def __init__(self, config):
AppManager.__init__(self, config)
if not hasattr(self, '_mysql'):
db_params = Configuration(config.db_params)
db_params.reuse_connection = True # we use locks
self._mysql = MySQL(db_params)
# make sure applications row with id 0 exists
count = self._mysql.query(
'SELECT COUNT(*) FROM `applications` WHERE `id` = 0')[0]
if count == 0:
# Cannot insert with id = 0 (will be interpreted as next auto_increment id unless server-wide setting is changed)
# Inesrt with an implicit id first and update later
columns = ('auth_level', 'title', 'path', 'status', 'user_id',
'user_host')
values = (AppManager.LV_WRITE, 'wsgi', '', 'done', 0, '')
insert_id = self._mysql.insert_get_id('applications',
columns=columns,
values=values)
self._mysql.query(
'UPDATE `applications` SET `id` = 0 WHERE `id` = %s',
insert_id)
def __init__(self, config):
FileTransferOperation.__init__(self, config)
FileTransferQuery.__init__(self, config)
FileDeletionOperation.__init__(self, config)
FileDeletionQuery.__init__(self, config)
self.db = MySQL(config.db_params)
def __init__(self, config=None):
if config is None:
config = HistoryDatabase._config
self.db = MySQL(config.db_params)
self.set_read_only(config.get('read_only', False))
def __init__(self, config):
TransactionHistoryInterface.__init__(self, config)
self._mysql = MySQL(config.db_params)
self._cache_db = MySQL(config.cache_db_params)
self._site_id_map = {}
self._dataset_id_map = {}
class RLFSMPhEDExReserveCopyInterface(CopyInterface):
"""
CopyInterface using the Dynamo RLFSM.
"""
def __init__(self, config = None):
CopyInterface.__init__(self, config)
self.rlfsm = RLFSM(config.get('rlfsm', None))
self.mysql = MySQL(config.reserve_db_params)
def set_read_only(self, value = True): #override
self._read_only = value
self.rlfsm.set_read_only(value)
def schedule_copies(self, replica_list, operation_id, comments = ''): #override
sites = set(r.site for r in replica_list)
if len(sites) != 1:
raise OperationalError('schedule_copies should be called with a list of replicas at a single site.')
LOG.info('Scheduling copy of %d replicas to %s using RLFSM (operation %d)', len(replica_list), list(sites)[0], operation_id)
result = []
for replica in replica_list:
# Function spec is to return clones (so that if specific block fails to copy, we can return a dataset replica without the block)
clone_replica = DatasetReplica(replica.dataset, replica.site)
clone_replica.copy(replica)
result.append(clone_replica)
for block_replica in replica.block_replicas:
LOG.debug('Subscribing files for %s', str(block_replica))
if block_replica.file_ids is None:
LOG.debug('No file to subscribe for %s', str(block_replica))
return
all_files = block_replica.block.files
missing_files = all_files - block_replica.files()
for lfile in missing_files:
self.rlfsm.subscribe_file(block_replica.site, lfile)
clone_block_replica = BlockReplica(block_replica.block, block_replica.site, block_replica.group)
clone_block_replica.copy(block_replica)
clone_block_replica.last_update = int(time.time())
clone_replica.block_replicas.add(clone_block_replica)
if not self._read_only:
for clone_replica in result:
if clone_replica.growing:
self.mysql.query('INSERT INTO `phedex_transfer_reservations` (`operation_id`, `item`, `site`, `group`) VALUES (%s, %s, %s, %s)', operation_id, clone_replica.dataset.name, clone_replica.site.name, clone_replica.group.name)
else:
for block_replica in clone_replica.block_replicas:
self.mysql.query('INSERT INTO `phedex_transfer_reservations` (`operation_id`, `item`, `site`, `group`) VALUES (%s, %s, %s, %s)', operation_id, block_replica.block.full_name(), clone_replica.site.name, block_replica.group.name)
# no external dependency - everything is a success
return result
def update(config, inventory):
htcondor = HTCondor(config.htcondor.config)
store = MySQL(config.store.db_params)
last_update = store.query(
'SELECT UNIX_TIMESTAMP(`dataset_requests_last_update`) FROM `system`'
)[0]
try:
store.query(
'UPDATE `system` SET `dataset_requests_last_update` = NOW()',
retries=0,
silent=True)
except MySQLdb.OperationalError:
# We have a read-only config
read_only = True
else:
read_only = False
source_records = GlobalQueueRequestHistory._get_source_records(
htcondor, inventory, last_update)
if not read_only:
GlobalQueueRequestHistory._save_records(source_records, store)
# remove old entries
store.query(
'DELETE FROM `dataset_requests` WHERE `queue_time` < DATE_SUB(NOW(), INTERVAL 1 YEAR)'
)
store.query(
'UPDATE `system` SET `dataset_requests_last_update` = NOW()')
def __init__(self, config = None):
if config is None:
if MySQLReplicaLock._default_config is None:
raise ConfigurationError('MySQLReplicaLock default config is not set')
config = MySQLReplicaLock._default_config
self._mysql = MySQL(config.get('db_params', None))
self.users = []
for user_id, role_id in config.get('users', []):
self.users.append((user_id, role_id))
def _create_lock(self, request, user, dn):
service_id = 0
if 'service' in request:
try:
service_id = self.registry.db.query('SELECT `id` FROM `user_services` WHERE `name` = %s', request['service'])[0]
except IndexError:
pass
columns = ('item', 'sites', 'groups', 'lock_date', 'expiration_date', 'user', 'dn', 'service_id', 'comment')
comment = None
if 'comment' in request:
comment = request['comment']
values = [(request['item'], None, None, MySQL.bare('NOW()'), MySQL.bare('FROM_UNIXTIME(%d)' % request['expires']), user, dn, service_id, comment)]
if 'sites' in request:
new_values = []
for site in request['sites']:
for v in values:
new_values.append(v[:1] + (site,) + v[2:])
values = new_values
if 'groups' in request:
new_values = []
for group in request['groups']:
for v in values:
new_values.append(v[:2] + (group,) + v[3:])
values = new_values
new_locks = []
for v in values:
lock_id = self.registry.db.insert_get_id('detox_locks', columns, v)
new_lock = {
'lockid': lock_id,
'user': user,
'dn': dn,
'item': request['item'],
'locked': time.strftime('%Y-%m-%d %H:%M:%S UTC', time.gmtime()),
'expires': time.strftime('%Y-%m-%d %H:%M:%S UTC', time.gmtime(request['expires']))
}
if v[7] != 0:
new_lock['service'] = request['service']
if v[1] is not None:
new_lock['sites'] = v[1]
if v[2] is not None:
new_lock['groups'] = v[2]
if 'comment' in request:
new_lock['comment'] = request['comment']
new_locks.append(new_lock)
return new_locks
def create_request(self, caller, items, sites, sites_original, group,
ncopies):
now = int(time.time())
if self._read_only:
return CopyRequest(0, caller.name, caller.dn, group, ncopies,
'new', now, now, 1)
# Make an entry in registry
columns = ('group', 'num_copies', 'user', 'dn', 'first_request_time',
'last_request_time')
values = (group, ncopies, caller.name, caller.dn,
MySQL.bare('FROM_UNIXTIME(%d)' % now),
MySQL.bare('FROM_UNIXTIME(%d)' % now))
request_id = self.registry.db.insert_get_id('copy_requests', columns,
values)
mapping = lambda site: (request_id, site)
self.registry.db.insert_many('copy_request_sites',
('request_id', 'site'), mapping, sites)
mapping = lambda item: (request_id, item)
self.registry.db.insert_many('copy_request_items',
('request_id', 'item'), mapping, items)
# Make an entry in history
history_user_ids = self.history.save_users([(caller.name, caller.dn)],
get_ids=True)
history_site_ids = self.history.save_sites(sites_original,
get_ids=True)
history_group_ids = self.history.save_groups([group], get_ids=True)
history_dataset_ids, history_block_ids = self._save_items(items)
sql = 'INSERT INTO `copy_requests` (`id`, `group_id`, `num_copies`, `user_id`, `request_time`)'
sql += ' VALUES (%s, %s, %s, %s, FROM_UNIXTIME(%s))'
self.history.db.query(sql, request_id, history_group_ids[0], ncopies,
history_user_ids[0], now)
mapping = lambda sid: (request_id, sid)
self.history.db.insert_many('copy_request_sites',
('request_id', 'site_id'), mapping,
history_site_ids)
mapping = lambda did: (request_id, did)
self.history.db.insert_many('copy_request_datasets',
('request_id', 'dataset_id'), mapping,
history_dataset_ids)
mapping = lambda bid: (request_id, bid)
self.history.db.insert_many('copy_request_blocks',
('request_id', 'block_id'), mapping,
history_block_ids)
return self.get_requests(request_id=request_id)[request_id]
def _do_get_next_application(self, read_only, blocked_apps): #override
sql = 'SELECT `applications`.`id`, 0+`auth_level`, `title`, `path`, `args`, `timeout`, `users`.`name`, `user_host` FROM `applications`'
sql += ' INNER JOIN `users` ON `users`.`id` = `applications`.`user_id`'
sql += ' WHERE `status` = \'new\''
if read_only:
sql += ' AND `auth_level` != \'write\''
if len(blocked_apps) != 0:
sql += ' AND `title` NOT IN %s' % MySQL.stringify_sequence(
blocked_apps)
sql += ' ORDER BY `applications`.`id` LIMIT 1'
result = self._mysql.query(sql)
if len(result) == 0:
return None
else:
appid, auth_level, title, path, args, timeout, uname, uhost = result[
0]
return {
'appid': appid,
'auth_level': auth_level,
'user_name': uname,
'user_host': uhost,
'title': title,
'path': path,
'args': args,
'timeout': timeout
}
def __init__(self, config):
FileTransferOperation.__init__(self, config)
FileTransferQuery.__init__(self, config)
FileDeletionOperation.__init__(self, config)
FileDeletionQuery.__init__(self, config)
self.db = MySQL(config.db_params)
def __init__(self, config):
UpdateBoard.__init__(self, config)
db_params = Configuration(config.db_params)
db_params.reuse_connection = True # we use locks
self._mysql = MySQL(db_params)
def new_cycle(self, partition, policy_text, comment='', test=False):
"""
Set up a new deletion cycle for the partition.
@param partition Partition name string
@param policy_text Full text of the policy
@param comment Comment string
@param test If True, create a deletion_test cycle.
@return cycle number.
"""
if self._read_only:
return 0
part_id = self.save_partitions([partition], get_ids=True)[0]
policy_id = self.save_policy(policy_text)
if test:
operation_str = 'deletion_test'
else:
operation_str = 'deletion'
columns = ('operation', 'partition_id', 'policy_id', 'comment',
'time_start')
values = (operation_str, part_id, policy_id, comment,
MySQL.bare('NOW()'))
return self.db.insert_get_id('deletion_cycles',
columns=columns,
values=values)
def create_request(self, caller, items, sites):
now = int(time.time())
if self._read_only:
return DeletionRequest(0, caller.name, caller.dn, 'new', now, None)
# Make an entry in registry
columns = ('user', 'dn', 'request_time')
values = (caller.name, caller.dn, MySQL.bare('FROM_UNIXTIME(%d)' % now))
request_id = self.registry.db.insert_get_id('deletion_requests', columns, values)
mapping = lambda site: (request_id, site)
self.registry.db.insert_many('deletion_request_sites', ('request_id', 'site'), mapping, sites)
mapping = lambda item: (request_id, item)
self.registry.db.insert_many('deletion_request_items', ('request_id', 'item'), mapping, items)
# Make an entry in history
history_user_ids = self.history.save_users([(caller.name, caller.dn)], get_ids = True)
history_site_ids = self.history.save_sites(sites, get_ids = True)
history_dataset_ids, history_block_ids = self._save_items(items)
sql = 'INSERT INTO `deletion_requests` (`id`, `user_id`, `request_time`)'
sql += ' SELECT %s, u.`id`, FROM_UNIXTIME(%s) FROM `groups` AS g, `users` AS u'
sql += ' WHERE u.`dn` = %s'
self.history.db.query(sql, request_id, now, caller.dn)
mapping = lambda sid: (request_id, sid)
self.history.db.insert_many('deletion_request_sites', ('request_id', 'site_id'), mapping, history_site_ids)
mapping = lambda did: (request_id, did)
self.history.db.insert_many('deletion_request_datasets', ('request_id', 'dataset_id'), mapping, history_dataset_ids)
mapping = lambda bid: (request_id, bid)
self.history.db.insert_many('deletion_request_blocks', ('request_id', 'block_id'), mapping, history_block_ids)
return self.get_requests(request_id = request_id)[request_id]
def new_cycle(self, partition, policy_text, comment = '', test = False):
"""
Set up a new deletion cycle for the partition.
@param partition Partition name string
@param policy_text Full text of the policy
@param comment Comment string
@param test If True, create a deletion_test cycle.
@return cycle number.
"""
if self._read_only:
return 0
part_id = self.save_partitions([partition], get_ids = True)[0]
policy_id = self.save_policy(policy_text)
if test:
operation_str = 'deletion_test'
else:
operation_str = 'deletion'
columns = ('operation', 'partition_id', 'policy_id', 'comment', 'time_start')
values = (operation_str, part_id, policy_id, comment, MySQL.bare('NOW()'))
return self.db.insert_get_id('deletion_cycles', columns = columns, values = values)
def create_request(self, caller, items, sites, sites_original, group, ncopies):
now = int(time.time())
if self._read_only:
return CopyRequest(0, caller.name, caller.dn, group, ncopies, 'new', now, now, 1)
# Make an entry in registry
columns = ('group', 'num_copies', 'user', 'dn', 'first_request_time', 'last_request_time')
values = (group, ncopies, caller.name, caller.dn, MySQL.bare('FROM_UNIXTIME(%d)' % now), MySQL.bare('FROM_UNIXTIME(%d)' % now))
request_id = self.registry.db.insert_get_id('copy_requests', columns, values)
mapping = lambda site: (request_id, site)
self.registry.db.insert_many('copy_request_sites', ('request_id', 'site'), mapping, sites)
mapping = lambda item: (request_id, item)
self.registry.db.insert_many('copy_request_items', ('request_id', 'item'), mapping, items)
# Make an entry in history
history_user_ids = self.history.save_users([(caller.name, caller.dn)], get_ids = True)
history_site_ids = self.history.save_sites(sites_original, get_ids = True)
history_group_ids = self.history.save_groups([group], get_ids = True)
history_dataset_ids, history_block_ids = self._save_items(items)
sql = 'INSERT INTO `copy_requests` (`id`, `group_id`, `num_copies`, `user_id`, `request_time`)'
sql += ' VALUES (%s, %s, %s, %s, FROM_UNIXTIME(%s))'
self.history.db.query(sql, request_id, history_group_ids[0], ncopies, history_user_ids[0], now)
mapping = lambda sid: (request_id, sid)
self.history.db.insert_many('copy_request_sites', ('request_id', 'site_id'), mapping, history_site_ids)
mapping = lambda did: (request_id, did)
self.history.db.insert_many('copy_request_datasets', ('request_id', 'dataset_id'), mapping, history_dataset_ids)
mapping = lambda bid: (request_id, bid)
self.history.db.insert_many('copy_request_blocks', ('request_id', 'block_id'), mapping, history_block_ids)
return self.get_requests(request_id = request_id)[request_id]
def __init__(self, config = None):
if config is None:
config = HistoryDatabase._config
self.db = MySQL(config.db_params)
self.set_read_only(config.get('read_only', False))
def __init__(self, config):
FileTransferOperation.__init__(self, config)
FileTransferQuery.__init__(self, config)
FileDeletionOperation.__init__(self, config)
FileDeletionQuery.__init__(self, config)
self.server_url = config.fts_server
self.server_id = 0 # server id in the DB
# Parameter "retry" for fts3.new_job. 0 = server default
self.fts_retry = config.get('fts_retry', 0)
# String passed to fts3.new_*_job(metadata = _)
self.metadata_string = config.get('metadata_string', 'Dynamo')
# Proxy to be forwarded to FTS
self.x509proxy = config.get('x509proxy', None)
self.x509proxy_orig = config.get('x509proxy', None)
# Bookkeeping device
self.db = MySQL(config.db_params)
# Reuse the context object
self.keep_context = config.get('keep_context', False)
self._context = None
def new_cycle(self, partition, comment='', test=False):
"""
Set up a new copy cycle for the partition.
@param partition partition name string
@param comment comment string
@param test if True, create a copy_test cycle.
@return cycle number.
