def __init__(self, user_url):
self.user_url = user_url
self.user_network = DirectedGraph()
self.user = User(user_url)
self.user.make_followers()
self.user.make_following()
def import_graph(self, file_name, process=lambda progress: None):
try:
file_graph = open(file_name + ".txt", "r")
lines = file_graph.readlines()
first_line = lines.pop(0).strip()
graph_params = first_line.split()
imported_graph = DirectedGraph(int(graph_params[0]))
total_lines = len(lines)
last_percent = 0
for index, line in enumerate(lines):
new_percent = index * 100 // total_lines
if last_percent != new_percent:
process(new_percent)
last_percent = new_percent
data = line.strip().split(" ")
imported_graph.add_edge(int(data[0]), int(data[1]),
int(data[2]))
self.graphs.append(imported_graph)
file_graph.close()
except FileNotFoundError:
raise Exception("File '" + file_name + "' not found")
def setUp(self):
self.graph = DirectedGraph()
self.nodeA = "A"
self.nodeB = "B"
self.nodeC = "C"
self.nodeD = "D"
self.nodeE = "E"
def inOutDegree(graph: DirectedGraph):
'''
Function that calculate in and out dege
'''
vertex = int(input(" vertex : "))
print("OUT degree:", graph.outDegreeOf(vertex))
print("IN degree:", graph.inDegreeOf(vertex), "\n")
def read_graph(filename='graph.txt'):
file = open(filename, 'r')
# read the first line containing the number of vertices and number of edges
line = file.readline()
# remove the newline from the end of the string and splitting its parameters
line = line.strip('\n')
line = line.split(' ')
if len(line) != 2:
raise ValueError('invalid number of vertices and edges')
vertices = int(line[0])
edges = int(line[1])
# create a directed graph with given vertices
graph = DirectedGraph(vertices)
for i in range(edges):
edge = file.readline()
edge = edge.strip('\n')
edge = edge.split(' ')
if len(edge) != 3:
raise ValueError('invalid line in file!')
start_vertex = int(edge[0])
end_vertex = int(edge[1])
cost = int(edge[2])
graph.add_edge(start_vertex, end_vertex, cost)
file.close()
return deepcopy(graph)
def test_in_degree_directed(self):
graph = DirectedGraph(7)
graph.add_edge(0, 1)
graph.add_edge(0, 5)
self.assertEqual(graph.in_degree(0), 0)
self.assertEqual(graph.in_degree(1), 1)
self.assertEqual(graph.in_degree(1), 1)
def modifyCost(graph: DirectedGraph):
'''
Function that modify the cost of an edge
'''
edgeID = int(input(" edge id : "))
newCost = int(input(" new cost : "))
graph.modifyCostOf(edgeID, newCost)
print("The new cost of {0} is {1}\n".format(edgeID, graph.getCostOf(edgeID)))
def removeEdge(graph: DirectedGraph):
'''
Function that remove an edge
'''
vS = int(input(" starting edge : "))
vE = int(input(" end edge : "))
graph.removeEdge(vS, vE)
print("Edge {0} -> {1} deleted!".format(vS, vE))
def setUp(self):
self.fr = DirectedGraph()
self.fr.add_edge('sten', 'sho')
self.fr.add_edge('sten', 'agito')
self.fr.add_edge('sho', 'zina')
self.fr.add_edge('sho', 'tom')
self.fr.add_edge('tom', 'jerry')
self.fr.add_edge('zina', 'agito')
self.fr.add_edge('zina', 'sho')
def EM_run_0(): print "BFS test" graph = DirectedGraph(5, [0.5 ,0.5]) graph.draw_edge(0, 2) graph.draw_edge(1, 2) graph.draw_edge(2, 3) graph.draw_edge(2, 4) graph.all_nodes[1].count_all_predecessor()
class TestGraph(unittest.TestCase):
def setUp(self):
self.graph = DirectedGraph()
self.graph.add_edge('Ivan', 'Ivo')
self.graph.add_edge('Ivan', 'Joro')
self.graph.add_edge('Joro', 'Krasi')
self.graph.add_edge('Krasi', 'Rado')
def test_add_edge(self):
self.assertIn('Ivan', self.graph.nodes)
self.assertIn('Ivo', self.graph.nodes)
self.assertIn('Ivo', self.graph.nodes['Ivan'])
def test_get_neighbours_for(self):
self.assertSetEqual(
self.graph.get_neighbours_for('Ivan'), {'Ivo', 'Joro'})
def test_path_between_exists(self):
self.assertTrue(self.graph.path_between('Ivan', 'Rado'))
def test_path_between_not_exist(self):
self.assertFalse(self.graph.path_between('Krasi', 'Joro'))
def test_str_graph(self):
print(self.graph)
