def replacement(self, template, e):
r = dna_type()
base_to_string = str.__str__
for t in template:
tt = type(t)
if tt is Base:
r.append(base_to_string(t))
elif tt is Reference:
if t.n < len(e):
begin, end = e[t.n]
else:
begin, end = 0, 0
if t.level == 0:
r.extend(self.dna[begin:end])
else:
p = protect(self.dna[begin:end], t.level)
self.cost += len(p)
r.extend(p)
elif tt is Length:
if t < len(e):
begin, end = e[t]
else:
begin, end = 0, 0
r.extend(asnat(end - begin))
return r
def genelist_integrity():
gene = genes.printgenetable
push_true = dna.push_to_blue_prefix('P')
integrity_prefix = dna.replace_procedure_prefix(host_gene, gene, push_true)
for page in range(15):
listpage_prefix = genes.gene_table_page_nr.patch_prefix(
dna.asnat(page, length=24))
#genelist_prefix += guide_page_prefix(42)
dna.create_and_run_prefix(listpage_prefix + integrity_prefix + \
host_activation_prefix,
'data/guide/genelist_integrity/{0:02}'.format(page))