"""
if self._read_only:
return 0
part_id = self.save_partitions([partition], get_ids=True)[0]
if test:
operation_str = 'copy_test'
else:
operation_str = 'copy'
columns = ('operation', 'partition_id', 'comment', 'time_start')
values = (operation_str, part_id, comment, MySQL.bare('NOW()'))
return self.db.insert_get_id('copy_cycles',
columns=columns,
values=values)
def __init__(self, config):
Authorizer.__init__(self, config)
if not hasattr(self, '_mysql'):
db_params = Configuration(config.db_params)
db_params.reuse_connection = True # we use locks
self._mysql = MySQL(db_params)
def _make_history_constraints(self, request_id, statuses, users, items,
sites):
if users is not None:
history_user_ids = self.history.db.select_many(
'users', 'id', 'name', users)
else:
history_user_ids = None
if items is not None:
history_dataset_ids, history_block_ids = self._get_saved_item_ids(
items)
else:
history_dataset_ids = None
history_block_ids = None
if sites is not None:
history_site_ids = self.history.db.select_many(
'sites', 'id', 'name', sites)
else:
history_site_ids = None
constraints = []
if request_id is not None:
constraints.append('r.`id` = %d' % request_id)
if statuses is not None:
constraints.append('r.`status` IN ' +
MySQL.stringify_sequence(statuses))
if users is not None:
constraints.append('r.`user_id` IN ' +
MySQL.stringify_sequence(history_user_ids))
if items is not None or sites is not None:
temp_table = self._make_temp_history_tables(
history_dataset_ids, history_block_ids, history_site_ids)
constraints.append(
'r.`id` IN (SELECT `id` FROM {0})'.format(temp_table))
if len(constraints) != 0:
return ' WHERE ' + ' AND '.join(constraints)
else:
return ''
def _make_registry_constraints(self, request_id, statuses, users, items, sites):
constraints = []
if request_id is not None:
constraints.append('r.`id` = %d' % request_id)
if statuses is not None:
constraints.append('r.`status` IN ' + MySQL.stringify_sequence(statuses))
if users is not None:
constraints.append('r.`user` IN ' + MySQL.stringify_sequence(users))
if items is not None or sites is not None:
temp_table = self._make_temp_registry_tables(items, sites)
constraints.append('r.`id` IN (SELECT `id` FROM {0})'.format(temp_table))
if len(constraints) != 0:
return ' WHERE ' + ' AND '.join(constraints)
else:
return ''
def make_entry(self, site_name):
if self._read_only:
operation_id = 0
else:
site_id = self.save_sites([site_name], get_ids=True)[0]
operation_id = self.db.insert_get_id('copy_operations',
columns=('timestamp',
'site_id'),
values=(MySQL.bare('NOW()'),
site_id))
return HistoryRecord(HistoryRecord.OP_COPY, operation_id, site_name,
int(time.time()))
def _connect(self): #override
if self._host == 'localhost' or self._host == socket.gethostname():
# This is the master server; wipe the table clean
self._mysql.query('DELETE FROM `servers`')
self._mysql.query('ALTER TABLE `servers` AUTO_INCREMENT = 1')
else:
self._mysql.query('DELETE FROM `servers` WHERE `hostname` = %s',
socket.gethostname())
# id of this server
self._server_id = self._mysql.insert_get_id(
'servers',
columns=('hostname', 'last_heartbeat'),
values=(socket.gethostname(), MySQL.bare('NOW()')))
def __init__(self, config):
FileTransferOperation.__init__(self, config)
FileTransferQuery.__init__(self, config)
FileDeletionOperation.__init__(self, config)
FileDeletionQuery.__init__(self, config)
self.server_url = config.fts_server
self.server_id = 0 # server id in the DB
# Parameter "retry" for fts3.new_job. 0 = server default
self.fts_retry = config.get('fts_retry', 0)
# String passed to fts3.new_*_job(metadata = _)
self.metadata_string = config.get('metadata_string', 'Dynamo')
# Proxy to be forwarded to FTS
self.x509proxy = config.get('x509proxy', None)
# Bookkeeping device
self.db = MySQL(config.db_params)
# Reuse the context object
self.keep_context = config.get('keep_context', True)
self._context = None
def _make_registry_constraints(self, request_id, statuses, users, items,
sites):
constraints = []
if request_id is not None:
constraints.append('r.`id` = %d' % request_id)
if statuses is not None:
constraints.append('r.`status` IN ' +
MySQL.stringify_sequence(statuses))
if users is not None:
constraints.append('r.`user` IN ' +
MySQL.stringify_sequence(users))
if items is not None or sites is not None:
temp_table = self._make_temp_registry_tables(items, sites)
constraints.append(
'r.`id` IN (SELECT `id` FROM {0})'.format(temp_table))
if len(constraints) != 0:
return ' WHERE ' + ' AND '.join(constraints)
else:
return ''
def create_cached_request(self, caller, item, sites_original, group, ncopies):
now = int(time.time())
# Make an entry in registry
columns = ('item', 'sites', 'group', 'num_copies', 'user', 'dn', 'request_time', 'status')
values = (item, sites_original, group, ncopies, caller.name, caller.dn, MySQL.bare('FROM_UNIXTIME(%d)' % now), 'new')
LOG.info(values)
cached_request_id = self.registry.db.insert_get_id('cached_copy_requests', columns, values)
return_dict = {}
return_dict['request_id'] = cached_request_id
return_dict['item'] = item
return_dict['sites'] = sites_original
return return_dict
def _make_history_constraints(self, request_id, statuses, users, items, sites):
if users is not None:
history_user_ids = self.history.db.select_many('users', 'id', 'name', users)
else:
history_user_ids = None
if items is not None:
history_dataset_ids, history_block_ids = self._get_saved_item_ids(items)
else:
history_dataset_ids = None
history_block_ids = None
if sites is not None:
history_site_ids = self.history.db.select_many('sites', 'id', 'name', sites)
else:
history_site_ids = None
constraints = []
if request_id is not None:
constraints.append('r.`id` = %d' % request_id)
if statuses is not None:
constraints.append('r.`status` IN ' + MySQL.stringify_sequence(statuses))
if users is not None:
constraints.append('r.`user_id` IN ' + MySQL.stringify_sequence(history_user_ids))
if items is not None or sites is not None:
temp_table = self._make_temp_history_tables(history_dataset_ids, history_block_ids, history_site_ids)
constraints.append('r.`id` IN (SELECT `id` FROM {0})'.format(temp_table))
if len(constraints) != 0:
return ' WHERE ' + ' AND '.join(constraints)
else:
return ''
def _cancel(self, task_ids, optype):
sql = 'SELECT b.`job_id`, f.`fts_file_id` FROM `fts_{op}_tasks` AS f'
sql += ' INNER JOIN `fts_{op}_batches` AS b ON b.`id` = f.`fts_batch_id`'
result = self.db.execute_many(sql.format(op = optype), MySQL.bare('f.`id`'), task_ids)
by_job = collections.defaultdict(list)
for job_id, file_id in result:
by_job[job_id].append(file_id)
if not self._read_only:
for job_id, ids in by_job.iteritems():
try:
self._ftscall('cancel', job_id, file_ids = ids)
except:
LOG.error('Failed to cancel FTS job %s', job_id)
def save_policy(self, policy_text):
md5 = hashlib.md5(policy_text).hexdigest()
result = self.db.query(
'SELECT `id`, `text` FROM `deletion_policies` WHERE `hash` = UNHEX(%s)',
md5)
for policy_id, text in result:
if text == policy_text:
return policy_id
# no row with matching hash or no row with matching text although hash matches (basically impossible)
# new policy
columns = ('hash', 'text')
return self.db.insert_get_id('deletion_policies',
columns=columns,
values=(MySQL.bare('UNHEX(\'%s\')' % md5),
policy_text))
def _cancel(self, task_ids, optype):
sql = 'SELECT b.`job_id`, f.`fts_file_id` FROM `fts_{op}_tasks` AS f'
sql += ' INNER JOIN `fts_{op}_batches` AS b ON b.`id` = f.`fts_batch_id`'
result = self.db.execute_many(sql.format(op=optype),
MySQL.bare('f.`id`'), task_ids)
by_job = collections.defaultdict(list)
for job_id, file_id in result:
by_job[job_id].append(file_id)
if not self._read_only:
for job_id, ids in by_job.iteritems():
try:
self._ftscall('cancel', job_id, file_ids=ids)
except:
LOG.error('Failed to cancel FTS job %s', job_id)
def create_request(self, caller, items, sites):
now = int(time.time())
if self._read_only:
return DeletionRequest(0, caller.name, caller.dn, 'new', now, None)
# Make an entry in registry
columns = ('user', 'dn', 'request_time')
values = (caller.name, caller.dn,
MySQL.bare('FROM_UNIXTIME(%d)' % now))
request_id = self.registry.db.insert_get_id('deletion_requests',
columns, values)
mapping = lambda site: (request_id, site)
self.registry.db.insert_many('deletion_request_sites',
('request_id', 'site'), mapping, sites)
mapping = lambda item: (request_id, item)
self.registry.db.insert_many('deletion_request_items',
('request_id', 'item'), mapping, items)
# Make an entry in history
history_user_ids = self.history.save_users([(caller.name, caller.dn)],
get_ids=True)
history_site_ids = self.history.save_sites(sites, get_ids=True)
history_dataset_ids, history_block_ids = self._save_items(items)
sql = 'INSERT INTO `deletion_requests` (`id`, `user_id`, `request_time`)'
sql += ' SELECT %s, u.`id`, FROM_UNIXTIME(%s) FROM `groups` AS g, `users` AS u'
sql += ' WHERE u.`dn` = %s'
self.history.db.query(sql, request_id, now, caller.dn)
mapping = lambda sid: (request_id, sid)
self.history.db.insert_many('deletion_request_sites',
('request_id', 'site_id'), mapping,
history_site_ids)
mapping = lambda did: (request_id, did)
self.history.db.insert_many('deletion_request_datasets',
('request_id', 'dataset_id'), mapping,
history_dataset_ids)
mapping = lambda bid: (request_id, bid)
self.history.db.insert_many('deletion_request_blocks',
('request_id', 'block_id'), mapping,
history_block_ids)
return self.get_requests(request_id=request_id)[request_id]
def update(config, inventory):
popdb = PopDB(config.popdb.config)
store = MySQL(config.store.db_params)
last_update = store.query(
'SELECT UNIX_TIMESTAMP(`dataset_accesses_last_update`) FROM `system`'
)[0]
try:
store.query(
'UPDATE `system` SET `dataset_accesses_last_update` = NOW()',
retries=0,
silent=True)
except MySQLdb.OperationalError:
# We have a read-only config
read_only = True
LOG.info('Running update() in read-only mode.')
else:
read_only = False
start_time = max(last_update,
(time.time() - 3600 * 24 * config.max_back_query))
start_date = datetime.date(*time.gmtime(start_time)[:3])
included_sites = list(config.included_sites)
excluded_sites = list(config.excluded_sites)
source_records = CRABAccessHistory._get_source_records(
popdb, inventory, included_sites, excluded_sites, start_date)
if not read_only:
CRABAccessHistory._save_records(source_records, store)
# remove old entries
store.query(
'DELETE FROM `dataset_accesses` WHERE `date` < DATE_SUB(NOW(), INTERVAL 2 YEAR)'
)
store.query(
'UPDATE `system` SET `dataset_accesses_last_update` = NOW()')
def new_cycle(self, partition, comment = '', test = False):
"""
Set up a new copy cycle for the partition.
@param partition partition name string
@param comment comment string
@param test if True, create a copy_test cycle.
@return cycle number.
"""
if self._read_only:
return 0
part_id = self.save_partitions([partition], get_ids = True)[0]
if test:
operation_str = 'copy_test'
else:
operation_str = 'copy'
columns = ('operation', 'partition_id', 'comment', 'time_start')
values = (operation_str, part_id, comment, MySQL.bare('NOW()'))
return self.db.insert_get_id('copy_cycles', columns = columns, values = values)
class MySQLUpdateBoard(UpdateBoard):
def __init__(self, config):
UpdateBoard.__init__(self, config)
db_params = Configuration(config.db_params)
db_params.reuse_connection = True # we use locks
self._mysql = MySQL(db_params)
def lock(self): #override
self._mysql.lock_tables(write = ['inventory_updates'])
def unlock(self): #override
self._mysql.unlock_tables()
def get_updates(self): #override
for cmd, obj in self._mysql.xquery('SELECT `cmd`, `obj` FROM `inventory_updates` ORDER BY `id`'):
if cmd == 'update':
yield DynamoInventory.CMD_UPDATE, obj
elif cmd == 'delete':
yield DynamoInventory.CMD_DELETE, obj
def flush(self): #override
self._mysql.query('DELETE FROM `inventory_updates`')
self._mysql.query('ALTER TABLE `inventory_updates` AUTO_INCREMENT = 1')
def write_updates(self, update_commands): #override
self._mysql.lock_tables(write = ['inventory_updates'])
try:
sql = 'INSERT INTO `inventory_updates` (`cmd`, `obj`) VALUES (%s, %s)'
for cmd, sobj in update_commands:
if cmd == DynamoInventory.CMD_UPDATE:
self._mysql.query(sql, 'update', sobj)
elif cmd == DynamoInventory.CMD_DELETE:
self._mysql.query(sql, 'delete', sobj)
finally:
self._mysql.unlock_tables()
def disconnect(self):
self._mysql.close()
class StandaloneFileOperation(FileTransferOperation, FileTransferQuery, FileDeletionOperation, FileDeletionQuery):
"""
Interface to in-house transfer & deletion daemon using MySQL for bookkeeping.
"""
def __init__(self, config):
FileTransferOperation.__init__(self, config)
FileTransferQuery.__init__(self, config)
FileDeletionOperation.__init__(self, config)
FileDeletionQuery.__init__(self, config)
self.db = MySQL(config.db_params)