class TestGraph(unittest.TestCase):
def setUp(self):
self.graph = DirectedGraph()
self.graph.add_edge('Ivan', 'Ivo')
self.graph.add_edge('Ivan', 'Joro')
self.graph.add_edge('Joro', 'Krasi')
self.graph.add_edge('Krasi', 'Rado')
def test_add_edge(self):
self.assertIn('Ivan', self.graph.nodes)
self.assertIn('Ivo', self.graph.nodes)
self.assertIn('Ivo', self.graph.nodes['Ivan'])
def test_get_neighbours_for(self):
self.assertSetEqual(self.graph.get_neighbours_for('Ivan'),
{'Ivo', 'Joro'})
def test_path_between_exists(self):
self.assertTrue(self.graph.path_between('Ivan', 'Rado'))
def test_path_between_not_exist(self):
self.assertFalse(self.graph.path_between('Krasi', 'Joro'))
def test_str_graph(self):
print(self.graph)
def test_dfs_directed(self):
graph = DirectedGraph(7)
graph.add_edge(0, 6)
graph.add_edge(0, 2)
graph.add_edge(0, 1)
graph.add_edge(0, 5)
graph.add_edge(6, 4)
graph.add_edge(4, 5)
graph.add_edge(4, 3)
graph.add_edge(5, 3)
self.assertEqual(graph.dfs(0), [None, 0, 0, 5, 6, 4, 0])
def test_bfs_directed(self):
graph = DirectedGraph(6)
graph.add_edge(0, 2)
graph.add_edge(0, 1)
graph.add_edge(0, 5)
graph.add_edge(2, 1)
graph.add_edge(2, 3)
graph.add_edge(2, 4)
graph.add_edge(4, 3)
graph.add_edge(5, 3)
self.assertEqual(graph.bfs(0), [None, 0, 0, 2, 2, 0])
def addVertex(graph: DirectedGraph):
'''
Function that add a vertex
'''
while True:
vertex = int(input(" vertex id : "))
if graph.vertexExists(vertex):
print("This vertex already exists!")
else:
graph.addVertex(vertex)
print("The new vertex is named ", graph.vertices)
break
def removeVertex(graph: DirectedGraph):
'''
Function that remove a vertex
'''
while True:
vertex = int(input(" vertex id : "))
if graph.vertexExists(vertex):
graph.removeVertex(vertex)
print("Deletion completed")
break
else:
print("This vertex does not exists!")
def edgeBetween(graph: DirectedGraph):
'''
Functions that check if there is an edge between 2 vertex
'''
x = int(input(" vertexStart : "))
y = int(input(" vertexIn : "))
if graph.vertexExists(x) and graph.vertexExists(y):
if graph.isEdge(x, y):
print("There is an edge!\n")
else:
print("There is not an edge!\n")
else:
print("One or both vertices does not exists!")
def addEdge(graph: DirectedGraph):
'''
Function that add an edge
'''
while True:
vS = int(input(" starting edge : "))
vE = int(input(" end edge : "))
cost = int(input(" cost : "))
id = int(input(" id : "))
try:
graph.addEdge(vS, vE, cost, id)
break
except Exception as ex:
print(ex)
def get_order(self, dict):
"""
:param dict: List[String]
:return: List[String]
"""
g = DirectedGraph(26)
for i in range(0, len(dict)-1):
self.build_graph(g, dict[i], dict[i+1])
# order must exist, no need to check cycle
order = g.topo_sort()
ret = []
for c in order:
ret.append(chr(c + ord('a')))
return ret
class GetFollowers():
def __init__(self):
self.dict_of_following = {}
self.list_of_follwoers_names = []
self.dg = DirectedGraph()
def folling(self, user_name):
git_user_url = "https://api.github.com/users/{}/following".format(user_name)
my_request = requests.get(git_user_url, auth=(TOKEN, ''))
#print(my_request.encoding)
if my_request.status_code == 200:
self.dict_of_following = my_request.json()
#print(self.dict_of_following)
self.list_of_follwoers_names = []
for user in self.dict_of_following:
self.list_of_follwoers_names.append(user["login"])
return self.list_of_follwoers_names
else:
print("f**k you")
def metoda(self, user):
for follower in self.folling(user):
self.dg.add_edge(user, follower)
for follower2 in self.folling(follower):
self.dg.add_edge(follower, follower2)
for follower3 in self.folling(follower2):
self.dg.add_edge(follower2, follower3)
for follower4 in self.folling(follower3):
self.dg.add_edge(follower3, follower4)
def print_following(self):
for person in self.dict_of_following:
print(person["login"])
class DirectedGraphTestClass(unittest.TestCase):
def setUp(self):
self.test_graph_info = {"a": ["b", "c"], "b": ["c"], "c": ["d"], "d": []}
