS"]["SKYCONT_FIBER"])
fiberid=qa_dict["METRICS"]["SKYFIBERID"]
plt.suptitle(title,fontsize=10,y=0.99)
ax1=fig.add_subplot(111)
index=np.arange(len(skycont_fiber))
hist_med=ax1.bar(index,skycont_fiber,color='b',align='center')
ax1.set_xlabel(xtitle,fontsize=10)
ax1.set_ylabel(ytitle,fontsize=10)
ax1.tick_params(axis='x',labelsize=6)
ax1.tick_params(axis='y',labelsize=10)
ax1.set_xticks(index)
ax1.set_xticklabels(fiberid)
ax1.set_xlim(0)
plt.tight_layout()
fig.savefig(outfile)
def plot_sky_peaks(qa_dict,outfile,plotconf=None,hardplots=False):
"""
Plot rms of sky peaks for smy fibers across amps
Args:
qa_dict: dictionary from sky peaks QA
outfile: pdf file to save the plot
"""
expid=qa_dict["EXPID"]
camera=qa_dict["CAMERA"]
paname=qa_dict["PANAME"]
sumcount=qa_dict["METRICS"]["PEAKCOUNT_FIB"]
fiber=np.arange(sumcount.shape[0])
skyfiber_rms=qa_dict["METRICS"]["PEAKCOUNT_NOISE"]
fig=plt.figure()
if plotconf:
hardplots=ql_qaplot(fig,plotconf,qa_dict,camera,expid,outfile)
if not hardplots:
pass
else:
plt.suptitle("Counts for Sky Fibers after {}, Camera: {}, ExpID: {}".format(paname,camera,expid),fontsize=10,y=0.99)
ax1=fig.add_subplot(111)
hist_x=ax1.bar(fiber,sumcount,align='center')
ax1.set_xlabel("Fiber #",fontsize=10)
ax1.set_ylabel("Summed counts over sky peaks (photon counts)",fontsize=10)
ax1.tick_params(axis='x',labelsize=10)
ax1.tick_params(axis='y',labelsize=10)
plt.xlim(0,len(fiber))
plt.tight_layout()
fig.savefig(outfile)
def plot_countpix(qa_dict,outfile,plotconf=None,hardplots=False):
"""
Plot pixel counts above some threshold
Args:
qa_dict: qa dictionary from countpix qa
outfile: pdf file of the plot
"""
from desispec.util import set_backend
_matplotlib_backend = None
set_backend()
expid=qa_dict["EXPID"]
camera = qa_dict["CAMERA"]
paname=qa_dict["PANAME"]
#npix_amp=np.array(qa_dict["METRICS"]["NPIX_AMP"])
litfrac=np.array(qa_dict["METRICS"]["LITFRAC_AMP"])
cutthres=qa_dict["PARAMS"]["CUTPIX"]
fig=plt.figure()
if plotconf:
hardplots=ql_qaplot(fig,plotconf,qa_dict,camera,expid,outfile)
if not hardplots:
pass
else:
plt.suptitle("Fraction of pixels lit after {}, Camera: {}, ExpID: {}".format(paname,camera,expid),fontsize=10,y=0.99)
#ax1=fig.add_subplot(211)
#heatmap1=ax1.pcolor(npix_amp.reshape(2,2),cmap=plt.cm.OrRd)
##plt.title('Total Pixels > {:d} sigma = {:f}'.format(cutthres,countlo), fontsize=10)
#ax1.set_xlabel("# pixels > {:d} sigma (per Amp)".format(cutthres),fontsize=10)
#ax1.tick_params(axis='x',labelsize=10,labelbottom=False)
#ax1.tick_params(axis='y',labelsize=10,labelleft=False)
# ax1.annotate("Amp 1\n{:f}".format(npix_amp[0]),
# xy=(0.4,0.4),
# fontsize=10
# )
#ax1.annotate("Amp 2\n{:f}".format(npix_amp[1]),
# xy=(1.4,0.4),
# fontsize=10
# )
#ax1.annotate("Amp 3\n{:f}".format(npix_amp[2]),