def num_pending_transfers(self): #override
# FOD can throttle itself.
return 0
def num_pending_deletions(self): #override
# FOD can throttle itself.
return 0
def form_batches(self, tasks): #override
if len(tasks) == 0:
return []
if hasattr(tasks[0], 'source'):
# These are transfer tasks
by_endpoints = collections.defaultdict(list)
for task in tasks:
endpoints = (task.source, task.subscription.destination)
by_endpoints[endpoints].append(task)
return by_endpoints.values()
else:
by_endpoint = collections.defaultdict(list)
for task in tasks:
by_endpoint[task.desubscription.site].append(task)
return by_endpoint.values()
def start_transfers(self, batch_id, batch_tasks): #override
if len(batch_tasks) == 0:
return {}
result = {}
# tasks should all have the same source and destination
source = batch_tasks[0].source
destination = batch_tasks[0].subscription.destination
fields = ('id', 'source', 'destination', 'checksum_algo', 'checksum')
def yield_task_entry():
for task in batch_tasks:
lfile = task.subscription.file
lfn = lfile.lfn
source_pfn = source.to_pfn(lfn, 'gfal2')
dest_pfn = destination.to_pfn(lfn, 'gfal2')
if source_pfn is None or dest_pfn is None:
# either gfal2 is not supported or lfn could not be mapped
result[task] = False
continue
if self.checksum_algorithm:
checksum = (self.checksum_algorithm, str(lfile.checksum[self.checksum_index]))
else:
checksum = (None, None)
result[task] = True
yield (task.id, source_pfn, dest_pfn) + checksum
if not self._read_only:
sql = 'INSERT INTO `standalone_transfer_batches` (`batch_id`, `source_site`, `destination_site`) VALUES (%s, %s, %s)'
self.db.query(sql, batch_id, source.name, destination.name)
self.db.insert_many('standalone_transfer_tasks', fields, None, yield_task_entry())
LOG.debug('Inserted %d entries to standalone_transfer_tasks for batch %d.', len(batch_tasks), batch_id)
return result
def start_deletions(self, batch_id, batch_tasks): #override
if len(batch_tasks) == 0:
return {}
result = {}
# tasks should all have the same target site
site = batch_tasks[0].desubscription.site
fields = ('id', 'file')
def yield_task_entry():
for task in batch_tasks:
lfn = task.desubscription.file.lfn
pfn = site.to_pfn(lfn, 'gfal2')
if pfn is None:
# either gfal2 is not supported or lfn could not be mapped
result[task] = False
continue
result[task] = True
yield (task.id, pfn)
if not self._read_only:
sql = 'INSERT INTO `standalone_deletion_batches` (`batch_id`, `site`) VALUES (%s, %s)'
self.db.query(sql, batch_id, site.name)
self.db.insert_many('standalone_deletion_tasks', fields, None, yield_task_entry())
LOG.debug('Inserted %d entries to standalone_deletion_tasks for batch %d.', len(batch_tasks), batch_id)
return result
def cancel_transfers(self, task_ids): #override
return self._cancel(task_ids, 'transfer')
def cancel_deletions(self, task_ids): #override
return self._cancel(task_ids, 'deletion')
def cleanup(self): #override
sql = 'DELETE FROM f USING `standalone_transfer_tasks` AS f LEFT JOIN `transfer_tasks` AS t ON t.`id` = f.`id` WHERE t.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `standalone_deletion_tasks` AS f LEFT JOIN `deletion_tasks` AS t ON t.`id` = f.`id` WHERE t.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `standalone_transfer_batches` AS f LEFT JOIN `transfer_batches` AS t ON t.`id` = f.`batch_id` WHERE t.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `standalone_deletion_batches` AS f LEFT JOIN `deletion_batches` AS t ON t.`id` = f.`batch_id` WHERE t.`id` IS NULL'
self.db.query(sql)
# Delete the source tasks - caution: wipes out all tasks when switching the operation backend
sql = 'DELETE FROM t USING `transfer_tasks` AS t'
sql += ' LEFT JOIN `standalone_transfer_tasks` AS f ON f.`id` = t.`id`'
sql += ' WHERE f.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM t USING `deletion_tasks` AS t'
sql += ' LEFT JOIN `standalone_deletion_tasks` AS f ON f.`id` = t.`id`'
sql += ' WHERE f.`id` IS NULL'
self.db.query(sql)
def get_transfer_status(self, batch_id): #override
return self._get_status(batch_id, 'transfer')
def get_deletion_status(self, batch_id): #override
return self._get_status(batch_id, 'deletion')
def write_transfer_history(self, history_db, task_id, history_id): #override
pass
def write_deletion_history(self, history_db, task_id, history_id): #override
pass
def forget_transfer_status(self, task_id): #override
return self._forget_status(task_id, 'transfer')
def forget_deletion_status(self, task_id): #override
return self._forget_status(task_id, 'deletion')
def forget_transfer_batch(self, batch_id): #override
return self._forget_batch(batch_id, 'transfer')
def forget_deletion_batch(self, batch_id): #override
return self._forget_batch(batch_id, 'deletion')
def _cancel(self, task_ids, optype):
sql = 'UPDATE `standalone_{op}_tasks` SET `status` = \'cancelled\''.format(op = optype)
self.db.execute_many(sql, 'id', task_ids, ['`status` IN (\'new\', \'queued\')'])
def _get_status(self, batch_id, optype):
sql = 'SELECT q.`id`, a.`status`, a.`exitcode`, a.`message`, UNIX_TIMESTAMP(a.`start_time`), UNIX_TIMESTAMP(a.`finish_time`) FROM `standalone_{op}_tasks` AS a'
sql += ' INNER JOIN `{op}_tasks` AS q ON q.`id` = a.`id`'
sql += ' WHERE q.`batch_id` = %s'
sql = sql.format(op = optype)
return [(i, FileQuery.status_val(s), c, m, t, f) for (i, s, c, m, t, f) in self.db.xquery(sql, batch_id)]
def _forget_status(self, task_id, optype):
if self._read_only:
return
sql = 'DELETE FROM `standalone_{op}_tasks` WHERE `id` = %s'.format(op = optype)
self.db.query(sql, task_id)
def _forget_batch(self, batch_id, optype):
if self._read_only:
return
sql = 'DELETE FROM `standalone_{op}_batches` WHERE `batch_id` = %s'
self.db.query(sql.format(op = optype), batch_id)
class FTSFileOperation(FileTransferOperation, FileTransferQuery,
FileDeletionOperation, FileDeletionQuery):
def __init__(self, config):
FileTransferOperation.__init__(self, config)
FileTransferQuery.__init__(self, config)
FileDeletionOperation.__init__(self, config)
FileDeletionQuery.__init__(self, config)
self.server_url = config.fts_server
self.server_id = 0 # server id in the DB
# Parameter "retry" for fts3.new_job. 0 = server default
self.fts_retry = config.get('fts_retry', 0)
# String passed to fts3.new_*_job(metadata = _)
self.metadata_string = config.get('metadata_string', 'Dynamo')
# Proxy to be forwarded to FTS
self.x509proxy = config.get('x509proxy', None)
# Bookkeeping device
self.db = MySQL(config.db_params)
# Reuse the context object
self.keep_context = config.get('keep_context', True)
self._context = None
def num_pending_transfers(self): #override
# Check the number of files in queue
# We first thought about counting files with /files, but FTS seems to return only 1000 maximum even when "limit" is set much larger
#files = self._ftscallurl('/files?state_in=ACTIVE,SUBMITTED,READY&limit=%d' % self.max_pending_transfers)
#return len(files)
num_pending = 0
file_states = ['SUBMITTED', 'READY', 'ACTIVE', 'STAGING', 'STARTED']
jobs = self._ftscall('list_jobs',
state_in=['SUBMITTED', 'ACTIVE', 'STAGING'])
for job in jobs:
job_info = self._ftscall('get_job_status',
job['job_id'],
list_files=True)
for file_info in job_info['files']:
if file_info['file_state'] in file_states:
num_pending += 1
if num_pending == self.max_pending_transfers + 1:
# don't need to query more
return num_pending
return num_pending
def num_pending_deletions(self): #override
# See above
#files = self._ftscallurl('/files?state_in=ACTIVE,SUBMITTED,READY&limit=%d' % self.max_pending_deletions)
#return len(files)
num_pending = 0
file_states = ['SUBMITTED', 'READY', 'ACTIVE']
jobs = self._ftscall('list_jobs', state_in=['SUBMITTED', 'ACTIVE'])
for job in jobs:
job_info = self._ftscall('get_job_status',
job['job_id'],
list_files=True)
for file_info in job_info['dm']:
if file_info['file_state'] in file_states:
num_pending += 1
if num_pending == self.max_pending_deletions + 1:
# don't need to query more
return num_pending
return num_pending
def form_batches(self, tasks): #override
if len(tasks) == 0:
return []
# FTS3 has no restriction on how to group the transfers, but cannot apparently take thousands
# of tasks at once
batches = [[]]
for task in tasks:
batches[-1].append(task)
if len(batches[-1]) == self.batch_size:
batches.append([])
return batches
def start_transfers(self, batch_id, batch_tasks): #override
result = {}
stage_files = []
transfers = []
s_pfn_to_task = {}
t_pfn_to_task = {}
for task in batch_tasks:
sub = task.subscription
lfn = sub.file.lfn
dest_pfn = sub.destination.to_pfn(lfn, 'gfal2')
source_pfn = task.source.to_pfn(lfn, 'gfal2')
if dest_pfn is None or source_pfn is None:
# either gfal2 is not supported or lfn could not be mapped
LOG.warning('Could not obtain PFN for %s at %s or %s', lfn,
sub.destination.name, task.source.name)
result[task] = False
continue
if self.checksum_algorithm:
checksum = '%s:%s' % (
self.checksum_algorithm,
str(sub.file.checksum[self.checksum_index]))
verify_checksum = 'target'
else:
checksum = None
verify_checksum = False
if task.source.storage_type == Site.TYPE_MSS:
LOG.debug('Staging %s at %s', lfn, task.source.name)
# need to stage first
stage_files.append(
(source_pfn, dest_pfn, checksum, sub.file.size))
# task identified by the source PFN
s_pfn_to_task[source_pfn] = task
else:
LOG.debug('Submitting transfer of %s from %s to %s to FTS',
lfn, task.source.name, sub.destination.name)
transfers.append(
fts3.new_transfer(source_pfn,
dest_pfn,
checksum=checksum,
filesize=sub.file.size))
# there should be only one task per destination pfn
t_pfn_to_task[dest_pfn] = task
if len(stage_files) != 0:
LOG.debug('Submit new staging job for %d files', len(stage_files))
job = fts3.new_staging_job([ff[0] for ff in stage_files],
bring_online=36000,
metadata=self.metadata_string)
success = self._submit_job(
job, 'staging', batch_id,
dict(
(pfn, task.id) for pfn, task in s_pfn_to_task.iteritems()))
for source_pfn, _, _, _ in stage_files:
result[s_pfn_to_task[source_pfn]] = success
if success and not self._read_only:
LOG.debug('Recording staging queue')
fields = ('id', 'source', 'destination', 'checksum', 'size')
mapping = lambda ff: (s_pfn_to_task[ff[0]].id, ) + ff
if not self._read_only:
self.db.insert_many('fts_staging_queue', fields, mapping,
stage_files)
if len(transfers) != 0:
LOG.debug('Submit new transfer job for %d files', len(transfers))
job = fts3.new_job(transfers,
retry=self.fts_retry,
overwrite=True,
verify_checksum=verify_checksum,
metadata=self.metadata_string)
success = self._submit_job(
job, 'transfer', batch_id,
dict(
(pfn, task.id) for pfn, task in t_pfn_to_task.iteritems()))
for transfer in transfers:
dest_pfn = transfer['destinations'][0]
result[t_pfn_to_task[dest_pfn]] = success
return result
def start_deletions(self, batch_id, batch_tasks): #override
result = {}
pfn_to_task = {}
for task in batch_tasks:
desub = task.desubscription
lfn = desub.file.lfn
pfn = desub.site.to_pfn(lfn, 'gfal2')
if pfn is None:
# either gfal2 is not supported or lfn could not be mapped
result[task] = False
continue
# there should be only one task per destination pfn
pfn_to_task[pfn] = task
job = fts3.new_delete_job(pfn_to_task.keys(),
metadata=self.metadata_string)
success = self._submit_job(
job, 'deletion', batch_id,
dict((pfn, task.id) for pfn, task in pfn_to_task.iteritems()))
for task in pfn_to_task.itervalues():
result[task] = success
return result
def cancel_transfers(self, task_ids): #override
return self._cancel(task_ids, 'transfer')
def cancel_deletions(self, task_ids): #override
return self._cancel(task_ids, 'deletion')
def cleanup(self): #override
sql = 'DELETE FROM f USING `fts_transfer_tasks` AS f'
sql += ' LEFT JOIN `transfer_tasks` AS t ON t.`id` = f.`id`'
sql += ' LEFT JOIN `fts_transfer_batches` AS b ON b.`id` = f.`fts_batch_id`'
sql += ' WHERE t.`id` IS NULL OR b.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `fts_staging_queue` AS f'
sql += ' LEFT JOIN `fts_transfer_tasks` AS t ON t.`id` = f.`id`'
sql += ' WHERE t.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `fts_deletion_tasks` AS f'
sql += ' LEFT JOIN `deletion_tasks` AS t ON t.`id` = f.`id`'
sql += ' LEFT JOIN `fts_deletion_batches` AS b ON b.`id` = f.`fts_batch_id`'
sql += ' WHERE t.`id` IS NULL OR b.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `fts_transfer_batches` AS f'
sql += ' LEFT JOIN `transfer_batches` AS t ON t.`id` = f.`batch_id`'
sql += ' WHERE t.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `fts_deletion_batches` AS f'
sql += ' LEFT JOIN `deletion_batches` AS t ON t.`id` = f.`batch_id`'
sql += ' WHERE t.`id` IS NULL'
self.db.query(sql)
# Delete the source tasks - caution: wipes out all tasks when switching the operation backend
sql = 'DELETE FROM t USING `transfer_tasks` AS t'
sql += ' LEFT JOIN `fts_transfer_tasks` AS f ON f.`id` = t.`id`'
sql += ' WHERE f.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM t USING `deletion_tasks` AS t'
sql += ' LEFT JOIN `fts_deletion_tasks` AS f ON f.`id` = t.`id`'
sql += ' WHERE f.`id` IS NULL'
self.db.query(sql)
def get_transfer_status(self, batch_id): #override
if self.server_id == 0:
self._set_server_id()
results = self._get_status(batch_id, 'transfer')
staged_tasks = []
for task_id, status, exitcode, msg, start_time, finish_time in self._get_status(
batch_id, 'staging'):
if status == FileQuery.STAT_DONE:
staged_tasks.append(task_id)
results.append(
(task_id, FileQuery.STAT_QUEUED, -1, None, None, None))
else:
# these tasks won't appear in results from _get_status('transfer')
# because no transfer jobs have been submitted yet
results.append(
(task_id, status, exitcode, None, start_time, finish_time))
if len(staged_tasks) != 0:
transfers = []
pfn_to_tid = {}
for task_id, source_pfn, dest_pfn, checksum, filesize in self.db.select_many(
'fts_staging_queue',
('id', 'source', 'destination', 'checksum', 'size'), 'id',
staged_tasks):
transfers.append(
fts3.new_transfer(source_pfn,
dest_pfn,
checksum=checksum,
filesize=filesize))
pfn_to_tid[dest_pfn] = task_id
if self.checksum_algorithm:
verify_checksum = 'target'
else:
verify_checksum = None
job = fts3.new_job(transfers,
retry=self.fts_retry,
overwrite=True,
verify_checksum=verify_checksum,
metadata=self.metadata_string)
success = self._submit_job(job, 'transfer', batch_id, pfn_to_tid)
if success and not self._read_only:
self.db.delete_many('fts_staging_queue', 'id',
pfn_to_tid.values())
return results
def get_deletion_status(self, batch_id): #override
if self.server_id == 0:
self._set_server_id()
return self._get_status(batch_id, 'deletion')
def write_transfer_history(self, history_db, task_id,
history_id): #override
self._write_history(history_db, task_id, history_id, 'transfer')
def write_deletion_history(self, history_db, task_id,
history_id): #override
self._write_history(history_db, task_id, history_id, 'deletion')
def forget_transfer_status(self, task_id): #override
return self._forget_status(task_id, 'transfer')
def forget_deletion_status(self, task_id): #override
return self._forget_status(task_id, 'deletion')
def forget_transfer_batch(self, task_id): #override
return self._forget_batch(task_id, 'transfer')
def forget_deletion_batch(self, task_id): #override
return self._forget_batch(task_id, 'deletion')
def _ftscall(self, method, *args, **kwd):
return self._do_ftscall(binding=(method, args, kwd))
def _ftscallurl(self, url):
# Call to FTS URLs that don't have python bindings
return self._do_ftscall(url=url)
def _do_ftscall(self, binding=None, url=None):
if self._context is None:
# request_class = Request -> use "requests"-based https call (instead of default PyCURL,
# which may not be able to handle proxy certificates depending on the cURL installation)
# verify = False -> do not verify the server certificate
context = fts3.Context(self.server_url,
ucert=self.x509proxy,
ukey=self.x509proxy,
request_class=Request,
verify=False)
if self.keep_context:
self._context = context
else:
context = self._context
if binding is not None:
reqstring = binding[0]
else:
reqstring = url
LOG.debug('FTS: %s', reqstring)
wait_time = 1.