self.test_graph = DirectedGraph()
self.test_graph.graph = self.test_graph_info
def test_init(self):
self.assertTrue(isinstance(self.test_graph, DirectedGraph))
def test_add_node(self):
self.test_graph.add_node("p")
self.assertTrue("p" in self.test_graph.graph.keys())
def test_add_edge(self):
self.test_graph.add_edge("c", "a")
self.assertTrue("a" in self.test_graph.graph["c"])
def test_get_neighbours_for(self):
self.assertEqual(self.test_graph.get_neighbours_for("a"), ["b", "c"])
def test_path_between(self):
self.assertTrue(self.test_graph.path_between("b", "c"))
self.assertFalse(self.test_graph.path_between("c", "b"))
self.assertTrue(self.test_graph.path_between("a", "d"))
class GithubFollowGraph:
FOLLOWING_URL = 'https://api.github.com/users/{}/following'
with open('token.txt', 'r') as token_file:
content = token_file.readline()[:-1]
token = (content, '')
def __init__(self, username, depth):
self.graph = DirectedGraph()
self.main_user = username
self.depth = depth
followers = [self.main_user]
current_depth = 0
while current_depth < depth:
new_followers = []
for follower in followers:
followings = GithubFollowGraph._get_following(follower)
new_followers.extend(followings)
for following in followings:
self.graph.add_edge(follower, following)
followers = new_followers
current_depth += 1
@staticmethod
def _get_following(username):
url = GithubFollowGraph.FOLLOWING_URL.format(username)
request = requests.get(url, auth=GithubFollowGraph.token)
request.raise_for_status()
following = [person['login'] for person in request.json()]
return following
def following(self):
return list(self.graph.get_neighbours_for(self.main_user))
def is_following(self, username):
return username in self.following()
def steps_to(self, username):
last_level = [self.main_user]
counter = 0
while counter <= self.depth:
next_level = set()
if username in last_level:
return counter
for person in last_level:
next_level = next_level.union(
self.graph.get_neighbours_for(person))
last_level = next_level
counter += 1
return 0
def transposeGraph(graph: DirectedGraph) -> DirectedGraph:
new_graph = DirectedGraph()
for vertex_id in graph.vertices:
new_graph.addVertex(vertex_id, graph.getVertexLabel(vertex_id))
for vertex_id in graph.vertices:
for vertex_neighbor_id in graph.getVertexNeighbors(vertex_id):
new_graph.addEdge(vertex_neighbor_id, vertex_id, graph.weight(vertex_id, vertex_neighbor_id))
return new_graph
def __init__(self, username, depth):
self.graph = DirectedGraph()
self.main_user = username
self.depth = depth
followers = [self.main_user]
current_depth = 0
while current_depth < depth:
new_followers = []
for follower in followers:
followings = GithubFollowGraph._get_following(follower)
new_followers.extend(followings)
for following in followings:
self.graph.add_edge(follower, following)
followers = new_followers
current_depth += 1
def setUp(self):
self.graph = DirectedGraph()
self.graph.add_edge("Pesho", "Ivo")
self.graph.add_edge("Ivan", "Ivo")
self.graph.add_edge("Gosho", "Ivo")
self.graph.add_edge("Ivan", "Pesho")
self.graph.add_edge("Ivo", "Ivan")
def endpointsOfEdge(graph: DirectedGraph):
'''
Function that prints the endpoints of an edge
'''
edgeID = int(input(" edge id : "))
print("The endpoints of edge with ID {0} are:".format(edgeID),
graph.getEndpointsOf(edgeID), "\n")
def main():
'''
Main program
'''
graph = DirectedGraph("graph1k.txt")
#print(graph)
cmdDict = {0: UI.exitApp,
1: UI.nrOfVertices,
2: UI.edgeBetween,
3: UI.inOutDegree,
4: UI.outboundEdges,
5: UI.inboundEdges,
6: UI.endpointsOfEdge,
7: UI.retriveCost,
8: UI.modifyCost,
9: UI.addVertex,
10: UI.removeVertex,
11: UI.addEdge,
12: UI.removeEdge,
13: UI.saveGraph,
14: UI.printMenu}
UI.printMenu()
UI.Print(graph)
while True:
try:
cmd = UI.readCommand()
cmdDict[cmd](graph)
except Exception as ex:
traceback.print_exc()
print(ex)
def create_random_graph(vertices, edges):
"""
creates random graph with the number of vertices and edges given.