# xy=(0.4,1.4),
# fontsize=10
# )
#ax1.annotate("Amp 4\n{:f}".format(npix_amp[3]),
# xy=(1.4,1.4),
# fontsize=10
# )
ax2=fig.add_subplot(111)
heatmap2=ax2.pcolor(litfrac.reshape(2,2),cmap=plt.cm.OrRd)
ax2.set_xlabel("Fraction over {:d} sigma read noise(per Amp)".format(cutthres),fontsize=10)
ax2.tick_params(axis='x',labelsize=10,labelbottom=False)
ax2.tick_params(axis='y',labelsize=10,labelleft=False)
ax2.annotate("Amp 1\n{:f}".format(litfrac[0]),
xy=(0.4,0.4),
fontsize=10
)
ax2.annotate("Amp 2\n{:f}".format(litfrac[1]),
xy=(1.4,0.4),
fontsize=10
)
ax2.annotate("Amp 3\n{:f}".format(litfrac[2]),
xy=(0.4,1.4),
fontsize=10
)
ax2.annotate("Amp 4\n{:f}".format(litfrac[3]),
xy=(1.4,1.4),
fontsize=10
)
plt.tight_layout()
fig.savefig(outfile)
def plot_SNR(qa_dict,outfile,objlist,fitsnr,rescut=0.2,sigmacut=2.,plotconf=None,hardplots=False):
"""
Plot SNR
Args:
qa_dict: dictionary of qa outputs from running qa_quicklook.Calculate_SNR
outfile: output png file
objlist: list of objtype for log(snr**2) vs. mag plots
badfibs: list of fibers with infs or nans to remove for plotting
fitsnr: list of snr vs. mag fitting coefficients # JXP -- THIS IS NOT TRUE!!
rescut: only plot residuals (+/-) less than rescut (default 0.2)
sigmacut: only plot residuals (+/-) less than sigma cut (default 2.0)
NOTE: rescut taken as default cut parameter
"""
med_snr=np.array(qa_dict["METRICS"]["MEDIAN_SNR"])
avg_med_snr=np.mean(med_snr)
index=np.arange(med_snr.shape[0])
resids= np.array(qa_dict["METRICS"]["SNR_RESID"])
camera = qa_dict["CAMERA"]
expid=qa_dict["EXPID"]
paname=qa_dict["PANAME"]
fig=plt.figure()
if plotconf:
hardplots=ql_qaplot(fig,plotconf,qa_dict,camera,expid,outfile)
if not hardplots:
pass
else:
ra=[]
dec=[]
mags=[]
snrs=[]
# Loop over object types
for oid, otype in enumerate(objlist):
mag=qa_dict["METRICS"]["SNR_MAG_TGT"][oid][1]
snr=qa_dict["METRICS"]["SNR_MAG_TGT"][oid][0]
mags.append(mag)
snrs.append(snr)
fibers = qa_dict['METRICS']['%s_FIBERID'%otype]
for c in range(len(fibers)):
ras = qa_dict['METRICS']['RA'][fibers[c]]
decs = qa_dict['METRICS']['DEC'][fibers[c]]
ra.append(ras)
dec.append(decs)
if rescut is None and sigmacut is not None:
range_min = np.mean(resids) - sigmacut * np.std(resids)
range_max = np.mean(resids) + sigmacut * np.std(resids)
for ii in range(len(resids)):
if resids[ii] <= range_min:
resids[ii] = range_min
elif resids[ii] >= range_max:
resids[ii] = range_max
if camera[0] == 'b':
thisfilter='DECAM_G'
elif camera[0] == 'r':
thisfilter='DECAM_R'
else:
thisfilter='DECAM_Z'
plt.suptitle("Signal/Noise after {}, Camera: {}, ExpID: {}".format(paname,camera,expid),fontsize=10,y=0.99)
rmneg=med_snr[med_snr>=0.]
rmind=index[med_snr>=0.]