for attempt in xrange(10):
try:
if binding is not None:
method, args, kwd = binding
return getattr(fts3, method)(context, *args, **kwd)
else:
return json.loads(context.get(url))
except fts_exceptions.ServerError as exc:
if str(exc.reason) == '500':
# Internal server error - let's try again
pass
except fts_exceptions.TryAgain:
pass
time.sleep(wait_time)
wait_time *= 1.5
LOG.error('Failed to communicate with FTS server: %s', reqstring)
raise RuntimeError('Failed to communicate with FTS server: %s' %
reqstring)
def _submit_job(self, job, optype, batch_id, pfn_to_tid):
if self._read_only:
job_id = 'test'
else:
try:
job_id = self._ftscall('submit', job)
except:
exc_type, exc, tb = sys.exc_info()
LOG.error('Failed to submit %s to FTS: Exception %s (%s)',
optype, exc_type.__name__, str(exc))
return False
LOG.debug('FTS job id: %s', job_id)
# list of file-level operations (one-to-one with pfn)
try:
if optype == 'transfer' or optype == 'staging':
key = 'files'
else:
key = 'dm'
fts_files = self._ftscall('get_job_status',
job_id=job_id,
list_files=True)[key]
except:
exc_type, exc, tb = sys.exc_info()
LOG.error(
'Failed to get status of job %s from FTS: Exception %s (%s)',
job_id, exc_type.__name__, str(exc))
return False
if self.server_id == 0:
self._set_server_id()
if optype == 'transfer' or optype == 'staging':
table_name = 'fts_transfer_batches'
columns = ('batch_id', 'task_type', 'fts_server_id', 'job_id')
values = (batch_id, optype, self.server_id, job_id)
else:
table_name = 'fts_deletion_batches'
columns = ('batch_id', 'fts_server_id', 'job_id')
values = (batch_id, self.server_id, job_id)
if not self._read_only:
fts_batch_id = self.db.insert_get_id(table_name,
columns=columns,
values=values)
if optype == 'transfer' or optype == 'staging':
table_name = 'fts_transfer_tasks'
pfn_key = 'dest_surl'
else:
table_name = 'fts_deletion_tasks'
pfn_key = 'source_surl'
fields = ('id', 'fts_batch_id', 'fts_file_id')
mapping = lambda f: (pfn_to_tid[f[pfn_key]], fts_batch_id, f['file_id']
)
if not self._read_only:
self.db.insert_many(table_name,
fields,
mapping,
fts_files,
do_update=True,
update_columns=('fts_batch_id', 'fts_file_id'))
return True
def _cancel(self, task_ids, optype):
sql = 'SELECT b.`job_id`, f.`fts_file_id` FROM `fts_{op}_tasks` AS f'
sql += ' INNER JOIN `fts_{op}_batches` AS b ON b.`id` = f.`fts_batch_id`'
result = self.db.execute_many(sql.format(op=optype),
MySQL.bare('f.`id`'), task_ids)
by_job = collections.defaultdict(list)
for job_id, file_id in result:
by_job[job_id].append(file_id)
if not self._read_only:
for job_id, ids in by_job.iteritems():
try:
self._ftscall('cancel', job_id, file_ids=ids)
except:
LOG.error('Failed to cancel FTS job %s', job_id)
def _get_status(self, batch_id, optype):
if optype == 'transfer' or optype == 'staging':
sql = 'SELECT `id`, `job_id` FROM `fts_transfer_batches`'
sql += ' WHERE `task_type` = %s AND `fts_server_id` = %s AND `batch_id` = %s'
batch_data = self.db.query(sql, optype, self.server_id, batch_id)
task_table_name = 'fts_transfer_tasks'
else:
sql = 'SELECT `id`, `job_id` FROM `fts_deletion_batches`'
sql += ' WHERE `fts_server_id` = %s AND `batch_id` = %s'
batch_data = self.db.query(sql, self.server_id, batch_id)
task_table_name = 'fts_deletion_tasks'
message_pattern = re.compile(
'(?:DESTINATION|SOURCE|TRANSFER|DELETION) \[([0-9]+)\] (.*)')
results = []
for fts_batch_id, job_id in batch_data:
LOG.debug('Checking status of FTS %s batch %s', optype, job_id)
sql = 'SELECT `fts_file_id`, `id` FROM `{table}` WHERE `fts_batch_id` = %s'.format(
table=task_table_name)
fts_to_task = dict(self.db.xquery(sql, fts_batch_id))
try:
result = self._ftscall('get_job_status',
job_id=job_id,
list_files=True)
except:
LOG.error('Failed to get job status for FTS job %s', job_id)
continue
if optype == 'transfer' or optype == 'staging':
fts_files = result['files']
else:
fts_files = result['dm']
for fts_file in fts_files:
try:
task_id = fts_to_task[fts_file['file_id']]
except KeyError:
continue
state = fts_file['file_state']
exitcode = -1
start_time = None
finish_time = None
get_time = False
try:
message = fts_file['reason']
except KeyError:
message = None
if message is not None:
# Check if reason follows a known format (from which we can get the exit code)
matches = message_pattern.match(message)
if matches is not None:
exitcode = int(matches.group(1))
message = matches.group(2)
# Additionally, if the message is a known one, convert the exit code
c = find_msg_code(message)
if c is not None:
exitcode = c
# HDFS site with gridftp-hdfs gives a I/O error (500) when the file is not there
if optype == 'deletion' and 'Input/output error' in message:
exitcode = errno.ENOENT
if state == 'FINISHED':
status = FileQuery.STAT_DONE
exitcode = 0
get_time = True
elif state == 'FAILED':
status = FileQuery.STAT_FAILED
get_time = True
elif state == 'CANCELED':
status = FileQuery.STAT_CANCELLED
get_time = True
elif state == 'SUBMITTED':
status = FileQuery.STAT_NEW
else:
status = FileQuery.STAT_QUEUED
if optype == 'transfer' and exitcode == errno.EEXIST:
# Transfer + destination exists -> not an error
status = FileQuery.STAT_DONE
exitcode = 0
elif optype == 'deletion' and exitcode == errno.ENOENT:
# Deletion + destination does not exist -> not an error
status = FileQuery.STAT_DONE
exitcode = 0
if get_time:
try:
start_time = calendar.timegm(
time.strptime(fts_file['start_time'],
'%Y-%m-%dT%H:%M:%S'))
except TypeError: # start time is NULL (can happen when the job is cancelled)
start_time = None
try:
finish_time = calendar.timegm(
time.strptime(fts_file['finish_time'],
'%Y-%m-%dT%H:%M:%S'))
except TypeError:
start_time = None
LOG.debug('%s %d: %s, %d, %s, %s, %s', optype, task_id,
FileQuery.status_name(status), exitcode, message,
start_time, finish_time)
results.append((task_id, status, exitcode, message, start_time,
finish_time))
return results
def _write_history(self, history_db, task_id, history_id, optype):
if not self._read_only:
history_db.db.insert_update('fts_servers', ('url', ),
self.server_url)
try:
server_id = history_db.db.query(
'SELECT `id` FROM `fts_servers` WHERE `url` = %s',
self.server_url)[0]
except IndexError:
server_id = 0
sql = 'SELECT b.`job_id`, t.`fts_file_id` FROM `fts_{op}_tasks` AS t'
sql += ' INNER JOIN `fts_{op}_batches` AS b ON b.`id` = t.`fts_batch_id`'
sql += ' WHERE t.`id` = %s'
try:
fts_job_id, fts_file_id = self.db.query(sql.format(op=optype),
task_id)[0]
except IndexError:
return
if not self._read_only:
history_db.db.insert_update('fts_batches',
('fts_server_id', 'job_id'), server_id,
fts_job_id)
batch_id = history_db.db.query(
'SELECT `id` FROM `fts_batches` WHERE `fts_server_id` = %s AND `job_id` = %s',
server_id, fts_job_id)[0]
history_db.db.insert_update('fts_file_{op}s'.format(op=optype),
('id', 'fts_batch_id', 'fts_file_id'),
history_id, batch_id, fts_file_id)
def _forget_status(self, task_id, optype):
if self._read_only:
return
sql = 'DELETE FROM `fts_{optype}_tasks` WHERE `id` = %s'.format(
optype=optype)
self.db.query(sql, task_id)
def _forget_batch(self, batch_id, optype):
if self._read_only:
return
sql = 'DELETE FROM `fts_{optype}_batches` WHERE `batch_id` = %s'.format(
optype=optype)
self.db.query(sql, batch_id)
def _set_server_id(self):
if not self._read_only:
self.db.query(
'INSERT INTO `fts_servers` (`url`) VALUES (%s) ON DUPLICATE KEY UPDATE `url`=VALUES(`url`)',
self.server_url)
result = self.db.query(
'SELECT `id` FROM `fts_servers` WHERE `url` = %s', self.server_url)
if len(result) == 0:
self.server_id = 0
else:
self.server_id = result[0]
def _get_lock(self, request, valid_only = False):
sql = 'SELECT l.`id`, l.`user`, l.`dn`, s.`name`, l.`item`, l.`sites`, l.`groups`,'
sql += ' UNIX_TIMESTAMP(l.`lock_date`), UNIX_TIMESTAMP(l.`expiration_date`), l.`comment`'
sql += ' FROM `detox_locks` AS l'
sql += ' LEFT JOIN `user_services` AS s ON s.`id` = l.`service_id`'
constraints = []
args = []
user_const = -1
if 'lockid' in request:
constraints.append('l.`id` IN %s' % MySQL.stringify_sequence(request['lockid']))
if 'user' in request:
user_const = len(constraints)
constraints.append('l.`user` IN %s' % MySQL.stringify_sequence(request['user']))
if 'service' in request:
constraints.append('s.`name` = %s')
args.append(request['service'])
if 'item' in request:
constraints.append('l.`item` = %s')
args.append(request['item'])
if 'sites' in request:
constraints.append('l.`sites` IN %s' % MySQL.stringify_sequence(request['sites']))
if 'groups' in request:
constraints.append('l.`groups` IN %s' % MySQL.stringify_sequence(request['groups']))
if 'created_before' in request:
constraints.append('l.`lock_date` <= FROM_UNIXTIME(%s)')
args.append(request['created_before'])
if 'created_after' in request:
constraints.append('l.`lock_date` >= FROM_UNIXTIME(%s)')
args.append(request['created_after'])
if 'expires_before' in request:
constraints.append('l.`expiration_date` <= FROM_UNIXTIME(%s)')
args.append(request['expires_before'])
if 'expires_after' in request:
constraints.append('l.`expiration_date` >= FROM_UNIXTIME(%s)')
args.append(request['expires_after'])
if len(constraints) != 0:
sql += ' WHERE ' + ' AND '.join(constraints)
existing = []
for lock_id, user, dn, service, item, site, group, lock_date, expiration_date, comment in self.registry.db.xquery(sql, *args):
lock = {
'lockid': lock_id,
'user': user,
'dn': dn,
'item': item,
'locked': time.strftime('%Y-%m-%d %H:%M:%S UTC', time.gmtime(lock_date)),
'expires': time.strftime('%Y-%m-%d %H:%M:%S UTC', time.gmtime(expiration_date))
}
if service is not None:
lock['service'] = service
if site is not None:
lock['sites'] = site
if group is not None:
lock['groups'] = group
if comment is not None:
lock['comment'] = comment
existing.append(lock)
if valid_only or ('lockid' in request and len(existing) != 0):
return existing
sql = 'SELECT l.`id`, u.`name`, u.`dn`, s.`name`, l.`item`, l.`sites`, l.`groups`,'
sql += ' UNIX_TIMESTAMP(l.`lock_date`), UNIX_TIMESTAMP(l.`unlock_date`), UNIX_TIMESTAMP(l.`expiration_date`), l.`comment`'
sql += ' FROM `detox_locks` AS l'
sql += ' LEFT JOIN `users` AS u ON u.`id` = l.`user_id`'
sql += ' LEFT JOIN `user_services` AS s ON s.`id` = l.`service_id`'
if len(constraints) != 0:
if user_const != -1:
constraints[user_const] = 'u.`name` IN %s' % MySQL.stringify_sequence(request['user'])
sql += ' WHERE ' + ' AND '.join(constraints)
for lock_id, user, dn, service, item, site, group, lock_date, unlock_date, expiration_date, comment in self.history.db.xquery(sql, *args):
lock = {
'lockid': lock_id,
'user': user,
'dn': dn,
'item': item,
'locked': time.strftime('%Y-%m-%d %H:%M:%S UTC', time.gmtime(lock_date)),
'unlocked': time.strftime('%Y-%m-%d %H:%M:%S UTC', time.gmtime(unlock_date)),
'expires': time.strftime('%Y-%m-%d %H:%M:%S UTC', time.gmtime(expiration_date))
}
if service is not None:
lock['service'] = service
if site is not None:
lock['sites'] = site
if group is not None:
lock['groups'] = group
if comment is not None:
lock['comment'] = comment
existing.append(lock)
return existing
class RLFSM(object):
"""
File operations manager using MySQL tables for queue bookkeeping. Also implies the
inventory backend is MySQL.
"""
class Subscription(object):
__slots__ = ['id', 'status', 'file', 'destination', 'disk_sources', 'tape_sources', 'failed_sources', 'hold_reason']
def __init__(self, id, status, file, destination, disk_sources, tape_sources, failed_sources = None, hold_reason = None):
self.id = id
self.status = status
self.file = file
self.destination = destination
self.disk_sources = disk_sources
self.tape_sources = tape_sources
self.failed_sources = failed_sources
self.hold_reason = hold_reason
class TransferTask(object):
__slots__ = ['id', 'subscription', 'source']
def __init__(self, subscription, source):
self.id = None
self.subscription = subscription
self.source = source
class Desubscription(object):
__slots__ = ['id', 'status', 'file', 'site']
def __init__(self, id, status, file, site):
self.id = id
self.status = status
self.file = file
self.site = site
class DeletionTask(object):
__slots__ = ['id', 'desubscription']
def __init__(self, desubscription):
self.id = None
self.desubscription = desubscription
# default config
_config = ''
@staticmethod
def set_default(config):
RLFSM._config = Configuration(config)
def __init__(self, config = None):
if config is None:
config = RLFSM._config
# Handle to the inventory DB
self.db = MySQL(config.db.db_params)
# Handle to the history DB
self.history_db = HistoryDatabase(config.get('history', None))
# FileTransferOperation backend (can make it a map from (source, dest) to operator)
self.transfer_operations = []
if 'transfer' in config:
for condition_text, module, conf in config.transfer:
if condition_text is None: # default
condition = None
else:
condition = Condition(condition_text, site_variables)
self.transfer_operations.append((condition, FileTransferOperation.get_instance(module, conf)))
if 'transfer_query' in config:
self.transfer_queries = []
for condition_text, module, conf in config.transfer_query:
if condition_text is None: # default
condition = None
else:
condition = Condition(condition_text, site_variables)
self.transfer_queries.append(condition, FileTransferQuery.get_instance(module, conf))
else:
self.transfer_queries = self.transfer_operations
if 'deletion' in config:
self.deletion_operations = []
for condition_text, module, conf in config.deletion:
if condition_text is None: # default
condition = None
else:
condition = Condition(condition_text, site_variables)
self.deletion_operations.append(condition, FileDeletionOperation.get_instance(module, conf))
else:
self.deletion_operations = self.transfer_operations
if 'deletion_query' in config:
self.deletion_queries = []
for condition_text, module, conf in config.deletion_query:
if condition_text is None: # default
condition = None
else:
condition = Condition(condition_text, site_variables)
self.deletion_queries.append(condition, FileDeletionQuery.get_instance(module, conf))
else:
self.deletion_queries = self.deletion_operations
self.sites_in_downtime = []
# Cycle thread
self.main_cycle = None
self.cycle_stop = threading.Event()
self.set_read_only(config.get('read_only', False))
def set_read_only(self, value = True):
self._read_only = value
self.history_db.set_read_only(value)
for _, op in self.transfer_operations:
op.set_read_only(value)
if self.transfer_queries is not self.transfer_operations:
for _, qry in self.transfer_queries:
qry.set_read_only(value)
if self.deletion_operations is not self.transfer_operations:
for _, op in self.deletion_operations:
op.set_read_only(value)
if self.deletion_queries is not self.deletion_operations:
for _, qry in self.deletion_queries:
qry.set_read_only(value)
def start(self, inventory):
"""
Start the file operations management cycle. Issue transfer and deletion tasks to the backend.
"""
if self.main_cycle is not None:
return
LOG.info('Starting file operations manager')
self.main_cycle = threading.Thread(target = self._run_cycle, name = 'FOM', args = (inventory,))
self.main_cycle.start()
LOG.info('Started file operations manager.')
def stop(self):
"""
Stop the file operations management cycle.
"""
LOG.info('Stopping file operations manager.')
self.cycle_stop.set()
self.main_cycle.join()
self.main_cycle = None
self.cycle_stop.clear()
def transfer_files(self, inventory):
"""
Routine for managing file transfers.
1. Query the file transfer agent and update the status of known subscriptions.
2. Pick up new subscriptions.
3. Select the source for each transfer.
4. Organize the transfers into batches.
5. Start the transfers.
The routine can be stopped almost at any point without corrupting the state machine.
The only cases where stopping is problematic are within self._update_status and self._start_transfers.
@param inventory The inventory.
"""
self._cleanup()
LOG.debug('Clearing cancelled transfer tasks.')
task_ids = self._get_cancelled_tasks('transfer')
for _, op in self.transfer_operations:
op.cancel_transfers(task_ids)
if self.cycle_stop.is_set():
return
LOG.debug('Fetching subscription status from the file operation agent.')
self._update_status('transfer')
if self.cycle_stop.is_set():
return
LOG.debug('Filtering out transfers to unavailable destinations.')
if not self._read_only:
for site in self.sites_in_downtime:
self.db.query('UPDATE `file_subscriptions` SET `status` = \'held\', `hold_reason` = \'site_unavailable\' WHERE `site_id` = (SELECT `id` FROM `sites` WHERE `name` = %s)', site.name)
if self.cycle_stop.is_set():
return
LOG.debug('Collecting new transfer subscriptions.')
subscriptions = self.get_subscriptions(inventory, op = 'transfer', status = ['new', 'retry'])
if self.cycle_stop.is_set():
return
# We check the operators here because get_subscriptions does some state update and we want that to happen
pending_count = {}
n_available = 0
for _, op in self.transfer_operations:
pending_count[op] = op.num_pending_transfers()
if pending_count[op] <= op.max_pending_transfers:
n_available += 1
if n_available == 0:
LOG.info('No transfer operators are available at the moment.')
return
LOG.debug('Identifying source sites for %d transfers.', len(subscriptions))
tasks = self._select_source(subscriptions)
if self.cycle_stop.is_set():
return
LOG.debug('Organizing %d transfers into batches.', len(tasks))
by_dest = {}
for task in tasks:
try:
by_dest[task.subscription.destination].append(task)
except KeyError:
by_dest[task.subscription.destination] = [task]
def issue_tasks(op, my_tasks):
if len(my_tasks) == 0:
return 0, 0, 0
batches = op.form_batches(my_tasks)
if self.cycle_stop.is_set():
return 0, 0, 0
nb = 0
ns = 0
nf = 0
LOG.debug('Issuing transfer tasks.')
for batch_tasks in batches:
s, f = self._start_transfers(op, batch_tasks)
nb += 1
ns += s
nf += f
pending_count[op] += s
if pending_count[op] > op.max_pending_transfers:
break
if self.cycle_stop.is_set():
break
return nb, ns, nf
num_success = 0
num_failure = 0
num_batches = 0
for condition, op in self.transfer_operations:
if condition is None:
default_op = op
continue
my_tasks = []
for site in by_dest.keys():
if condition.match(site):
my_tasks.extend(by_dest.pop(site))
if pending_count[op] > op.max_pending_transfers:
continue
nb, ns, nf = issue_tasks(op, my_tasks)
num_batches += nb
num_success += ns
num_failure += nf
if self.cycle_stop.is_set():
break
else:
# default condition
if pending_count[default_op] <= default_op.max_pending_transfers:
my_tasks = sum(by_dest.itervalues(), [])
nb, ns, nf = issue_tasks(default_op, my_tasks)
num_batches += nb
num_success += ns
num_failure += nf
if num_success + num_failure != 0:
LOG.info('Issued transfer tasks: %d success, %d failure. %d batches.', num_success, num_failure, num_batches)
else:
LOG.debug('Issued transfer tasks: %d success, %d failure. %d batches.', num_success, num_failure, num_batches)
def delete_files(self, inventory):
"""
Routine for managing file deletions.
1. Query the file deletion agent and update the status of known subscriptions.
2. Register the paths for completed deletions as candidates of empty directories.
3. Pick up new subscriptions.
4. Organize the deletions into batches.
5. Start the deletions.
The routine can be stopped almost at any point without corrupting the state machine.
The only cases where stopping is problematic are within self._update_status and self._start_deletions.
@param inventory The inventory.
"""
self._cleanup()
LOG.debug('Clearing cancelled deletion tasks.')
task_ids = self._get_cancelled_tasks('deletion')
for _, op in self.deletion_operations:
op.cancel_deletions(task_ids)
if self.cycle_stop.is_set():
return
LOG.debug('Fetching deletion status from the file operation agent.')
completed = self._update_status('deletion')
LOG.debug('Recording candidates for empty directories.')
self._set_dirclean_candidates(completed, inventory)
if self.cycle_stop.is_set():
return
LOG.debug('Filtering out transfers to unavailable destinations.')
if not self._read_only:
for site in self.sites_in_downtime:
self.db.query('UPDATE `file_subscriptions` SET `status` = \'held\', `hold_reason` = \'site_unavailable\' WHERE `site_id` = (SELECT `id` FROM `sites` WHERE `name` = %s)', site.name)
if self.cycle_stop.is_set():
return
LOG.debug('Collecting new deletion subscriptions.')
desubscriptions = self.get_subscriptions(inventory, op = 'deletion', status = ['new', 'retry'])
if self.cycle_stop.is_set():
return
# See transfer_files
pending_count = {}
n_available = 0
for _, op in self.deletion_operations:
pending_count[op] = op.num_pending_deletions()
if pending_count[op] <= op.max_pending_deletions:
n_available += 1
if n_available == 0:
LOG.info('No deletion operators are available at the moment.')
return
tasks = [RLFSM.DeletionTask(d) for d in desubscriptions]
by_site = {}
for task in tasks:
try:
by_site[task.desubscription.site].append(task)
except KeyError:
by_site[task.desubscription.site] = [task]
LOG.debug('Organizing the deletions into batches.')
def issue_tasks(op, my_tasks):
if len(my_tasks) == 0:
return 0, 0, 0
batches = op.form_batches(my_tasks)
if self.cycle_stop.is_set():
return 0, 0, 0
nb = 0
ns = 0
nf = 0
LOG.debug('Issuing deletion tasks for %d batches.', len(batches))
for batch_tasks in batches:
LOG.debug('Batch with %d tasks.', len(batch_tasks))
s, f = self._start_deletions(op, batch_tasks)
nb += 1
ns += s
nf += f
pending_count[op] += s
if pending_count[op] > op.max_pending_deletions:
break
if self.cycle_stop.is_set():
break
return nb, ns, nf
num_success = 0
num_failure = 0
num_batches = 0
for condition, op in self.deletion_operations:
if condition is None:
default_op = op
continue
my_tasks = []
for site in by_site.keys():
if condition.match(site):
my_tasks.extend(by_site.pop(site))
if pending_count[op] > op.max_pending_deletions:
continue
nb, ns, nf = issue_tasks(op, my_tasks)
num_batches += nb;
num_success += ns;
num_failure += nf;
if self.cycle_stop.is_set():
break
else:
# default condition
if pending_count[default_op] <= default_op.max_pending_deletions:
my_tasks = sum(by_site.itervalues(), [])
nb, ns, nf = issue_tasks(default_op, my_tasks)
num_batches += nb;
num_success += ns;
num_failure += nf;
if num_success + num_failure != 0:
LOG.info('Issued deletion tasks: %d success, %d failure. %d batches.', num_success, num_failure, num_batches)
else:
LOG.debug('Issued deletion tasks: %d success, %d failure. %d batches.', num_success, num_failure, num_batches)
def subscribe_file(self, site, lfile):
"""
Make a file subscription at a site.