:param vertices: number of vertices
:param edges: number of edges
:return:
"""
graph = DirectedGraph(vertices)
number_of_edges = 0
while number_of_edges < edges:
x = randint(0, vertices - 1)
y = randint(0, vertices - 1)
if not graph.is_edge_between(x, y):
graph.add_edge(x, y, randint(0, 1000))
number_of_edges += 1
return deepcopy(graph)
def deepFirstSearch(graph: DirectedGraph, init_vertex_id: str, visited: set) -> list:
result_search = [init_vertex_id]
visited.add(init_vertex_id)
for vertex_id in graph.getVertexNeighbors(init_vertex_id):
if vertex_id not in visited:
result_search += deepFirstSearch(graph, vertex_id, visited)
return result_search
def retriveCost(graph: DirectedGraph):
'''
Function that print the cost of an edge
'''
edgeID = int(input(" edge id : "))
print("The cost of edge with ID {0} is:".format(edgeID),
graph.getCostOf(edgeID), "\n")
def inboundEdges(graph: DirectedGraph):
'''
Function that prints the inbound edges of a vertex
'''
vertex = int(input(" vertex : "))
print("Inbound edges of {0}:".format(vertex),
graph.inboundEdgesOf(vertex), "\n")
def run():
graph = DirectedGraph()
#random_graph(graph, 100, 10)
load_from_file(graph, "graph5.txt")
service = Service(graph)
ui = UI(graph, service)
ui.run()
save_to_file(graph, "graph_out.txt")
def save_to_file(graph: DirectedGraph, file_name: str):
with open(file_name, 'w') as data_file:
output = f"{graph.vertices_count} {graph.edges_count}\n"
for edge in graph.parse_edges():
output += f"{edge.start} {edge.end} {edge.cost}\n"
data_file.write(output)
def worker_task(i):
global logger
if logger is None:
logging.basicConfig(
format=
"%(asctime)s [%(process)-4.4s--%(threadName)-12.12s] [%(levelname)-5.5s] %(message)s"
)
fileHandler = logging.FileHandler('RD_log.log.{}'.format(os.getpid()),
mode='w')
logger = logging.getLogger()
logger.addHandler(fileHandler)
logger.setLevel(logging.DEBUG)
random.seed(datetime.now())
start_time = time.time()
rounds = 10
NODES = 7115
min_edges = 75000
max_edges = 125000
incr = 0.001
p = random.uniform(0.0015, 0.0024) # probability
seed = 100
logger.info("# iteration {}".format(i + 1))
graph = None
edges, avgc = -1, -1
while p > 0:
logger.info("generating graph with N={} p={}".format(NODES, p))
graph = DirectedGraph.randomDirectedGraph(NODES, p)
edges = graph.size()[1]
avgc = graph.toUndirect().average_clustering()
logger.info("prob={} edges={}".format(p, edges))
if edges >= min_edges and edges <= max_edges:
break
# avgc = graph.average_clustering()
# logger.info("** avgc={}".format(avgc))
# if avgc >= 0.1 and avgc <= 0.2:
# break
# elif avgc > 0.2:
# p += ((max_edges - edges) / min_edges * 10.0) * incr
# else:
# p += ((min_edges - edges) / min_edges * 10.0) * incr
elif edges > max_edges:
p += ((max_edges - edges) / min_edges) * incr
else:
p += ((min_edges - edges) / min_edges) * incr
sys.stdout.flush()
#graph.setLogger(logger)
ret = experiment(graph, seed, rounds)
elapsed = time.time() - start_time
ret.append((edges, avgc, elapsed))
logger.info("# iteration %d done in %f" %
(i + 1, time.time() - start_time))
logger.info("# {}".format(ret))
#gc.collect()
#return [(lin_max_seed, max_lin_influenced), (eigenc_max_seed, max_eigenc_influenced), (bet_max_seed, max_bet_influenced)]
return ret
def deepFirstSearchWithInverseOrder(graph: DirectedGraph, initial_vertex: str,
stack: list, visited: set):
visited.add(initial_vertex)
for vertex_id in graph.getVertexNeighbors(initial_vertex):
if vertex_id not in visited:
deepFirstSearchWithInverseOrder(graph, vertex_id, stack, visited)
stack.insert(0, initial_vertex)
def setUp(self):
self.fr = DirectedGraph()
self.fr.add_edge('sten', 'sho')
self.fr.add_edge('sten', 'agito')
self.fr.add_edge('sho', 'zina')
self.fr.add_edge('sho', 'tom')
self.fr.add_edge('tom', 'jerry')
self.fr.add_edge('zina', 'agito')
self.fr.add_edge('zina', 'sho')
def setUp(self):
self.graph = DirectedGraph()
self.graph.add_edge("Pesho", "Tisho")
self.graph.add_edge("Pesho", "Gosho")
self.graph.add_edge("Tisho", "Grisho")
self.graph.add_edge("Rafa", "Grisho")
self.graph.add_edge("Grisho", "Tisho")
self.graph.add_edge("Grisho", "Rafa")
self.graph.get_neighbors_for("Grisho")
self.graph.path_between("Pesho", "Rafa")
class GitHubNetwork:
def __init__(self, user_url):
self.user_url = user_url
self.user_network = DirectedGraph()