ax1=fig.add_subplot(221)
hist_med=ax1.semilogy(rmind,rmneg,linewidth=1)
ax1.set_xlabel('Fiber #',fontsize=6)
ax1.set_ylabel('Median S/N',fontsize=8)
ax1.tick_params(axis='x',labelsize=6)
ax1.tick_params(axis='y',labelsize=6)
ax1.set_xlim(0)
ax2=fig.add_subplot(222)
ax2.set_title('Residual SNR: (calculated SNR - fit SNR) / fit SNR',fontsize=8)
ax2.set_xlabel('RA',fontsize=6)
ax2.set_ylabel('DEC',fontsize=6)
ax2.tick_params(axis='x',labelsize=6)
ax2.tick_params(axis='y',labelsize=6)
if rescut is not None:
resid_plot=ax2.scatter(ra,dec,s=2,c=resids,cmap=plt.cm.bwr,vmin=-rescut,vmax=rescut)
fig.colorbar(resid_plot,ticks=[-rescut,0.,rescut])
else:
resid_plot=ax2.scatter(ra,dec,s=2,c=resids,cmap=plt.cm.bwr)
fig.colorbar(resid_plot,ticks=[np.min(resids),0,np.max(resids)])
for i,otype in enumerate(objlist):
ax=fig.add_subplot('24{}'.format(i+5))
objtype=objlist[i]
objid=np.where(np.array(objlist)==objtype)[0][0]
obj_mag=mags[objid]
obj_snr=snrs[objid]
plot_mag=sorted(obj_mag)
#plot_fit=np.array(fitsnr[objid])**2
snr2=np.array(obj_snr)**2
fitval=qa_dict["METRICS"]["FITCOEFF_TGT"][objid]
# Calculate the model
flux = 10 ** (-0.4 * (np.array(plot_mag) - 22.5))
funcMap = s2n_funcs(exptime=qa_dict['METRICS']['EXPTIME'])
fitfunc = funcMap['astro']
plot_fit = fitfunc(flux, *fitval)
# Plot
if i == 0:
ax.set_ylabel('Median S/N**2',fontsize=8)
ax.set_xlabel('{} Mag ({})\na={:.4f}, B={:.1f}'.format(objtype,thisfilter,fitval[0],fitval[1]),fontsize=6)
if otype == 'STAR':
ax.set_xlim(16,20)
elif otype == 'BGS' or otype == 'MWS':
ax.set_xlim(14,24)
elif otype == 'QSO':
ax.set_xlim(17,23)
else:
ax.set_xlim(20,25)
ax.tick_params(axis='x',labelsize=6)
ax.tick_params(axis='y',labelsize=6)
ax.semilogy(obj_mag,snr2,'b.',markersize=1)
ax.semilogy(plot_mag,plot_fit**2,'y',linewidth=1)
fig.savefig(outfile)
def plot_residuals(frame,qa_dict,outfile,plotconf=None,hardplots=False):
import random
"""
Plot one random sky subtracted, fiber flattened spectrum per object type
Args:
frame: sframe object
qa_dict: qa dictionary
outfile : output plot file
"""
expid=qa_dict["EXPID"]
camera = qa_dict["CAMERA"]
paname=qa_dict["PANAME"]
med_resid_fiber=qa_dict["METRICS"]["MED_RESID_FIBER"]
med_resid_wave=qa_dict["METRICS"]["MED_RESID_WAVE"]
wavelength=qa_dict["METRICS"]["WAVELENGTH"]
flux=frame.flux
objects=frame.fibermap["OBJTYPE"]
objtypes=list(set(objects))
fig=plt.figure()
if plotconf:
hardplots=ql_qaplot(fig,plotconf,qa_dict,camera,expid,outfile)
if not hardplots:
pass
else:
plt.suptitle('Randomly selected sky subtracted, fiber flattenend spectra\ncamera {}, exposure, {}'.format(camera,expid),fontsize=10)
for i in range(len(objtypes)):
ax=fig.add_subplot('23{}'.format(i+1))
objs=np.where(objects==objtypes[i])[0]
obj=random.choice(objs)
objflux=flux[obj]
ax.set_xlabel('Wavelength (Angstroms)',fontsize=8)
ax.set_ylabel('{} Flux (counts)'.format(objtypes[i]),fontsize=8)
ax.tick_params(axis='x',labelsize=8)
ax.tick_params(axis='y',labelsize=8)
ax.plot(wavelength,objflux)