@param site Site object
@param lfile File object
"""
LOG.debug('Subscribing %s to %s', lfile.lfn, site.name)
self._subscribe(site, lfile, 0)
def desubscribe_file(self, site, lfile):
"""
Book deletion of a file at a site.
@param site Site object
@param lfile File object
"""
LOG.debug('Desubscribing %s from %s', lfile.lfn, site.name)
self._subscribe(site, lfile, 1)
def cancel_subscription(self, site = None, lfile = None, sub_id = None):
sql = 'UPDATE `file_subscriptions` SET `status` = \'cancelled\' WHERE '
if sub_id is None:
if site is None or lfile is None:
raise OperationalError('site and lfile must be non-None.')
sql += '`file_id` = %s AND `site_id` = %s'
if not self._read_only:
self.db.query(sql, lfile.id, site.id)
else:
sql += '`id` = %s'
if not self._read_only:
self.db.query(sql, sub_id)
def cancel_desubscription(self, site = None, lfile = None, sub_id = None):
self.cancel_subscription(site = site, lfile = lfile, sub_id = sub_id)
def convert_pre_subscriptions(self, inventory):
sql = 'SELECT `id`, `file_name`, `site_name`, UNIX_TIMESTAMP(`created`), `delete` FROM `file_pre_subscriptions`'
sids = []
for sid, lfn, site_name, created, delete in self.db.query(sql):
lfile = inventory.find_file(lfn)
if lfile is None or lfile.id == 0:
continue
try:
site = inventory.sites[site_name]
except KeyError:
continue
if site.id == 0:
continue
sids.append(sid)
self._subscribe(site, lfile, delete, created = created)
if not self._read_only:
self.db.lock_tables(write = ['file_pre_subscriptions'])
self.db.delete_many('file_pre_subscriptions', 'id', sids)
if self.db.query('SELECT COUNT(*) FROM `file_pre_subscriptions`')[0] == 0:
self.db.query('ALTER TABLE `file_pre_subscriptions` AUTO_INCREMENT = 1')
self.db.unlock_tables()
def get_subscriptions(self, inventory, op = None, status = None):
"""
Return a list containing Subscription and Desubscription objects ordered by the id.
@param inventory Dynamo inventory
@param op If set to 'transfer' or 'deletion', limit to the operation type.
@param status If not None, set to list of status strings to limit the query.
"""
# First convert all pre-subscriptions
self.convert_pre_subscriptions(inventory)
subscriptions = []
get_all = 'SELECT u.`id`, u.`status`, u.`delete`, f.`block_id`, f.`name`, s.`name`, u.`hold_reason` FROM `file_subscriptions` AS u'
get_all += ' INNER JOIN `files` AS f ON f.`id` = u.`file_id`'
get_all += ' INNER JOIN `sites` AS s ON s.`id` = u.`site_id`'
constraints = []
if op == 'transfer':
constraints.append('u.`delete` = 0')
elif op == 'deletion':
constraints.append('u.`delete` = 1')
if status is not None:
constraints.append('u.`status` IN ' + MySQL.stringify_sequence(status))
if len(constraints) != 0:
get_all += ' WHERE ' + ' AND '.join(constraints)
get_all += ' ORDER BY s.`id`, f.`block_id`'
get_tried_sites = 'SELECT s.`name`, f.`exitcode` FROM `failed_transfers` AS f'
get_tried_sites += ' INNER JOIN `sites` AS s ON s.`id` = f.`source_id`'
get_tried_sites += ' WHERE f.`subscription_id` = %s'
_destination_name = ''
_block_id = -1
no_source = []
all_failed = []
to_done = []
COPY = 0
DELETE = 1
for row in self.db.query(get_all):
sub_id, st, optype, block_id, file_name, site_name, hold_reason = row
if site_name != _destination_name:
_destination_name = site_name
try:
destination = inventory.sites[site_name]
except KeyError:
# Site disappeared from the inventory - weird but can happen!
destination = None
_block_id = -1
if destination is None:
continue
if block_id != _block_id:
lfile = inventory.find_file(file_name)
if lfile is None:
# Dataset, block, or file was deleted from the inventory earlier in this process (deletion not reflected in the inventory store yet)
continue
_block_id = block_id
block = lfile.block
dest_replica = block.find_replica(destination)
else:
lfile = block.find_file(file_name)
if lfile is None:
# Dataset, block, or file was deleted from the inventory earlier in this process (deletion not reflected in the inventory store yet)
continue
if dest_replica is None and st != 'cancelled':
LOG.debug('Destination replica for %s does not exist. Canceling the subscription.', file_name)
# Replica was invalidated
sql = 'UPDATE `file_subscriptions` SET `status` = \'cancelled\''
sql += ' WHERE `id` = %s'
if not self._read_only:
self.db.query(sql, sub_id)
if status is not None and 'cancelled' not in status:
# We are not asked to return cancelled subscriptions
continue
st = 'cancelled'
if optype == COPY:
disk_sources = None
tape_sources = None
failed_sources = None
if st not in ('done', 'held', 'cancelled'):
if dest_replica.has_file(lfile):
LOG.debug('%s already exists at %s', file_name, site_name)
to_done.append(sub_id)
st = 'done'
else:
disk_sources = []
tape_sources = []
for replica in block.replicas:
if replica.site == destination or replica.site.status != Site.STAT_READY:
continue
if replica.has_file(lfile):
if replica.site.storage_type == Site.TYPE_DISK:
disk_sources.append(replica.site)
elif replica.site.storage_type == Site.TYPE_MSS:
tape_sources.append(replica.site)
if len(disk_sources) + len(tape_sources) == 0:
LOG.warning('Transfer of %s to %s has no source.', file_name, site_name)
no_source.append(sub_id)
st = 'held'
if st == 'retry':
failed_sources = {}
for source_name, exitcode in self.db.query(get_tried_sites, sub_id):
try:
source = inventory.sites[source_name]
except KeyError:
# this site may have been deleted in this process
continue
try:
failed_sources[source].append(exitcode)
except KeyError:
if source not in disk_sources and source not in tape_sources:
# this is not a source site any more
continue
failed_sources[source] = [exitcode]
if len(failed_sources) == len(disk_sources) + len(tape_sources):
# transfers from all sites failed at least once
for codes in failed_sources.itervalues():
if codes[-1] not in irrecoverable_errors:
# This site failed for a recoverable reason
break
else:
# last failure from all sites due to irrecoverable errors
LOG.warning('Transfer of %s to %s failed from all sites.', file_name, site_name)
all_failed.append(sub_id)
st = 'held'
# st value may have changed - filter again
if status is None or st in status:
subscription = RLFSM.Subscription(sub_id, st, lfile, destination, disk_sources, tape_sources, failed_sources, hold_reason)
subscriptions.append(subscription)
elif optype == DELETE:
if st not in ('done', 'held', 'cancelled') and not dest_replica.has_file(lfile):
LOG.debug('%s is already gone from %s', file_name, site_name)
to_done.append(sub_id)
st = 'done'
if status is None or st in status:
desubscription = RLFSM.Desubscription(sub_id, st, lfile, destination)
subscriptions.append(desubscription)
if len(to_done) + len(no_source) + len(all_failed) != 0:
msg = 'Subscriptions terminated directly: %d done' % len(to_done)
if len(no_source) != 0:
msg += ', %d held with reason "no_source"' % len(no_source)
if len(all_failed) != 0:
msg += ', %d held with reason "all_failed"' % len(all_failed)
LOG.info(msg)
if not self._read_only:
self.db.execute_many('UPDATE `file_subscriptions` SET `status` = \'done\', `last_update` = NOW()', 'id', to_done)
self.db.execute_many('UPDATE `file_subscriptions` SET `status` = \'held\', `hold_reason` = \'no_source\', `last_update` = NOW()', 'id', no_source)
self.db.execute_many('UPDATE `file_subscriptions` SET `status` = \'held\', `hold_reason` = \'all_failed\', `last_update` = NOW()', 'id', all_failed)
# Clean up subscriptions for deleted files / sites
sql = 'DELETE FROM u USING `file_subscriptions` AS u'
sql += ' LEFT JOIN `files` AS f ON f.`id` = u.`file_id`'
sql += ' LEFT JOIN `sites` AS s ON s.`id` = u.`site_id`'
sql += ' WHERE f.`name` IS NULL OR s.`name` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `failed_transfers` AS f'
sql += ' LEFT JOIN `file_subscriptions` AS u ON u.`id` = f.`subscription_id`'
sql += ' WHERE u.`id` IS NULL'
self.db.query(sql)
return subscriptions
def close_subscriptions(self, done_ids):
"""
Get subscription completion acknowledgments.
"""
if not self._read_only:
self.db.delete_many('file_subscriptions', 'id', done_ids)
def release_subscription(self, subscription):
"""
Clear failed transfers list and set the subscription status to retry.
"""
if subscription.status != 'held':
return
if self._read_only:
return
self.db.query('DELETE FROM `failed_transfers` WHERE `subscription_id` = %s', subscription.id)
self.db.query('UPDATE `file_subscriptions` SET `status` = \'retry\' WHERE `id` = %s', subscription.id)
def _run_cycle(self, inventory):
while True:
if self.cycle_stop.is_set():
break
LOG.debug('Checking and executing new file transfer subscriptions.')
self.transfer_files(inventory)
if self.cycle_stop.is_set():
break
LOG.debug('Checking and executing new file deletion subscriptions.')
self.delete_files(inventory)
is_set = self.cycle_stop.wait(30)
if is_set: # is true if in Python 2.7 and the flag is set
break
def _cleanup(self):
if self._read_only:
return
# Make the tables consistent in case the previous cycles was terminated prematurely
# There should not be tasks with subscription status new
sql = 'DELETE FROM t USING `transfer_tasks` AS t'
sql += ' INNER JOIN `file_subscriptions` AS u ON u.`id` = t.`subscription_id`'
sql += ' WHERE u.`status` IN (\'new\', \'retry\')'
self.db.query(sql)
sql = 'DELETE FROM t USING `deletion_tasks` AS t'
sql += ' INNER JOIN `file_subscriptions` AS u ON u.`id` = t.`subscription_id`'
sql += ' WHERE u.`status` IN (\'new\', \'retry\')'
self.db.query(sql)
# There should not be batches with no tasks
sql = 'DELETE FROM b USING `transfer_batches` AS b LEFT JOIN `transfer_tasks` AS t ON t.`batch_id` = b.`id` WHERE t.`batch_id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM b USING `deletion_batches` AS b LEFT JOIN `deletion_tasks` AS t ON t.`batch_id` = b.`id` WHERE t.`batch_id` IS NULL'
self.db.query(sql)
# and tasks with no batches
sql = 'DELETE FROM t USING `transfer_tasks` AS t LEFT JOIN `transfer_batches` AS b ON b.`id` = t.`batch_id` WHERE b.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM t USING `deletion_tasks` AS t LEFT JOIN `deletion_batches` AS b ON b.`id` = t.`batch_id` WHERE b.`id` IS NULL'
self.db.query(sql)
# Cleanup the plugins (might delete tasks)
for _, op in self.transfer_operations:
op.cleanup()
if self.deletion_operations is not self.transfer_operations:
for _, op in self.deletion_operations:
op.cleanup()
# Reset inbatch subscriptions with no task to new state
sql = 'UPDATE `file_subscriptions` SET `status` = \'new\' WHERE `status` = \'inbatch\' AND `id` NOT IN (SELECT `subscription_id` FROM `transfer_tasks`) AND `id` NOT IN (SELECT `subscription_id` FROM `deletion_tasks`)'
self.db.query(sql)
# Delete canceled subscriptions with no task (ones with task need to be archived in update_status)
sql = 'DELETE FROM u USING `file_subscriptions` AS u LEFT JOIN `transfer_tasks` AS t ON t.`subscription_id` = u.`id` WHERE u.`delete` = 0 AND u.`status` = \'cancelled\' AND t.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM u USING `file_subscriptions` AS u LEFT JOIN `deletion_tasks` AS t ON t.`subscription_id` = u.`id` WHERE u.`delete` = 1 AND u.`status` = \'cancelled\' AND t.`id` IS NULL'
self.db.query(sql)
# Delete failed transfers with no subscription
sql = 'DELETE FROM f USING `failed_transfers` AS f LEFT JOIN `file_subscriptions` AS u ON u.`id` = f.`subscription_id` WHERE u.`id` IS NULL'
self.db.query(sql)
def _subscribe(self, site, lfile, delete, created = None):
opp_op = 0 if delete == 1 else 1
now = time.strftime('%Y-%m-%d %H:%M:%S')
if created is None:
created = now
else:
created = datetime.datetime(*time.localtime(created)[:6])
if lfile.id == 0 or site.id == 0:
# file is not registered in inventory store yet; update the presubscription
if not self._read_only:
fields = ('file_name', 'site_name', 'created', 'delete')
self.db.insert_update('file_pre_subscriptions', fields, lfile.lfn, site.name, now, delete, update_columns = ('delete',))
return
if not self._read_only:
self.db.lock_tables(write = ['file_subscriptions'])
try:
sql = 'UPDATE `file_subscriptions` SET `status` = \'cancelled\''
sql += ' WHERE `file_id` = %s AND `site_id` = %s AND `delete` = %s'
sql += ' AND `status` IN (\'new\', \'inbatch\', \'retry\', \'held\')'
if not self._read_only:
self.db.query(sql, lfile.id, site.id, opp_op)
fields = ('file_id', 'site_id', 'status', 'delete', 'created', 'last_update')
if not self._read_only:
self.db.insert_update('file_subscriptions', fields, lfile.id, site.id, 'new', delete, now, now, update_columns = ('status', 'last_update'))
finally:
if not self._read_only:
self.db.unlock_tables()
def _get_cancelled_tasks(self, optype):
if optype == 'transfer':
delete = 0
else:
delete = 1
sql = 'SELECT q.`id` FROM `{op}_tasks` AS q'.format(op = optype)
sql += ' INNER JOIN `file_subscriptions` AS u ON u.`id` = q.`subscription_id`'
sql += ' WHERE u.`status` = \'cancelled\' AND u.`delete` = %d' % delete
return self.db.query(sql)
def _update_status(self, optype):
if optype == 'transfer':
site_columns = 'ss.`name`, sd.`name`'
site_joins = ' INNER JOIN `sites` AS ss ON ss.`id` = q.`source_id`'
site_joins += ' INNER JOIN `sites` AS sd ON sd.`id` = u.`site_id`'
else:
site_columns = 's.`name`'
site_joins = ' INNER JOIN `sites` AS s ON s.`id` = u.`site_id`'
get_task_data = 'SELECT u.`id`, f.`name`, f.`size`, UNIX_TIMESTAMP(q.`created`), ' + site_columns + ' FROM `{op}_tasks` AS q'
get_task_data += ' INNER JOIN `file_subscriptions` AS u ON u.`id` = q.`subscription_id`'
get_task_data += ' INNER JOIN `files` AS f ON f.`id` = u.`file_id`'
get_task_data += site_joins
get_task_data += ' WHERE q.`id` = %s'
get_task_data = get_task_data.format(op = optype)
if optype == 'transfer':
history_table_name = 'file_transfers'
history_site_fields = ('source_id', 'destination_id')
else:
history_table_name = 'file_deletions'
history_site_fields = ('site_id',)
history_fields = ('file_id', 'exitcode', 'message', 'batch_id', 'created', 'started', 'finished', 'completed') + history_site_fields
if optype == 'transfer':
insert_failure = 'INSERT INTO `failed_transfers` (`id`, `subscription_id`, `source_id`, `exitcode`)'
insert_failure += ' SELECT `id`, `subscription_id`, `source_id`, %s FROM `transfer_tasks` WHERE `id` = %s'
insert_failure += ' ON DUPLICATE KEY UPDATE `id`=VALUES(`id`)'
delete_failures = 'DELETE FROM `failed_transfers` WHERE `subscription_id` = %s'
get_subscription_status = 'SELECT `status` FROM `file_subscriptions` WHERE `id` = %s'
update_subscription = 'UPDATE `file_subscriptions` SET `status` = %s, `last_update` = NOW() WHERE `id` = %s'
delete_subscription = 'DELETE FROM `file_subscriptions` WHERE `id` = %s'
delete_task = 'DELETE FROM `{op}_tasks` WHERE `id` = %s'.format(op = optype)
delete_batch = 'DELETE FROM `{op}_batches` WHERE `id` = %s'.format(op = optype)
done_subscriptions = []
num_success = 0
num_failure = 0
num_cancelled = 0
# Collect completed tasks
for batch_id in self.db.query('SELECT `id` FROM `{op}_batches`'.format(op = optype)):
results = []
if optype == 'transfer':
for _, query in self.transfer_queries:
results = query.get_transfer_status(batch_id)
if len(results) != 0:
break
else:
for _, query in self.deletion_queries:
results = query.get_deletion_status(batch_id)
if len(results) != 0:
break
batch_complete = True
for task_id, status, exitcode, message, start_time, finish_time in results:
# start_time and finish_time can be None
LOG.debug('%s result: %d %s %d %s %s', optype, task_id, FileQuery.status_name(status), exitcode, start_time, finish_time)
if status == FileQuery.STAT_DONE:
num_success += 1
elif status == FileQuery.STAT_FAILED:
num_failure += 1
elif status == FileQuery.STAT_CANCELLED:
num_cancelled += 1
else:
batch_complete = False
continue
try:
task_data = self.db.query(get_task_data, task_id)[0]
except IndexError:
LOG.warning('%s task %d got lost.', optype, task_id)
if optype == 'transfer':
query.forget_transfer_status(task_id)
else:
query.forget_deletion_status(task_id)
if not self._read_only:
self.db.query(delete_task, task_id)
continue
subscription_id, lfn, size, create_time = task_data[:4]
if optype == 'transfer':
source_name, dest_name = task_data[4:]
history_site_ids = (
self.history_db.save_sites([source_name], get_ids = True)[0],
self.history_db.save_sites([dest_name], get_ids = True)[0]
)
else:
site_name = task_data[4]
history_site_ids = (self.history_db.save_sites([site_name], get_ids = True)[0],)
file_id = self.history_db.save_files([(lfn, size)], get_ids = True)[0]
if start_time is None:
sql_start_time = None
else:
sql_start_time = datetime.datetime(*time.localtime(start_time)[:6])
if finish_time is None:
sql_finish_time = None
else:
sql_finish_time = datetime.datetime(*time.localtime(finish_time)[:6])
values = (file_id, exitcode, message, batch_id, datetime.datetime(*time.localtime(create_time)[:6]),
sql_start_time, sql_finish_time, MySQL.bare('NOW()')) + history_site_ids
if optype == 'transfer':
LOG.debug('Archiving transfer of %s from %s to %s (exitcode %d)', lfn, source_name, dest_name, exitcode)
else:
LOG.debug('Archiving deletion of %s at %s (exitcode %d)', lfn, site_name, exitcode)
if self._read_only:
history_id = 0
else:
history_id = self.history_db.db.insert_get_id(history_table_name, history_fields, values)
if optype == 'transfer':
query.write_transfer_history(self.history_db, task_id, history_id)
else:
query.write_deletion_history(self.history_db, task_id, history_id)
