def extend_bed_invalid_bp_failing_test():
# chr1 100 200
bed = pybedtools.BedTool('tests/data/test.bed')
result_bed = bed_util.extend_bed(
bed=bed,
bp=[1, 2, 3],
)
def extend_bed_double_element_list_bp_test():
# chr1 100 200
bed = pybedtools.BedTool('tests/data/test.bed')
result_bed = bed_util.extend_bed(
bed=bed,
bp=[10, 20],
)
assert result_bed[0].chrom == 'chr1'
assert result_bed[0].start == 90
assert result_bed[0].end == 220
def extend_bed_up_test():
# chr1 100 200
bed = pybedtools.BedTool('tests/data/test.bed')
result_bed = bed_util.extend_bed(
bed=bed,
bp=10,
direction='up',
)
assert result_bed[0].chrom == 'chr1'
assert result_bed[0].start == 90
assert result_bed[0].end == 200
def extend_bed_clipping_test():
# chr1 100 200
bed = pybedtools.BedTool('tests/data/test.bed')
result_bed = bed_util.extend_bed(
bed=bed,
bp=150,
direction='both',
)
assert result_bed[0].chrom == 'chr1'
assert result_bed[0].start == 0
assert result_bed[0].end == 350