plt.tight_layout()
plt.subplots_adjust(top=0.9)
# gs=GridSpec(6,4)
# plt.suptitle("Sky Residuals after {}, Camera: {}, ExpID: {}".format(paname,camera,expid))
#
# ax0=fig.add_subplot(gs[:2,2:])
# ax0.set_axis_off()
# keys=["MED_RESID","NBAD_PCHI","NREJ","NSKY_FIB","RESID_PER"]
# skyfiberid=qa_dict["METRICS"]["SKYFIBERID"]
#
# xl=0.05
# yl=0.9
# for key in keys:
# ax0.text(xl,yl,key+': '+str(qa_dict["METRICS"][key]),transform=ax0.transAxes,ha='left',fontsize='x-small')
# yl=yl-0.1
#
# ax1=fig.add_subplot(gs[:2,:2])
# ax1.plot(wavelength, med_resid_wave,'b')
# ax1.set_ylabel("Med. Sky Res. (photon counts)",fontsize=10)
# ax1.set_xlabel("Wavelength(A)",fontsize=10)
# ax1.set_ylim(np.percentile(med_resid_wave,2.5),np.percentile(med_resid_wave,97.5))
# ax1.set_xlim(np.min(wavelength),np.max(wavelength))
# ax1.tick_params(axis='x',labelsize=10)
# ax1.tick_params(axis='y',labelsize=10)
#
# ax2=fig.add_subplot(gs[3:,:])
# index=range(med_resid_fiber.shape[0])
# hist_res=ax2.bar(index,med_resid_fiber,align='center')
# ax2.plot(index,np.zeros_like(index),'k-')
# #ax1.plot(index,med_resid_fiber,'bo')
# ax2.set_xlabel('Sky fiber ID',fontsize=10)
# ax2.set_ylabel('Med. Sky Res. (photon counts)',fontsize=10)
# ax2.tick_params(axis='x',labelsize=10)
# ax2.tick_params(axis='y',labelsize=10)
# ax2.set_xticks(index)
# ax2.set_xticklabels(skyfiberid)
# ax2.set_xlim(0)
# #plt.tight_layout()
fig.savefig(outfile)
def plot_RMS(qa_dict,outfile,plotconf=None,hardplots=False):
"""
Plot RMS
Args:
qa_dict: dictionary of qa outputs from running qa_quicklook.Get_RMS
outfile: Name of plot output file
"""
camera=qa_dict["CAMERA"]
expid=qa_dict["EXPID"]
pa=qa_dict["PANAME"]
fig=plt.figure()
if plotconf:
hardplots=ql_qaplot(fig,plotconf,qa_dict,camera,expid,outfile)
if not hardplots:
pass
else:
title="NOISE image counts per amplifier, Camera: {}, ExpID: {}".format(camera,expid)
rms_amp=qa_dict["METRICS"]["NOISE_AMP"]
ax1=fig.add_subplot(211)
rms_over_amp=qa_dict["METRICS"]["NOISE_OVERSCAN_AMP"]
plt.suptitle(title,fontsize=10,y=0.99)
heatmap1=ax1.pcolor(rms_amp.reshape(2,2),cmap=plt.cm.OrRd)
# ax1.set_xlabel("NOISE per Amp (photon counts)",fontsize=10)
ax1.tick_params(axis='x',labelsize=10,labelbottom=False)
ax1.tick_params(axis='y',labelsize=10,labelleft=False)
ax1.annotate("Amp 1\n{:.3f}".format(rms_amp[0]),
xy=(0.4,0.4),
fontsize=10
)
ax1.annotate("Amp 2\n{:.3f}".format(rms_amp[1]),
xy=(1.4,0.4),
fontsize=10
)
ax1.annotate("Amp 3\n{:.3f}".format(rms_amp[2]),
xy=(0.4,1.4),
fontsize=10
)
ax1.annotate("Amp 4\n{:.3f}".format(rms_amp[3]),
xy=(1.4,1.4),
fontsize=10
)
ax2=fig.add_subplot(212)
heatmap2=ax2.pcolor(rms_over_amp.reshape(2,2),cmap=plt.cm.OrRd)
ax2.set_xlabel("NOISE Overscan per Amp (photon counts)",fontsize=10)
ax2.tick_params(axis='x',labelsize=10,labelbottom=False)
ax2.tick_params(axis='y',labelsize=10,labelleft=False)
ax2.annotate("Amp 1\n{:.3f}".format(rms_over_amp[0]),
xy=(0.4,0.4),
fontsize=10
)