# We check the subscription status and update accordingly. Need to lock the tables.
if not self._read_only:
self.db.lock_tables(write = ['file_subscriptions'])
try:
subscription_status = self.db.query(get_subscription_status, subscription_id)[0]
if subscription_status == 'inbatch':
if status == FileQuery.STAT_DONE:
LOG.debug('Subscription %d done.', subscription_id)
if not self._read_only:
self.db.query(update_subscription, 'done', subscription_id)
elif status == FileQuery.STAT_FAILED:
LOG.debug('Subscription %d failed (exit code %d). Flagging retry.', subscription_id, exitcode)
if not self._read_only:
self.db.query(update_subscription, 'retry', subscription_id)
elif subscription_status == 'cancelled':
# subscription is cancelled and task terminated -> delete the subscription now, irrespective of the task status
LOG.debug('Subscription %d is cancelled.', subscription_id)
if not self._read_only:
self.db.query(delete_subscription, subscription_id)
finally:
if not self._read_only:
self.db.unlock_tables()
if not self._read_only:
if optype == 'transfer':
if subscription_status == 'cancelled' or (subscription_status == 'inbatch' and status == FileQuery.STAT_DONE):
# Delete entries from failed_transfers table
self.db.query(delete_failures, subscription_id)
elif subscription_status == 'inbatch' and status == FileQuery.STAT_FAILED:
# Insert entry to failed_transfers table
self.db.query(insert_failure, exitcode, task_id)
self.db.query(delete_task, task_id)
if status == FileQuery.STAT_DONE:
done_subscriptions.append(subscription_id)
if optype == 'transfer':
query.forget_transfer_status(task_id)
else:
query.forget_deletion_status(task_id)
if self.cycle_stop.is_set():
break
if batch_complete:
if not self._read_only:
self.db.query(delete_batch, batch_id)
if optype == 'transfer':
query.forget_transfer_batch(batch_id)
else:
query.forget_deletion_batch(batch_id)
if num_success + num_failure + num_cancelled != 0:
LOG.info('Archived file %s: %d succeeded, %d failed, %d cancelled.', optype, num_success, num_failure, num_cancelled)
else:
LOG.debug('Archived file %s: %d succeeded, %d failed, %d cancelled.', optype, num_success, num_failure, num_cancelled)
return done_subscriptions
def _select_source(self, subscriptions):
"""
Intelligently select the best source for each subscription.
@param subscriptions List of Subscription objects
@return List of TransferTask objects
"""
def find_site_to_try(sources, failed_sources):
not_tried = set(sources)
if failed_sources is not None:
not_tried -= set(failed_sources.iterkeys())
LOG.debug('%d sites not tried', len(not_tried))
if len(not_tried) == 0:
if failed_sources is None:
return None
# we've tried all sites. Did any of them fail with a recoverable error?
sites_to_retry = []
for site, codes in failed_sources.iteritems():
if site not in sources:
continue
if codes[-1] not in irrecoverable_errors:
sites_to_retry.append(site)
if len(sites_to_retry) == 0:
return None
else:
# select the least failed site
by_failure = sorted(sites_to_retry, key = lambda s: len(failed_sources[s]))
LOG.debug('%s has the least failures', by_failure[0].name)
return by_failure[0]
else:
LOG.debug('Selecting randomly')
return random.choice(list(not_tried))
tasks = []
for subscription in subscriptions:
LOG.debug('Selecting a disk source for subscription %d (%s to %s)', subscription.id, subscription.file.lfn, subscription.destination.name)
source = find_site_to_try(subscription.disk_sources, subscription.failed_sources)
if source is None:
LOG.debug('Selecting a tape source for subscription %d', subscription.id)
source = find_site_to_try(subscription.tape_sources, subscription.failed_sources)
if source is None:
# If both disk and tape failed irrecoveably, the subscription must be placed in held queue in get_subscriptions.
# Reaching this line means something is wrong.
LOG.warning('Could not find a source for transfer of %s to %s from %d disk and %d tape candidates.',
subscription.file.lfn, subscription.destination.name, len(subscription.disk_sources), len(subscription.tape_sources))
continue
tasks.append(RLFSM.TransferTask(subscription, source))
return tasks
def _start_transfers(self, transfer_operation, tasks):
# start the transfer of tasks. If batch submission fails, make progressively smaller batches until failing tasks are identified.
if self._read_only:
batch_id = 0
else:
self.db.query('INSERT INTO `transfer_batches` (`id`) VALUES (0)')
batch_id = self.db.last_insert_id
LOG.debug('New transfer batch %d for %d files.', batch_id, len(tasks))
# local time
now = time.strftime('%Y-%m-%d %H:%M:%S')
# need to create the transfer tasks first to have ids assigned
fields = ('subscription_id', 'source_id', 'batch_id', 'created')
mapping = lambda t: (t.subscription.id, t.source.id, batch_id, now)
if not self._read_only:
self.db.insert_many('transfer_tasks', fields, mapping, tasks)
# set the task ids
tasks_by_sub = dict((t.subscription.id, t) for t in tasks)
for task_id, subscription_id in self.db.xquery('SELECT `id`, `subscription_id` FROM `transfer_tasks` WHERE `batch_id` = %s', batch_id):
tasks_by_sub[subscription_id].id = task_id
result = transfer_operation.start_transfers(batch_id, tasks)
successful = [task for task, success in result.iteritems() if success]
if not self._read_only:
self.db.execute_many('UPDATE `file_subscriptions` SET `status` = \'inbatch\', `last_update` = NOW()', 'id', [t.subscription.id for t in successful])
if len(successful) != len(result):
failed = [task for task, success in result.iteritems() if not success]
for task in failed:
LOG.error('Cannot issue transfer of %s from %s to %s',
task.subscription.file.lfn, task.source.name, task.subscription.destination.name)
failed_ids = [t.id for t in failed]
sql = 'INSERT INTO `failed_transfers` (`id`, `subscription_id`, `source_id`, `exitcode`)'
sql += ' SELECT `id`, `subscription_id`, `source_id`, -1 FROM `transfer_tasks`'
self.db.execute_many(sql, 'id', failed_ids)
self.db.delete_many('transfer_tasks', 'id', failed_ids)
self.db.execute_many('UPDATE `file_subscriptions` SET `status` = \'retry\', `last_update` = NOW()', 'id', [t.subscription.id for t in failed])
return len(successful), len(result) - len(successful)
def _start_deletions(self, deletion_operation, tasks):
if self._read_only:
batch_id = 0
else:
self.db.query('INSERT INTO `deletion_batches` (`id`) VALUES (0)')
batch_id = self.db.last_insert_id
# local time
now = time.strftime('%Y-%m-%d %H:%M:%S')
fields = ('subscription_id', 'batch_id', 'created')
mapping = lambda t: (t.desubscription.id, batch_id, now)
if not self._read_only:
self.db.insert_many('deletion_tasks', fields, mapping, tasks)
# set the task ids
tasks_by_sub = dict((t.desubscription.id, t) for t in tasks)
for task_id, desubscription_id in self.db.xquery('SELECT `id`, `subscription_id` FROM `deletion_tasks` WHERE `batch_id` = %s', batch_id):
tasks_by_sub[desubscription_id].id = task_id
result = deletion_operation.start_deletions(batch_id, tasks)
successful = [task for task, success in result.iteritems() if success]
if not self._read_only:
self.db.execute_many('UPDATE `file_subscriptions` SET `status` = \'inbatch\', `last_update` = NOW()', 'id', [t.desubscription.id for t in successful])
if len(successful) != len(result):
failed = [task for task, success in result.iteritems() if not success]
for task in failed:
LOG.error('Cannot delete %s at %s',
task.desubscription.file.lfn, task.desubscription.site.name)
self.db.delete_many('deletion_tasks', 'id', [t.id for t in failed])
self.db.execute_many('UPDATE `file_subscriptions` SET `status` = \'held\', `last_update` = NOW()', 'id', [t.desubscription.id for t in failed])
return len(successful), len(result) - len(successful)
def _set_dirclean_candidates(self, subscription_ids, inventory):
site_dirs = {}
# Clean up directories of completed subscriptions
sql = 'SELECT s.`name`, f.`name` FROM `file_subscriptions` AS u'
sql += ' INNER JOIN `files` AS f ON f.`id` = u.`file_id`'
sql += ' INNER JOIN `sites` AS s ON s.`id` = u.`site_id`'
for site_name, file_name in self.db.execute_many(sql, 'u.`id`', subscription_ids):
try:
site = inventory.sites[site_name]
except KeyError:
continue
try:
dirs = site_dirs[site]
except KeyError:
dirs = site_dirs[site] = set()
dirs.add(os.path.dirname(file_name))
def get_entry():
for site, dirs in site_dirs.iteritems():
for directory in dirs:
yield site.id, directory
fields = ('site_id', 'directory')
if not self._read_only:
self.db.insert_many('directory_cleaning_tasks', fields, None, get_entry(), do_update = True)
def __init__(self, config = None):
CopyInterface.__init__(self, config)
self.rlfsm = RLFSM(config.get('rlfsm', None))
self.mysql = MySQL(config.reserve_db_params)
def _get_lock(self, request, valid_only=False):
sql = 'SELECT l.`id`, l.`user`, l.`dn`, s.`name`, l.`item`, l.`sites`, l.`groups`,'
sql += ' UNIX_TIMESTAMP(l.`lock_date`), UNIX_TIMESTAMP(l.`expiration_date`), l.`comment`'
sql += ' FROM `detox_locks` AS l'
sql += ' LEFT JOIN `user_services` AS s ON s.`id` = l.`service_id`'
constraints = []
args = []
user_const = -1
if 'lockid' in request:
constraints.append('l.`id` IN %s' %
MySQL.stringify_sequence(request['lockid']))
if 'user' in request:
user_const = len(constraints)
constraints.append('l.`user` IN %s' %
MySQL.stringify_sequence(request['user']))
if 'service' in request:
constraints.append('s.`name` = %s')
args.append(request['service'])
if 'item' in request:
constraints.append('l.`item` = %s')
args.append(request['item'])
if 'sites' in request:
constraints.append('l.`sites` IN %s' %
MySQL.stringify_sequence(request['sites']))
if 'groups' in request:
constraints.append('l.`groups` IN %s' %
MySQL.stringify_sequence(request['groups']))
if 'created_before' in request:
constraints.append('l.`lock_date` <= FROM_UNIXTIME(%s)')
args.append(request['created_before'])
if 'created_after' in request:
constraints.append('l.`lock_date` >= FROM_UNIXTIME(%s)')
args.append(request['created_after'])
if 'expires_before' in request:
constraints.append('l.`expiration_date` <= FROM_UNIXTIME(%s)')
args.append(request['expires_before'])
if 'expires_after' in request:
constraints.append('l.`expiration_date` >= FROM_UNIXTIME(%s)')
args.append(request['expires_after'])
if len(constraints) != 0:
sql += ' WHERE ' + ' AND '.join(constraints)
existing = []
for lock_id, user, dn, service, item, site, group, lock_date, expiration_date, comment in self.registry.db.xquery(
sql, *args):
lock = {
'lockid':
lock_id,
'user':
user,
'dn':
dn,
'item':
item,
'locked':
time.strftime('%Y-%m-%d %H:%M:%S UTC', time.gmtime(lock_date)),
'expires':
time.strftime('%Y-%m-%d %H:%M:%S UTC',
time.gmtime(expiration_date))
}
if service is not None:
lock['service'] = service
if site is not None:
lock['sites'] = site
if group is not None:
lock['groups'] = group
if comment is not None:
lock['comment'] = comment
existing.append(lock)
if valid_only or ('lockid' in request and len(existing) != 0):
return existing
sql = 'SELECT l.`id`, u.`name`, u.`dn`, s.`name`, l.`item`, l.`sites`, l.`groups`,'
sql += ' UNIX_TIMESTAMP(l.`lock_date`), UNIX_TIMESTAMP(l.`unlock_date`), UNIX_TIMESTAMP(l.`expiration_date`), l.`comment`'
sql += ' FROM `detox_locks` AS l'
sql += ' LEFT JOIN `users` AS u ON u.`id` = l.`user_id`'
sql += ' LEFT JOIN `user_services` AS s ON s.`id` = l.`service_id`'
if len(constraints) != 0:
if user_const != -1:
constraints[
user_const] = 'u.`name` IN %s' % MySQL.stringify_sequence(
request['user'])
sql += ' WHERE ' + ' AND '.join(constraints)
for lock_id, user, dn, service, item, site, group, lock_date, unlock_date, expiration_date, comment in self.history.db.xquery(
sql, *args):
lock = {
'lockid':
lock_id,
'user':
user,
'dn':
dn,
'item':
item,
'locked':
time.strftime('%Y-%m-%d %H:%M:%S UTC', time.gmtime(lock_date)),
'unlocked':
time.strftime('%Y-%m-%d %H:%M:%S UTC',
time.gmtime(unlock_date)),
'expires':
time.strftime('%Y-%m-%d %H:%M:%S UTC',
time.gmtime(expiration_date))
}
if service is not None:
lock['service'] = service
if site is not None:
lock['sites'] = site
if group is not None:
lock['groups'] = group
if comment is not None:
lock['comment'] = comment
existing.append(lock)
return existing
def get_subscriptions(self, inventory, op = None, status = None):
"""
Return a list containing Subscription and Desubscription objects ordered by the id.
@param inventory Dynamo inventory
@param op If set to 'transfer' or 'deletion', limit to the operation type.
@param status If not None, set to list of status strings to limit the query.