self.user = User(user_url)
self.user.make_followers()
self.user.make_following()
def build_network(self, user_url, level):
current_level = 0
visited = set()
visited.add(self.user)
queue = []
queue.append((current_level, self.user), )
while len(queue) != 0:
current_level, current_user = queue.pop(0)
if current_level + 1 > level:
break
current_user.make_followers()
current_user_followers = current_user.get_followers()
current_user.make_following()
current_user_following = current_user.get_following()
for follower in current_user_followers:
if follower not in visited:
self.user_network.add_edge(current_user, follower)
queue.append((current_level + 1, follower), )
visited.add(follower)
for following in current_user_following:
if following not in visited:
self.user_network.add_edge(following, current_user)
queue.append((current_level + 1, follower), )
visited.add(follower)
def do_you_follow(self, user_followed):
return self.user_network.edge_between(self.user, user_followed)
def do_you_follow_indirectly(self, user_following):
return self.user_network.path_between(self.user, user_following)
def does_he_she_follows(self, user_following):
self.user.make_following()
if user_following.login in self.user.get_following():
return True
else:
return False
def does_he_she_follow_indirectly(self, user_following):
return self.user_network.path_between(user_following, self.user)
def worker_task(i):
global logger
if logger is None:
logging.basicConfig(format="%(asctime)s [%(process)-4.4s--%(threadName)-12.12s] [%(levelname)-5.5s] %(message)s")
fileHandler = logging.FileHandler('RD_log.log.{}'.format(os.getpid()),mode='w')
logger=logging.getLogger()
logger.addHandler(fileHandler)
logger.setLevel(logging.DEBUG)
random.seed(datetime.now())
start_time = time.time()
rounds = 10
NODES = 7115
min_edges = 75000
max_edges = 125000
incr = 0.001
p = random.uniform(0.0015, 0.0024) # probability
seed = 100
logger.info("# iteration {}".format(i+1))
graph = None
edges, avgc = -1, -1
while p > 0:
logger.info("generating graph with N={} p={}".format(NODES, p))
graph = DirectedGraph.randomDirectedGraph(NODES, p)
edges = graph.size()[1]
avgc = graph.toUndirect().average_clustering()
logger.info("prob={} edges={}".format(p, edges))
if edges >= min_edges and edges <= max_edges:
break
# avgc = graph.average_clustering()
# logger.info("** avgc={}".format(avgc))
# if avgc >= 0.1 and avgc <= 0.2:
# break
# elif avgc > 0.2:
# p += ((max_edges - edges) / min_edges * 10.0) * incr
# else:
# p += ((min_edges - edges) / min_edges * 10.0) * incr
elif edges > max_edges:
p += ((max_edges - edges) / min_edges) * incr
else:
p += ((min_edges - edges) / min_edges) * incr
sys.stdout.flush()
#graph.setLogger(logger)
ret = experiment(graph, seed, rounds)
elapsed = time.time() - start_time
ret.append((edges, avgc, elapsed))
logger.info("# iteration %d done in %f" % (i+1, time.time() - start_time))
logger.info("# {}".format(ret))
#gc.collect()
#return [(lin_max_seed, max_lin_influenced), (eigenc_max_seed, max_eigenc_influenced), (bet_max_seed, max_bet_influenced)]
return ret
def topologialSort(graph: DirectedGraph) -> str:
stack = list()
visited = set()
for vertex_id in graph.vertices:
if vertex_id not in visited:
deepFirstSearchWithInverseOrder(graph, vertex_id, stack, visited)
stack_labels = list()
for vertex_id in stack:
stack_labels.append(graph.getVertexLabel(vertex_id))
return ' -> '.join(stack_labels) + '\n'
def load_activities(graph: DirectedGraph, file_name: str):
with open(file_name, 'r') as data_file:
first_line = data_file.readline()
activity_count = first_line
activity_count = int(activity_count)
for i in range(activity_count + 1):
graph.add_vertex(i)
for i, line in enumerate(data_file):
(prerequisites_str, duration) = line.split(' ')
prerequisites_str = prerequisites_str.split(',')
prerequisites = []
for prerequisite_str in prerequisites_str:
prerequisites.append(int(prerequisite_str))
duration = int(duration)
for prerequisite in prerequisites:
graph.add_edge(prerequisite, i + 1, duration)
def buildGraphFromFile(file_path: str, is_directed: bool = False):
graph_file = open(file_path, 'r')
if is_directed:
graph = DirectedGraph()
else:
graph = NotDirectedGraph()
graph_file.readline() #ignoring first line
build_vertices = True
for line in graph_file:
line = line.rstrip("\n\r").rstrip(' ') #remove new line character and spaces in the end of the line
if build_vertices:
if line in {"*edges"} or line in {"*arcs"}:
build_vertices = False
else:
try:
splittedLine = line.split(' ', 1)
if len(splittedLine) == 2:
vertexId = splittedLine[0]
vertexName = splittedLine[1].replace("\"", "")
graph.addVertex(vertexId, vertexName)
else:
raise Exception("Error while building vertex (graph = "+file_path+"): \""+line+"\" isn't in the default template: (id label)")
except Exception as error:
print("(graph = "+file_path+"):"+str(error))
return NotDirectedGraph()
else:
try:
splittedLine = line.split(' ')
if len(splittedLine) == 3:
origin_vertex_id = splittedLine[0]
destiny_vertex_id = splittedLine[1]
edge_weight = float(splittedLine[2])
graph.addEdge(origin_vertex_id, destiny_vertex_id, edge_weight)
else:
raise Exception("Error while building edge (graph = "+file_path+"): \""+line+"\" isn't in the default template: (id id weight)")
except ValueError:
print("Error while building edge (graph = "+file_path+"): \""+splittedLine[2]+"\" (your weight) isn't a float")
return NotDirectedGraph()
except Exception as error:
print("(graph = "+file_path+"): "+str(error))
return NotDirectedGraph()
return graph
class GitHubSocialNetwork:
def __init__(self, user):
self.user = user
self.graph = DirectedGraph()
def __followers_caller(self, user):
client_id = "f8be3d072416ea05b379"
client_secret = "63f1f862a9c6c2b892dcc577f462b1cb0f095722"
data = 'https://api.github.com/users/{}/following'.format(user)
data += '?client_id={}&client_secret={}'.format(client_id, client_secret)
return data
def __graph_level_builder(self, user, graph):
r = requests.get(self.__followers_caller(user))
for follower in json.loads(r.text):
graph.add_edge(user, follower["login"])
def __graph_builder(self, user, depth, graph, max_depth):
if (depth > max_depth):
return
self.__graph_level_builder(user, graph)
for follower in graph.graph[user]:
self.__graph_builder(follower, depth + 1, graph, max_depth)
def __graph_init(self, max_depth):
if (max_depth >= 4):
raise ValueError("So Deep")
self.__graph_builder(self.user, 0, self.graph, max_depth)
def following(self):
graph = DirectedGraph()
self.__graph_level_builder(self.user, graph)
return graph.graph[self.user]
def is_following(self, followed):
return followed in self.following()
def steps_to(self, username):
self.__graph_init(3)
return self.graph.steps_between(self.user, username)
def EM_run_8(): print "\n\n!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!" print "Experiment run 8: [tt, tf, ft, ff] = [0.9, 0.6, 0.3, 0.2]" print "Multiple recovery" print "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!" graph = DirectedGraph(5, [0.5 ,0.5]) graph.draw_edge(0, 2) graph.draw_edge(1, 2) graph.draw_edge(2, 3) graph.draw_edge(2, 4) graph.init_CPT() graph.set_node_est_CPT(0, [0.1]) graph.set_node_est_CPT(1, [0.2]) graph.set_node_est_CPT(2, [0.2, 0.3, 0.6, 0.9]) #graph.set_node_est_CPT(2, [0.1, 0.1, 0.2, 0.2]) graph.set_node_est_CPT(3, [0.2, 0.9]) graph.set_node_est_CPT(4, [0.1, 0.8]) ''' samples = [] for i in range(100): curr_sample = [] for j in range(5): curr_sample.append(round(random.random(), 0)) samples.append(curr_sample) samples = np.array(samples, dtype=np.int64) ''' samples = np.array([[0, 0, 0, 0, 0], [0, 0, 0, 1, 0], [1, 0, 0, 1, 1], [0, 0, 0, 0, 1], [0, 1, 1, 1, 0], [0, 0, 0, 0, 1], [1, 1, 0, 1, 1], [0, 0, 0, 0, 0], [0, 0, 1, 1, 0], [0, 0, 0, 0, 1]]) graph.EM(samples, 2, 10000) graph.EM(samples, 3, 10000)
def EM_run_9():
print "\n\n!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"
print "Experiment run 9: [tt, tf, ft, ff] = [0.9, 0.6, 0.3, 0.2]"
print "RANDOM DATA - Varying Sample size (double)"
print "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"
iters = 0
simulations = 1000
runs = []
for i in range(simulations):
graph = DirectedGraph(5, [0.5 ,0.5])
graph.draw_edge(0, 2)
graph.draw_edge(1, 2)
graph.draw_edge(2, 3)
graph.draw_edge(2, 4)
graph.init_CPT()
graph.set_node_est_CPT(0, [0.1])
graph.set_node_est_CPT(1, [0.2])
graph.set_node_est_CPT(2, [0.2, 0.3, 0.6, 0.9])
graph.set_node_est_CPT(3, [0.2, 0.9])
graph.set_node_est_CPT(4, [0.1, 0.8])
samples = []
for i in range(100):
curr_sample = []
for j in range(5):
curr_sample.append(round(random.random(), 0))
