def fn(self, cb):
coverage_by_age = {'min': 0, 'max': 200, 'coverage': self.coverage}
add_ITN(cb,
start=self.start,
coverage_by_ages=[coverage_by_age],
waning=self.waning,
nodeIDs=self.nodeIDs)
def fn(self, cb) :
birth_durations = [self.itn_dates[x] - self.itn_dates[x + 1] for x in range(len(self.itn_dates) - 1)]
# itn_distr = zip(self.itn_dates[:-1], self.itn_fracs)
with open(self.reffname) as fin :
cov = json.loads(fin.read())
for itncov in cov[self.channel] :
if itncov['coverage'] > 0 :
for i, (itn_date, itn_frac) in enumerate(zip(self.itn_dates, self.itn_fracs)):
c = itncov['coverage'] * itn_frac
if i < len(self.itn_fracs) - 1:
c /= np.prod([1 - x * itncov['coverage'] for x in self.itn_fracs[i + 1:]])
add_ITN(cb, itn_date,
coverage_by_ages=[{'min': 0, 'max': 5, 'coverage': min([1, c*1.3])},
{'birth': 1, 'coverage': min([1,c*1.3]), 'duration': max([-1, birth_durations[i]])},
{'min': 5, 'max': 20, 'coverage': c / 2},
{'min': 20, 'max': 100, 'coverage': min([1, c*1.3])}],
waning=self.waning, nodeIDs=itncov['nodes'])