"""
# First convert all pre-subscriptions
self.convert_pre_subscriptions(inventory)
subscriptions = []
get_all = 'SELECT u.`id`, u.`status`, u.`delete`, f.`block_id`, f.`name`, s.`name`, u.`hold_reason` FROM `file_subscriptions` AS u'
get_all += ' INNER JOIN `files` AS f ON f.`id` = u.`file_id`'
get_all += ' INNER JOIN `sites` AS s ON s.`id` = u.`site_id`'
constraints = []
if op == 'transfer':
constraints.append('u.`delete` = 0')
elif op == 'deletion':
constraints.append('u.`delete` = 1')
if status is not None:
constraints.append('u.`status` IN ' + MySQL.stringify_sequence(status))
if len(constraints) != 0:
get_all += ' WHERE ' + ' AND '.join(constraints)
get_all += ' ORDER BY s.`id`, f.`block_id`'
get_tried_sites = 'SELECT s.`name`, f.`exitcode` FROM `failed_transfers` AS f'
get_tried_sites += ' INNER JOIN `sites` AS s ON s.`id` = f.`source_id`'
get_tried_sites += ' WHERE f.`subscription_id` = %s'
_destination_name = ''
_block_id = -1
no_source = []
all_failed = []
to_done = []
COPY = 0
DELETE = 1
for row in self.db.query(get_all):
sub_id, st, optype, block_id, file_name, site_name, hold_reason = row
if site_name != _destination_name:
_destination_name = site_name
try:
destination = inventory.sites[site_name]
except KeyError:
# Site disappeared from the inventory - weird but can happen!
destination = None
_block_id = -1
if destination is None:
continue
if block_id != _block_id:
lfile = inventory.find_file(file_name)
if lfile is None:
# Dataset, block, or file was deleted from the inventory earlier in this process (deletion not reflected in the inventory store yet)
continue
_block_id = block_id
block = lfile.block
dest_replica = block.find_replica(destination)
else:
lfile = block.find_file(file_name)
if lfile is None:
# Dataset, block, or file was deleted from the inventory earlier in this process (deletion not reflected in the inventory store yet)
continue
if dest_replica is None and st != 'cancelled':
LOG.debug('Destination replica for %s does not exist. Canceling the subscription.', file_name)
# Replica was invalidated
sql = 'UPDATE `file_subscriptions` SET `status` = \'cancelled\''
sql += ' WHERE `id` = %s'
if not self._read_only:
self.db.query(sql, sub_id)
if status is not None and 'cancelled' not in status:
# We are not asked to return cancelled subscriptions
continue
st = 'cancelled'
if optype == COPY:
disk_sources = None
tape_sources = None
failed_sources = None
if st not in ('done', 'held', 'cancelled'):
if dest_replica.has_file(lfile):
LOG.debug('%s already exists at %s', file_name, site_name)
to_done.append(sub_id)
st = 'done'
else:
disk_sources = []
tape_sources = []
for replica in block.replicas:
if replica.site == destination or replica.site.status != Site.STAT_READY:
continue
if replica.has_file(lfile):
if replica.site.storage_type == Site.TYPE_DISK:
disk_sources.append(replica.site)
elif replica.site.storage_type == Site.TYPE_MSS:
tape_sources.append(replica.site)
if len(disk_sources) + len(tape_sources) == 0:
LOG.warning('Transfer of %s to %s has no source.', file_name, site_name)
no_source.append(sub_id)
st = 'held'
if st == 'retry':
failed_sources = {}
for source_name, exitcode in self.db.query(get_tried_sites, sub_id):
try:
source = inventory.sites[source_name]
except KeyError:
# this site may have been deleted in this process
continue
try:
failed_sources[source].append(exitcode)
except KeyError:
if source not in disk_sources and source not in tape_sources:
# this is not a source site any more
continue
failed_sources[source] = [exitcode]
if len(failed_sources) == len(disk_sources) + len(tape_sources):
# transfers from all sites failed at least once
for codes in failed_sources.itervalues():
if codes[-1] not in irrecoverable_errors:
# This site failed for a recoverable reason
break
else:
# last failure from all sites due to irrecoverable errors
LOG.warning('Transfer of %s to %s failed from all sites.', file_name, site_name)
all_failed.append(sub_id)
st = 'held'
# st value may have changed - filter again
if status is None or st in status:
subscription = RLFSM.Subscription(sub_id, st, lfile, destination, disk_sources, tape_sources, failed_sources, hold_reason)
subscriptions.append(subscription)
elif optype == DELETE:
if st not in ('done', 'held', 'cancelled') and not dest_replica.has_file(lfile):
LOG.debug('%s is already gone from %s', file_name, site_name)
to_done.append(sub_id)
st = 'done'
if status is None or st in status:
desubscription = RLFSM.Desubscription(sub_id, st, lfile, destination)
subscriptions.append(desubscription)
if len(to_done) + len(no_source) + len(all_failed) != 0:
msg = 'Subscriptions terminated directly: %d done' % len(to_done)
if len(no_source) != 0:
msg += ', %d held with reason "no_source"' % len(no_source)
if len(all_failed) != 0:
msg += ', %d held with reason "all_failed"' % len(all_failed)
LOG.info(msg)
if not self._read_only:
self.db.execute_many('UPDATE `file_subscriptions` SET `status` = \'done\', `last_update` = NOW()', 'id', to_done)
self.db.execute_many('UPDATE `file_subscriptions` SET `status` = \'held\', `hold_reason` = \'no_source\', `last_update` = NOW()', 'id', no_source)
self.db.execute_many('UPDATE `file_subscriptions` SET `status` = \'held\', `hold_reason` = \'all_failed\', `last_update` = NOW()', 'id', all_failed)
# Clean up subscriptions for deleted files / sites
sql = 'DELETE FROM u USING `file_subscriptions` AS u'
sql += ' LEFT JOIN `files` AS f ON f.`id` = u.`file_id`'
sql += ' LEFT JOIN `sites` AS s ON s.`id` = u.`site_id`'
sql += ' WHERE f.`name` IS NULL OR s.`name` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `failed_transfers` AS f'
sql += ' LEFT JOIN `file_subscriptions` AS u ON u.`id` = f.`subscription_id`'
sql += ' WHERE u.`id` IS NULL'
self.db.query(sql)
return subscriptions
def __init__(self):
BaseHandler.__init__(self, 'Direct')
self._mysql = MySQL(**config.registry.db_params)
def _create_lock(self, request, user, dn):
service_id = 0
if 'service' in request:
try:
service_id = self.registry.db.query(
'SELECT `id` FROM `user_services` WHERE `name` = %s',
request['service'])[0]
except IndexError:
pass
columns = ('item', 'sites', 'groups', 'lock_date', 'expiration_date',
'user', 'dn', 'service_id', 'comment')
comment = None
if 'comment' in request:
comment = request['comment']
values = [(request['item'], None, None, MySQL.bare('NOW()'),
MySQL.bare('FROM_UNIXTIME(%d)' % request['expires']), user,
dn, service_id, comment)]
if 'sites' in request:
new_values = []
for site in request['sites']:
for v in values:
new_values.append(v[:1] + (site, ) + v[2:])
values = new_values
if 'groups' in request:
new_values = []
for group in request['groups']:
for v in values:
new_values.append(v[:2] + (group, ) + v[3:])
values = new_values
new_locks = []
for v in values:
lock_id = self.registry.db.insert_get_id('detox_locks', columns, v)
new_lock = {
'lockid':
lock_id,
'user':
user,
'dn':
dn,
'item':
request['item'],
'locked':
time.strftime('%Y-%m-%d %H:%M:%S UTC', time.gmtime()),
'expires':
time.strftime('%Y-%m-%d %H:%M:%S UTC',
time.gmtime(request['expires']))
}
if v[7] != 0:
new_lock['service'] = request['service']
if v[1] is not None:
new_lock['sites'] = v[1]
if v[2] is not None:
new_lock['groups'] = v[2]
if 'comment' in request:
new_lock['comment'] = request['comment']
new_locks.append(new_lock)
return new_locks
class RegistryDatabase(object):
"""
Similar to HistoryDatabase, this is just one abstraction layer that doesn't really hide the
backend technology for the registry. We still have the benefit of being able to use default
parameters to initialize the registry database handle.
"""
# default configuration
_config = Configuration()
@staticmethod
def set_default(config):
RegistryDatabase._config = Configuration(config)
def __init__(self, config=None):
if config is None:
config = RegistryDatabase._config
self.db = MySQL(config.db_params)
self.set_read_only(config.get('read_only', False))
def set_read_only(self, value=True):
self._read_only = True
def get_locked_apps(self):
sql = 'SELECT DISTINCT `application` FROM `activity_lock`'
return self.db.query(sql)
def get_app_lock(self, app):
# this function can be called within a table lock, so we need to lock what we use
self.db.lock_tables(read=[('activity_lock', 'l'), ('user_services',
's')])
sql = 'SELECT l.`user`, s.`name`, UNIX_TIMESTAMP(l.`timestamp`), l.`note` FROM `activity_lock` AS l'
sql += ' LEFT JOIN `user_services` AS s ON s.`id` = l.`service_id`'
sql += ' WHERE l.`application` = %s ORDER BY l.`timestamp` ASC'
lock_data = self.db.query(sql, app)
self.db.unlock_tables()
if len(lock_data) == 0:
return None, None, None, None, 0
first_user, first_service, lock_time, note = lock_data[0]
depth = 1
for user, service, _, _ in lock_data[1:]:
if user == first_user and service == first_service:
depth += 1
return first_user, first_service, lock_time, note, depth
def lock_app(self, app, user, service=None, note=None):
if service is None:
service_id = 0
else:
try:
sql = 'SELECT `id` FROM `user_services` WHERE `name` = %s'
service_id = self.db.query(sql, service)[0]
except IndexError:
service_id = 0
sql = 'INSERT INTO `activity_lock` (`user`, `service_id`, `application`, `timestamp`, `note`)'
sql += ' VALUES (%s, %s, %s, NOW(), %s)'
self.db.query(sql, user, service_id, app, note)
def unlock_app(self, app, user, service=None):
if service is None:
service_id = 0
else:
try:
sql = 'SELECT `id` FROM `user_services` WHERE `name` = %s'
service_id = self.db.query(sql, service)[0]
except IndexError:
service_id = 0
self.db.lock_tables(write=['activity_lock', ('activity_lock', 'l')])
sql = 'DELETE FROM `activity_lock` WHERE `id` = ('
sql += ' SELECT m FROM ('
sql += ' SELECT MAX(`id`) m FROM `activity_lock` AS l'
sql += ' WHERE `user` = %s AND `service_id` = %s AND `application` = %s'
sql += ' ) AS tmp'
sql += ')'
self.db.query(sql, user, service_id, app)
# a little cleanup
if self.db.query('SELECT COUNT(*) FROM `activity_lock`')[0] == 0:
self.db.query('ALTER TABLE `activity_lock` AUTO_INCREMENT = 1')
self.db.unlock_tables()
class RLFSMPhEDExReserveDeletionInterface(DeletionInterface):
"""
DeletionInterface using the Dynamo RLFSM.
"""
def __init__(self, config=None):
DeletionInterface.__init__(self, config)
self.rlfsm = RLFSM(config.get('rlfsm', None))
self.mysql = MySQL(config.reserve_db_params)
def set_read_only(self, value=True): #override
self._read_only = value
self.rlfsm.set_read_only(value)
def schedule_deletions(self,
replica_list,
operation_id,
comments=''): #override
sites = set(r.site for r, b in replica_list)
if len(sites) != 1:
raise OperationalError(
'schedule_deletions should be called with a list of replicas at a single site.'
)
site = list(sites)[0]
LOG.info(
'Scheduling deletion of %d replicas from %s using RLFSM (operation %d)',
len(replica_list), site.name, operation_id)
clones = []
for dataset_replica, block_replicas in replica_list:
if block_replicas is None:
to_delete = dataset_replica.block_replicas
else:
to_delete = block_replicas
for block_replica in to_delete:
for lfile in block_replica.files():
self.rlfsm.desubscribe_file(block_replica.site, lfile)
# No external dependency -> all operations are successful
clone_replica = DatasetReplica(dataset_replica.dataset,
dataset_replica.site)
clone_replica.copy(dataset_replica)
if block_replicas is None:
clones.append((clone_replica, None))
else:
clones.append((clone_replica, []))
for block_replica in block_replicas:
clone_block_replica = BlockReplica(block_replica.block,
block_replica.site,
block_replica.group)
clone_block_replica.copy(block_replica)
clone_block_replica.last_update = int(time.time())
clones[-1][1].append(clone_block_replica)
if not self._read_only:
for clone_replica, block_replicas in clones:
if block_replicas is None:
self.mysql.query(
'INSERT INTO `phedex_deletion_reservations` (`operation_id`, `item`, `site`) VALUES (%s, %s, %s)',
operation_id, clone_replica.dataset.name,
clone_replica.site.name)
else:
for block_replica in block_replicas:
self.mysql.query(
'INSERT INTO `phedex_deletion_reservations` (`operation_id`, `item`, `site`) VALUES (%s, %s, %s)',
operation_id, block_replica.block.full_name(),
clone_replica.site.name)
return clones
def deletion_status(self, operation_id): #override
raise NotImplementedError('deletion_status')
def save_policy(self, policy_text):
md5 = hashlib.md5(policy_text).hexdigest()
result = self.db.query('SELECT `id`, `text` FROM `deletion_policies` WHERE `hash` = UNHEX(%s)', md5)
for policy_id, text in result:
if text == policy_text:
return policy_id
# no row with matching hash or no row with matching text although hash matches (basically impossible)
# new policy
columns = ('hash', 'text')
return self.db.insert_get_id('deletion_policies', columns = columns, values = (MySQL.bare('UNHEX(\'%s\')' % md5), policy_text))
def _update_status(self, optype):
if optype == 'transfer':
site_columns = 'ss.`name`, sd.`name`'
site_joins = ' INNER JOIN `sites` AS ss ON ss.`id` = q.`source_id`'
site_joins += ' INNER JOIN `sites` AS sd ON sd.`id` = u.`site_id`'
else:
site_columns = 's.`name`'
site_joins = ' INNER JOIN `sites` AS s ON s.`id` = u.`site_id`'
get_task_data = 'SELECT u.`id`, f.`name`, f.`size`, UNIX_TIMESTAMP(q.`created`), ' + site_columns + ' FROM `{op}_tasks` AS q'
get_task_data += ' INNER JOIN `file_subscriptions` AS u ON u.`id` = q.`subscription_id`'
get_task_data += ' INNER JOIN `files` AS f ON f.`id` = u.`file_id`'
get_task_data += site_joins
get_task_data += ' WHERE q.`id` = %s'
get_task_data = get_task_data.format(op = optype)
if optype == 'transfer':
history_table_name = 'file_transfers'
history_site_fields = ('source_id', 'destination_id')
else:
history_table_name = 'file_deletions'
history_site_fields = ('site_id',)
history_fields = ('file_id', 'exitcode', 'message', 'batch_id', 'created', 'started', 'finished', 'completed') + history_site_fields
if optype == 'transfer':
insert_failure = 'INSERT INTO `failed_transfers` (`id`, `subscription_id`, `source_id`, `exitcode`)'
insert_failure += ' SELECT `id`, `subscription_id`, `source_id`, %s FROM `transfer_tasks` WHERE `id` = %s'
insert_failure += ' ON DUPLICATE KEY UPDATE `id`=VALUES(`id`)'
delete_failures = 'DELETE FROM `failed_transfers` WHERE `subscription_id` = %s'
get_subscription_status = 'SELECT `status` FROM `file_subscriptions` WHERE `id` = %s'
update_subscription = 'UPDATE `file_subscriptions` SET `status` = %s, `last_update` = NOW() WHERE `id` = %s'
delete_subscription = 'DELETE FROM `file_subscriptions` WHERE `id` = %s'
delete_task = 'DELETE FROM `{op}_tasks` WHERE `id` = %s'.format(op = optype)
delete_batch = 'DELETE FROM `{op}_batches` WHERE `id` = %s'.format(op = optype)
done_subscriptions = []
num_success = 0
num_failure = 0
num_cancelled = 0
# Collect completed tasks
for batch_id in self.db.query('SELECT `id` FROM `{op}_batches`'.format(op = optype)):
results = []
if optype == 'transfer':
for _, query in self.transfer_queries:
results = query.get_transfer_status(batch_id)
if len(results) != 0:
break
else:
for _, query in self.deletion_queries:
results = query.get_deletion_status(batch_id)
if len(results) != 0:
break
batch_complete = True
for task_id, status, exitcode, message, start_time, finish_time in results:
# start_time and finish_time can be None
LOG.debug('%s result: %d %s %d %s %s', optype, task_id, FileQuery.status_name(status), exitcode, start_time, finish_time)
if status == FileQuery.STAT_DONE:
num_success += 1
elif status == FileQuery.STAT_FAILED:
num_failure += 1
elif status == FileQuery.STAT_CANCELLED:
num_cancelled += 1
else:
batch_complete = False
continue
try:
task_data = self.db.query(get_task_data, task_id)[0]
except IndexError:
LOG.warning('%s task %d got lost.', optype, task_id)
if optype == 'transfer':
query.forget_transfer_status(task_id)
else:
query.forget_deletion_status(task_id)
if not self._read_only:
self.db.query(delete_task, task_id)
continue
subscription_id, lfn, size, create_time = task_data[:4]
if optype == 'transfer':
source_name, dest_name = task_data[4:]
history_site_ids = (
self.history_db.save_sites([source_name], get_ids = True)[0],
self.history_db.save_sites([dest_name], get_ids = True)[0]
)
else:
site_name = task_data[4]
history_site_ids = (self.history_db.save_sites([site_name], get_ids = True)[0],)
file_id = self.history_db.save_files([(lfn, size)], get_ids = True)[0]
if start_time is None:
sql_start_time = None
else:
sql_start_time = datetime.datetime(*time.localtime(start_time)[:6])
if finish_time is None:
sql_finish_time = None
else:
sql_finish_time = datetime.datetime(*time.localtime(finish_time)[:6])
values = (file_id, exitcode, message, batch_id, datetime.datetime(*time.localtime(create_time)[:6]),
sql_start_time, sql_finish_time, MySQL.bare('NOW()')) + history_site_ids
if optype == 'transfer':
LOG.debug('Archiving transfer of %s from %s to %s (exitcode %d)', lfn, source_name, dest_name, exitcode)
else:
LOG.debug('Archiving deletion of %s at %s (exitcode %d)', lfn, site_name, exitcode)
if self._read_only:
history_id = 0
else:
history_id = self.history_db.db.insert_get_id(history_table_name, history_fields, values)
if optype == 'transfer':
query.write_transfer_history(self.history_db, task_id, history_id)
else:
query.write_deletion_history(self.history_db, task_id, history_id)