samples.append(curr_sample)
samples = np.array(samples, dtype=np.int64)
#print "RANDOM DATA"
#print str(samples)
ret = graph.EM(samples, 2, 1000)
iters += ret
runs.append(ret)
print "Took approximately: " + str(iters/simulations)
plt.figure()
plt.hist(runs, bins=50)
plt.title('Distribution of Iterations Until Converged')
plt.xlabel('Number of Iterations')
plt.ylabel('Frequency')
plt.savefig('dist_9.png')
print "Took approximately: " + str(iters/simulations)
def setUp(self):
self.new_graph = DirectedGraph()
def EM_run_6b(): #print "\n Experiment run 6: [tt, tf, ft, ff] = [0.9, 0.6, 0.3, 0.2]" #print "RANDOM DATA" iters = 0 simulations = 10000 graph = DirectedGraph(5, [0.5 ,0.5]) graph.draw_edge(0, 2) graph.draw_edge(1, 2) graph.draw_edge(2, 3) graph.draw_edge(2, 4) graph.init_CPT() graph.set_node_est_CPT(0, [0.1]) graph.set_node_est_CPT(1, [0.2]) graph.set_node_est_CPT(2, [0.2, 0.3, 0.6, 0.9]) graph.set_node_est_CPT(3, [0.2, 0.9]) graph.set_node_est_CPT(4, [0.1, 0.8]) samples = [] for i in range(100): curr_sample = [] for j in range(5): curr_sample.append(round(random.random(), 0)) samples.append(curr_sample) samples = np.array(samples, dtype=np.int64) #print "RANDOM DATA" #print str(samples) return graph.EM(samples, 2, 10000)
def __init__(self):
self.dict_of_following = {}
self.list_of_follwoers_names = []
self.dg = DirectedGraph()
class DirectedClassTest(unittest.TestCase):
def setUp(self):
self.new_graph = DirectedGraph()
def test_init(self):
self.assertEqual(self.new_graph.graph, {})
def test_add_edge(self):
self.new_graph.add_edge("Ivan", "Petar")
self.new_graph.add_edge("Petar", "Georgi")
self.assertEqual(self.new_graph.graph, {"Ivan": ["Petar"], "Petar": ["Georgi"], "Georgi": []})
def test_get_neighbours(self):
self.new_graph.add_edge("Ivan", "Petar")
self.new_graph.add_edge("Petar", "Georgi")
self.assertEqual(self.new_graph.get_neighbours_for("Ivan"), ["Petar"])
self.assertEqual(self.new_graph.get_neighbours_for("Petar"), ["Georgi"])
def test_path_between_direct_neighbours(self):
self.new_graph.add_edge("Ivan", "Petar")
self.assertTrue(self.new_graph.path_between("Ivan", "Petar"))
def test_path_between_false(self):
self.new_graph.add_edge("Ivan", "Petar")
self.new_graph.add_edge("Valeri", "Georgi")
self.assertFalse(self.new_graph.path_between("Ivan", "Dragan"))
self.assertFalse(self.new_graph.path_between("Ivan", "Georgi"))
def test_path_between_distant_neighbour(self):
self.new_graph.add_edge("Ivan", "Petar")
self.new_graph.add_edge("Petar", "Georgi")
self.assertTrue(self.new_graph.path_between("Ivan", "Georgi"))
def test_path_between_cycle(self):
self.new_graph.add_edge("Ivan", "Petar")
self.new_graph.add_edge("Petar", "Ivan")
self.assertTrue(self.new_graph.path_between("Petar", "Ivan"))
def test_path_between_cycles(self):
self.new_graph.add_edge("1", "2")
self.new_graph.add_edge("2", "1")
self.new_graph.add_edge("2", "3")
self.new_graph.add_edge("3", "2")
self.new_graph.add_edge("3", "1")
self.new_graph.add_edge("2", "4")
self.new_graph.add_edge("4", "2")
self.new_graph.add_edge("4", "3")
self.new_graph.add_edge("4", "1")
self.new_graph.add_edge("3", "5")
self.assertTrue(self.new_graph.path_between("1", "5"))
def setUp(self):
self.node_one = Node('Penko')
self.node_two = Node('Penka')
self.graph = DirectedGraph()
def test_edge_added_directed(self):
graph = DirectedGraph(7)
graph.add_edge(2, 9)
self.assertEqual(graph.edge, 0)
self.assertEqual(graph.adj_list[2], [])
self.assertNotEqual(len(graph.adj_list), 9)
graph.add_edge(0, 1)
graph.add_edge(0, 5)
graph.add_edge(6, 0)
graph.add_edge(6, 4)
graph.add_edge(2, 3)
self.assertEqual(graph.adj_list[2], [3])
self.assertEqual(graph.adj_list[3], [])
graph.add_edge(3, 2)
self.assertEqual(graph.adj_list[2], [3])
self.assertEqual(graph.adj_list[3], [2])
graph.add_edge(2, 0)
graph.add_edge(3, 5)
graph.add_edge(4, 2)
graph.add_edge(4, 3)
graph.add_edge(5, 4)
self.assertEqual(graph.edge, 11)
class TestDirectedGraph(unittest.TestCase):
def setUp(self):
self.node_one = Node('Penko')
self.node_two = Node('Penka')
self.graph = DirectedGraph()
def test_add_edge(self):
self.graph.add_edge(self.node_one, self.node_two)
self.assertIn(self.node_one, self.graph.nodes[self.node_two.name].is_pointed_by)
self.assertIn(self.node_two, self.graph.nodes[self.node_one.name].points_to)