ax2.annotate("Amp 2\n{:.3f}".format(rms_over_amp[1]),
xy=(1.4,0.4),
fontsize=10
)
ax2.annotate("Amp 3\n{:.3f}".format(rms_over_amp[2]),
xy=(0.4,1.4),
fontsize=10
)
ax2.annotate("Amp 4\n{:.3f}".format(rms_over_amp[3]),
xy=(1.4,1.4),
fontsize=10
)
fig.savefig(outfile)
def plot_XWSigma(qa_dict,outfile,plotconf=None,hardplots=False):
"""
Plot XWSigma
Args:
qa_dict: qa dictionary from countpix qa
outfile : file of the plot
"""
camera=qa_dict["CAMERA"]
expid=qa_dict["EXPID"]
pa=qa_dict["PANAME"]
xsigma=np.array(qa_dict["METRICS"]["XWSIGMA_FIB"][0])
wsigma=np.array(qa_dict["METRICS"]["XWSIGMA_FIB"][1])
xsigma_med=qa_dict["METRICS"]["XWSIGMA"][0]
wsigma_med=qa_dict["METRICS"]["XWSIGMA"][1]
xfiber=np.arange(xsigma.shape[0])
wfiber=np.arange(wsigma.shape[0])
fig=plt.figure()
if plotconf:
hardplots=ql_qaplot(fig,plotconf,qa_dict,camera,expid,outfile)
if not hardplots:
pass
else:
plt.suptitle("X & W Sigma over sky peaks, Camera: {}, ExpID: {}".format(camera,expid),fontsize=10,y=0.99)
ax1=fig.add_subplot(221)
hist_x=ax1.bar(xfiber,xsigma,align='center')
ax1.set_xlabel("Fiber #",fontsize=10)
ax1.set_ylabel("X std. dev. (# of pixels)",fontsize=10)
ax1.tick_params(axis='x',labelsize=10)
ax1.tick_params(axis='y',labelsize=10)
plt.xlim(0,len(xfiber))
ax2=fig.add_subplot(222)
hist_w=ax2.bar(wfiber,wsigma,align='center')
ax2.set_xlabel("Fiber #",fontsize=10)
ax2.set_ylabel("W std. dev. (# of pixels)",fontsize=10)
ax2.tick_params(axis='x',labelsize=10)
ax2.tick_params(axis='y',labelsize=10)
plt.xlim(0,len(wfiber))
if "XWSIGMA_AMP" in qa_dict["METRICS"]:
xsigma_amp=qa_dict["METRICS"]["XWSIGMA_AMP"][0]
wsigma_amp=qa_dict["METRICS"]["XWSIGMA_AMP"][1]
ax3=fig.add_subplot(223)
heatmap3=ax3.pcolor(xsigma_amp.reshape(2,2),cmap=plt.cm.OrRd)
plt.title('X Sigma = {:.4f}'.format(xsigma_med), fontsize=10)
ax3.set_xlabel("X std. dev. per Amp (# of pixels)",fontsize=10)
ax3.tick_params(axis='x',labelsize=10,labelbottom=False)
ax3.tick_params(axis='y',labelsize=10,labelleft=False)
ax3.annotate("Amp 1\n{:.3f}".format(xsigma_amp[0]),
xy=(0.4,0.4),
fontsize=10
)
ax3.annotate("Amp 2\n{:.3f}".format(xsigma_amp[1]),
xy=(1.4,0.4),
fontsize=10
)
ax3.annotate("Amp 3\n{:.3f}".format(xsigma_amp[2]),
xy=(0.4,1.4),
fontsize=10
)
ax3.annotate("Amp 4\n{:.3f}".format(xsigma_amp[3]),
xy=(1.4,1.4),
fontsize=10
)
ax4=fig.add_subplot(224)
heatmap4=ax4.pcolor(wsigma_amp.reshape(2,2),cmap=plt.cm.OrRd)
plt.title('W Sigma = {:.4f}'.format(wsigma_med), fontsize=10)
ax4.set_xlabel("W std. dev. per Amp (# of pixels)",fontsize=10)
ax4.tick_params(axis='x',labelsize=10,labelbottom=False)
ax4.tick_params(axis='y',labelsize=10,labelleft=False)
ax4.annotate("Amp 1\n{:.3f}".format(wsigma_amp[0]),
xy=(0.4,0.4),
fontsize=10
)
ax4.annotate("Amp 2\n{:.3f}".format(wsigma_amp[1]),
xy=(1.4,0.4),
fontsize=10
)
ax4.annotate("Amp 3\n{:.3f}".format(wsigma_amp[2]),
xy=(0.4,1.4),
fontsize=10
)
ax4.annotate("Amp 4\n{:.3f}".format(wsigma_amp[3]),
xy=(1.4,1.4),
fontsize=10
)
plt.tight_layout()
fig.savefig(outfile)