def test_get_neighbours_for(self):
pencho = Node('Pencho')
self.graph.add_edge(self.node_one, self.node_two)
self.graph.add_edge(self.node_one, pencho)
self.assertEqual([self.node_two, pencho], self.graph.get_neighbours_for(self.node_one))
def test_path_between_normal(self):
self.graph.add_edge(self.node_one, self.node_two)
self.assertTrue(self.graph.path_between(self.node_one, self.node_two))
self.assertFalse(self.graph.path_between(self.node_two, self.node_one))
def test_path_between_rare(self):
penichka = Node('Penichka')
self.graph.add_edge(self.node_one, self.node_two)
self.graph.add_edge(self.node_two, penichka)
self.assertTrue(self.graph.path_between(self.node_one, penichka))
def test_path_between_recursion(self):
uno = Node('1')
dos = Node('2')
tres = Node('3')
quatro = Node('4')
cinco = Node('5')
seis = Node('6')
self.graph.add_edge(uno, dos)
self.graph.add_edge(dos, tres)
self.graph.add_edge(dos, quatro)
self.graph.add_edge(quatro, cinco)
self.graph.add_edge(quatro, seis)
self.graph.add_edge(tres, dos)
self.assertTrue(self.graph.path_between(uno, seis))
class TestGraph(unittest.TestCase):
def setUp(self):
self.graph = DirectedGraph()
self.graph.add_edge("Ivo", "Hrisi")
self.graph.add_edge("Pesho", "Ivo")
self.graph.add_edge("Pesho", 'a')
self.graph.add_edge("Niki", "Georgi")
def test_addEdge(self):
self.assertIn(("Niki", "Georgi"), self.graph.edges)
self.assertIn("Niki", self.graph.nodes)
self.assertIn("Georgi", self.graph.nodes)
def test_get_neighbours(self):
self.assertIn("a", self.graph.get_neighbors_for("Pesho"))
self.assertIn("Ivo", self.graph.get_neighbors_for("Pesho"))
self.assertIn("Hrisi", self.graph.get_neighbors_for('Ivo'))
def test_path_between(self):
self.assertTrue(self.graph.path_between("Ivo", "Hrisi"))
self.assertFalse(self.graph.path_between("Hrisi", "Ivo"))
self.assertTrue(self.graph.path_between("Niki", "Georgi"))
self.assertTrue(self.graph.path_between("Pesho", "Hrisi"))
@unittest.skip("Just testing print")
def test_print(self):
print(self.graph)
self.assertTrue(False)
def setUp(self):
self.graph = DirectedGraph()
self.graph.add_edge("Ivo", "Hrisi")
self.graph.add_edge("Pesho", "Ivo")
self.graph.add_edge("Pesho", 'a')
self.graph.add_edge("Niki", "Georgi")
def test_out_degree_directed(self):
graph = DirectedGraph(7)
graph.add_edge(0, 1)
graph.add_edge(0, 5)
self.assertEqual(graph.out_degree(0), 2)
class DirectedGraphTests(unittest.TestCase):
def setUp(self):
self.graph = DirectedGraph()
self.graph.add_edge("Pesho", "Ivo")
self.graph.add_edge("Ivan", "Ivo")
self.graph.add_edge("Gosho", "Ivo")
self.graph.add_edge("Ivan", "Pesho")
self.graph.add_edge("Ivo", "Ivan")
def test_add_edge(self):
self.assertEqual(len(self.graph.graph), 4)
def test_get_neighbors(self):
self.assertEqual(len(self.graph.graph['Ivan']), 2)
def test_path_between(self):
self.assertTrue(self.graph.path_between("Pesho", "Ivo"))
self.assertTrue(self.graph.path_between("Ivo", "Pesho"))
self.assertFalse(self.graph.path_between("Ivan", "Gosho"))
def test_steps_between(self):
self.assertEqual(self.graph.steps_between("Pesho", "Pesho"), 0)
self.assertEqual(self.graph.steps_between("Ivan", "Pesho"), 1)
self.assertEqual(self.graph.steps_between("Pesho", "Ivan"), 2)
self.assertEqual(self.graph.steps_between("Gosho", "Pesho"), 3)
def test_to_string(self):
test_string = str(self.graph)
self.assertEqual(len(test_string), 71)
def EM_run_3(): print "\n\n!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!" print "Experiment run 3: [tt, tf, ft, ff] = [0.9, 0.9, 0.9, 0.9]" print "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!" graph = DirectedGraph(5, [0.5 ,0.5]) graph.draw_edge(0, 2) graph.draw_edge(1, 2) graph.draw_edge(2, 3) graph.draw_edge(2, 4) graph.init_CPT() graph.set_node_est_CPT(0, [0.1]) graph.set_node_est_CPT(1, [0.2]) graph.set_node_est_CPT(2, [0.9, 0.9, 0.9, 0.9]) graph.set_node_est_CPT(3, [0.2, 0.9]) graph.set_node_est_CPT(4, [0.1, 0.8]) samples = np.array([[0, 0, 0, 0, 0], [0, 0, 0, 1, 0], [1, 0, 0, 1, 1], [0, 0, 0, 0, 1], [0, 1, 0, 1, 0], [0, 0, 0, 0, 1], [1, 1, 0, 1, 1], [0, 0, 0, 0, 0], [0, 0, 0, 1, 0], [0, 0, 0, 0, 1]]) graph.EM(samples, 2, 100)
def test_max_degree_directed(self):
graph = DirectedGraph(7)
graph.add_edge(0, 1)
graph.add_edge(2, 1)
self.assertEqual(graph.max_degree(), 2)