# We check the subscription status and update accordingly. Need to lock the tables.
if not self._read_only:
self.db.lock_tables(write = ['file_subscriptions'])
try:
subscription_status = self.db.query(get_subscription_status, subscription_id)[0]
if subscription_status == 'inbatch':
if status == FileQuery.STAT_DONE:
LOG.debug('Subscription %d done.', subscription_id)
if not self._read_only:
self.db.query(update_subscription, 'done', subscription_id)
elif status == FileQuery.STAT_FAILED:
LOG.debug('Subscription %d failed (exit code %d). Flagging retry.', subscription_id, exitcode)
if not self._read_only:
self.db.query(update_subscription, 'retry', subscription_id)
elif subscription_status == 'cancelled':
# subscription is cancelled and task terminated -> delete the subscription now, irrespective of the task status
LOG.debug('Subscription %d is cancelled.', subscription_id)
if not self._read_only:
self.db.query(delete_subscription, subscription_id)
finally:
if not self._read_only:
self.db.unlock_tables()
if not self._read_only:
if optype == 'transfer':
if subscription_status == 'cancelled' or (subscription_status == 'inbatch' and status == FileQuery.STAT_DONE):
# Delete entries from failed_transfers table
self.db.query(delete_failures, subscription_id)
elif subscription_status == 'inbatch' and status == FileQuery.STAT_FAILED:
# Insert entry to failed_transfers table
self.db.query(insert_failure, exitcode, task_id)
self.db.query(delete_task, task_id)
if status == FileQuery.STAT_DONE:
done_subscriptions.append(subscription_id)
if optype == 'transfer':
query.forget_transfer_status(task_id)
else:
query.forget_deletion_status(task_id)
if self.cycle_stop.is_set():
break
if batch_complete:
if not self._read_only:
self.db.query(delete_batch, batch_id)
if optype == 'transfer':
query.forget_transfer_batch(batch_id)
else:
query.forget_deletion_batch(batch_id)
if num_success + num_failure + num_cancelled != 0:
LOG.info('Archived file %s: %d succeeded, %d failed, %d cancelled.', optype, num_success, num_failure, num_cancelled)
else:
LOG.debug('Archived file %s: %d succeeded, %d failed, %d cancelled.', optype, num_success, num_failure, num_cancelled)
return done_subscriptions
class FTSFileOperation(FileTransferOperation, FileTransferQuery, FileDeletionOperation, FileDeletionQuery):
def __init__(self, config):
FileTransferOperation.__init__(self, config)
FileTransferQuery.__init__(self, config)
FileDeletionOperation.__init__(self, config)
FileDeletionQuery.__init__(self, config)
self.server_url = config.fts_server
self.server_id = 0 # server id in the DB
# Parameter "retry" for fts3.new_job. 0 = server default
self.fts_retry = config.get('fts_retry', 0)
# String passed to fts3.new_*_job(metadata = _)
self.metadata_string = config.get('metadata_string', 'Dynamo')
# Proxy to be forwarded to FTS
self.x509proxy = config.get('x509proxy', None)
self.x509proxy_orig = config.get('x509proxy', None)
# Bookkeeping device
self.db = MySQL(config.db_params)
# Reuse the context object
self.keep_context = config.get('keep_context', False)
self._context = None
def num_pending_transfers(self): #override
# Check the number of files in queue
# We first thought about counting files with /files, but FTS seems to return only 1000 maximum even when "limit" is set much larger
#files = self._ftscallurl('/files?state_in=ACTIVE,SUBMITTED,READY&limit=%d' % self.max_pending_transfers)
#return len(files)
num_pending = 0
file_states = ['SUBMITTED', 'READY', 'ACTIVE', 'STAGING', 'STARTED']
jobs = self._ftscall('list_jobs', state_in = ['SUBMITTED', 'ACTIVE', 'STAGING'])
from random import shuffle
shuffle(jobs)
total_count = 0
for job in jobs:
total_count = total_count + 1
#LOG.info("List_files call 1")
job_info = self._ftscall('get_job_status', job['job_id'], list_files = True)
for file_info in job_info['files']:
if file_info['file_state'] in file_states:
num_pending += 1
if num_pending == self.max_pending_transfers + 1:
# don't need to query more
return num_pending
return num_pending
def num_pending_deletions(self): #override
# See above
#files = self._ftscallurl('/files?state_in=ACTIVE,SUBMITTED,READY&limit=%d' % self.max_pending_deletions)
#return len(files)
num_pending = 0
file_states = ['SUBMITTED', 'READY', 'ACTIVE']
jobs = self._ftscall('list_jobs', state_in = ['SUBMITTED', 'ACTIVE'])
from random import shuffle
shuffle(jobs)
total_count = 0
for job in jobs:
total_count = total_count + 1
#LOG.info("List_files call 2")
job_info = self._ftscall('get_job_status', job['job_id'], list_files = True)
for file_info in job_info['dm']:
if file_info['file_state'] in file_states:
num_pending += 1
if num_pending == self.max_pending_deletions + 1:
# don't need to query more
return num_pending
return num_pending
def form_batches(self, tasks): #override
if len(tasks) == 0:
return []
# FTS3 has no restriction on how to group the transfers, but cannot apparently take thousands
# of tasks at once
batches = [[]]
for task in tasks:
batches[-1].append(task)
if len(batches[-1]) == self.batch_size:
batches.append([])
return batches
def start_transfers(self, batch_id, batch_tasks): #override
result = {}
stage_files = []
transfers = []
s_pfn_to_task = {}
t_pfn_to_task = {}
for task in batch_tasks:
sub = task.subscription
lfn = sub.file.lfn
dest_pfn = sub.destination.to_pfn(lfn, 'gfal2')
source_pfn = task.source.to_pfn(lfn, 'gfal2')
self.x509proxy = sub.destination.x509proxy
if task.source.storage_type == Site.TYPE_MSS:
self.x509proxy = task.source.x509proxy
if dest_pfn is None or source_pfn is None:
# either gfal2 is not supported or lfn could not be mapped
LOG.warning('Could not obtain PFN for %s at %s or %s', lfn, sub.destination.name, task.source.name)
result[task] = False
continue
if self.checksum_algorithm:
checksum = '%s:%s' % (self.checksum_algorithm, str(sub.file.checksum[self.checksum_index]))
verify_checksum = 'target'
else:
checksum = None
verify_checksum = False
if task.source.storage_type == Site.TYPE_MSS:
LOG.debug('Staging %s at %s', lfn, task.source.name)
# need to stage first
stage_files.append((source_pfn, dest_pfn, checksum, sub.file.size))
# task identified by the source PFN
s_pfn_to_task[source_pfn] = task
else:
LOG.info("Here we are")
LOG.info('Submitting transfer of %s from %s to %s to FTS', lfn, task.source.name, sub.destination.name)
transfers.append(fts3.new_transfer(source_pfn, dest_pfn, checksum = checksum, filesize = sub.file.size))
# there should be only one task per destination pfn
t_pfn_to_task[dest_pfn] = task
if len(stage_files) != 0:
LOG.debug('Submit new staging job for %d files', len(stage_files))
job = fts3.new_staging_job([ff[0] for ff in stage_files], bring_online = 36000, metadata = self.metadata_string)
success = self._submit_job(job, 'staging', batch_id, dict((pfn, task.id) for pfn, task in s_pfn_to_task.iteritems()), x509=task.source.x509proxy)
for source_pfn, _, _, _ in stage_files:
result[s_pfn_to_task[source_pfn]] = success
if success and not self._read_only:
LOG.debug('Recording staging queue')
fields = ('id', 'source', 'destination', 'checksum', 'size')
mapping = lambda ff: (s_pfn_to_task[ff[0]].id,) + ff
if not self._read_only:
self.db.insert_many('fts_staging_queue', fields, mapping, stage_files)
if len(transfers) != 0:
LOG.debug('Submit new transfer job for %d files', len(transfers))
LOG.info("Submitting transfer job from disk to site %s with proxy %s." % (sub.destination.name, sub.destination.x509proxy))
job = fts3.new_job(transfers, retry = self.fts_retry, overwrite = True,
verify_checksum = verify_checksum, metadata = self.metadata_string)
success = self._submit_job(job, 'transfer', batch_id, dict((pfn, task.id) for pfn, task in t_pfn_to_task.iteritems()), x509=sub.destination.x509proxy)
for transfer in transfers:
dest_pfn = transfer['destinations'][0]
result[t_pfn_to_task[dest_pfn]] = success
return result
def start_deletions(self, batch_id, batch_tasks): #override
result = {}
pfn_to_task = {}
for task in batch_tasks:
desub = task.desubscription
lfn = desub.file.lfn
pfn = desub.site.to_pfn(lfn, 'gfal2')
if pfn is None:
# either gfal2 is not supported or lfn could not be mapped
result[task] = False
continue
# there should be only one task per destination pfn
pfn_to_task[pfn] = task
job = fts3.new_delete_job(pfn_to_task.keys(), metadata = self.metadata_string)
success = self._submit_job(job, 'deletion', batch_id, dict((pfn, task.id) for pfn, task in pfn_to_task.iteritems()))
for task in pfn_to_task.itervalues():
result[task] = success
return result
def cancel_transfers(self, task_ids): #override
return self._cancel(task_ids, 'transfer')
def cancel_deletions(self, task_ids): #override
return self._cancel(task_ids, 'deletion')
def cleanup(self): #override
sql = 'DELETE FROM f USING `fts_transfer_tasks` AS f'
sql += ' LEFT JOIN `transfer_tasks` AS t ON t.`id` = f.`id`'
sql += ' LEFT JOIN `fts_transfer_batches` AS b ON b.`id` = f.`fts_batch_id`'
sql += ' WHERE t.`id` IS NULL OR b.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `fts_staging_queue` AS f'
sql += ' LEFT JOIN `fts_transfer_tasks` AS t ON t.`id` = f.`id`'
sql += ' WHERE t.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `fts_deletion_tasks` AS f'
sql += ' LEFT JOIN `deletion_tasks` AS t ON t.`id` = f.`id`'
sql += ' LEFT JOIN `fts_deletion_batches` AS b ON b.`id` = f.`fts_batch_id`'
sql += ' WHERE t.`id` IS NULL OR b.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `fts_transfer_batches` AS f'
sql += ' LEFT JOIN `transfer_batches` AS t ON t.`id` = f.`batch_id`'
sql += ' WHERE t.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM f USING `fts_deletion_batches` AS f'
sql += ' LEFT JOIN `deletion_batches` AS t ON t.`id` = f.`batch_id`'
sql += ' WHERE t.`id` IS NULL'
self.db.query(sql)
# Delete the source tasks - caution: wipes out all tasks when switching the operation backend
sql = 'DELETE FROM t USING `transfer_tasks` AS t'
sql += ' LEFT JOIN `fts_transfer_tasks` AS f ON f.`id` = t.`id`'
sql += ' WHERE f.`id` IS NULL'
self.db.query(sql)
sql = 'DELETE FROM t USING `deletion_tasks` AS t'
sql += ' LEFT JOIN `fts_deletion_tasks` AS f ON f.`id` = t.`id`'
sql += ' WHERE f.`id` IS NULL'
self.db.query(sql)
def get_transfer_status(self, batch_id): #override
if self.server_id == 0:
self._set_server_id()
results = self._get_status(batch_id, 'transfer')
staged_tasks = []
for task_id, status, exitcode, msg, start_time, finish_time in self._get_status(batch_id, 'staging'):
if status == FileQuery.STAT_DONE:
staged_tasks.append(task_id)
results.append((task_id, FileQuery.STAT_QUEUED, -1, None, None, None))
else:
# these tasks won't appear in results from _get_status('transfer')
# because no transfer jobs have been submitted yet
results.append((task_id, status, exitcode, None, start_time, finish_time))
if len(staged_tasks) != 0:
if self.checksum_algorithm:
verify_checksum = 'target'
else:
verify_checksum = None
which_dest = ""
transfers = []
pfn_to_tid = {}
for task_id, source_pfn, dest_pfn, checksum, filesize in self.db.select_many('fts_staging_queue', ('id', 'source', 'destination', 'checksum', 'size'), 'id', staged_tasks):
for s in inventory.sites.itervalues():
if s.backend in dest_pfn and s.backend != "":
which_dest = s
#transfers = []
#pfn_to_tid = {}
transfers.append(fts3.new_transfer(source_pfn, dest_pfn, checksum = checksum, filesize = filesize))
pfn_to_tid[dest_pfn] = task_id
job = fts3.new_job(transfers, retry = self.fts_retry, overwrite = True, verify_checksum = verify_checksum, metadata = self.metadata_string)
#which_dest = ""
#for s in inventory.sites.itervalues():
# if s.backend in dest_pfn and s.backend != "":
# which_dest = s
LOG.info("Submitting job from buffer to site %s with proxy %s." % (which_dest.name, which_dest.x509proxy))
#LOG.info("dest_pfn: %s" % dest_pfn)
success = self._submit_job(job, 'transfer', batch_id, pfn_to_tid, x509=which_dest.x509proxy)
if success and not self._read_only:
self.db.delete_many('fts_staging_queue', 'id', pfn_to_tid.values())
return results
def get_deletion_status(self, batch_id): #override
if self.server_id == 0:
self._set_server_id()
return self._get_status(batch_id, 'deletion')
def write_transfer_history(self, history_db, task_id, history_id): #override
self._write_history(history_db, task_id, history_id, 'transfer')
def write_deletion_history(self, history_db, task_id, history_id): #override
self._write_history(history_db, task_id, history_id, 'deletion')
def forget_transfer_status(self, task_id): #override
return self._forget_status(task_id, 'transfer')
def forget_deletion_status(self, task_id): #override
return self._forget_status(task_id, 'deletion')
def forget_transfer_batch(self, task_id): #override
return self._forget_batch(task_id, 'transfer')
def forget_deletion_batch(self, task_id): #override
return self._forget_batch(task_id, 'deletion')
def _ftscall(self, method, *args, **kwd):
return self._do_ftscall(binding = (method, args, kwd))
def _ftscallurl(self, url):
# Call to FTS URLs that don't have python bindings
return self._do_ftscall(url = url)
def _do_ftscall(self, binding = None, url = None):
proxy = self.x509proxy
if binding is not None:
method, args, kwd = binding
for k in kwd.iteritems():
LOG.info(k)
if k[0] == "ucert":
LOG.info("Setting proxy to %s" % k[1])
proxy = k[1]
if self._context is None:
# request_class = Request -> use "requests"-based https call (instead of default PyCURL,
# which may not be able to handle proxy certificates depending on the cURL installation)
# verify = False -> do not verify the server certificate
LOG.info("Setting context with proxy %s" % proxy)
context = fts3.Context(self.server_url, ucert = proxy, ukey = proxy,
request_class = Request, verify = False)
if self.keep_context:
self._context = context
else:
context = self._context
if binding is not None:
reqstring = binding[0]
else:
reqstring = url
LOG.debug('FTS: %s', reqstring)
wait_time = 1.
for attempt in xrange(10):
try:
if binding is not None:
method, args, kwd = binding
if "ucert" in kwd:
del kwd["ucert"]
if "ukey" in kwd:
del kwd["ukey"]
return getattr(fts3, method)(context, *args, **kwd)
else:
return json.loads(context.get(url))
except fts_exceptions.ServerError as exc:
if str(exc.reason) == '500':
# Internal server error - let's try again
pass
except fts_exceptions.TryAgain:
pass
time.sleep(wait_time)
wait_time *= 1.5
LOG.error('Failed to communicate with FTS server: %s', reqstring)
raise RuntimeError('Failed to communicate with FTS server: %s' % reqstring)
def _submit_job(self, job, optype, batch_id, pfn_to_tid, x509=None):
if self._read_only:
job_id = 'test'
else:
try:
if x509 is not None:
job_id = self._ftscall('submit', job, ucert=x509, ukey=x509)
else:
job_id = self._ftscall('submit', job)
except:
exc_type, exc, tb = sys.exc_info()
LOG.error('Failed to submit %s to FTS: Exception %s (%s)', optype, exc_type.__name__, str(exc))
return False
# list of file-level operations (one-to-one with pfn)
try:
if optype == 'transfer' or optype == 'staging':
key = 'files'
else:
key = 'dm'
#LOG.info("List_files call 3")
fts_files = self._ftscall('get_job_status', job_id = job_id, list_files = True)[key]
except:
exc_type, exc, tb = sys.exc_info()
LOG.error('Failed to get status of job %s from FTS: Exception %s (%s)', job_id, exc_type.__name__, str(exc))
return False
if self.server_id == 0:
self._set_server_id()
if optype == 'transfer' or optype == 'staging':
table_name = 'fts_transfer_batches'
columns = ('batch_id', 'task_type', 'fts_server_id', 'job_id')
values = (batch_id, optype, self.server_id, job_id)
else:
table_name = 'fts_deletion_batches'
columns = ('batch_id', 'fts_server_id', 'job_id')
values = (batch_id, self.server_id, job_id)
if not self._read_only:
fts_batch_id = self.db.insert_get_id(table_name, columns = columns, values = values)
if optype == 'transfer' or optype == 'staging':
table_name = 'fts_transfer_tasks'
pfn_key = 'dest_surl'
else:
table_name = 'fts_deletion_tasks'
pfn_key = 'source_surl'
fields = ('id', 'fts_batch_id', 'fts_file_id')
mapping = lambda f: (pfn_to_tid[f[pfn_key]], fts_batch_id, f['file_id'])
if not self._read_only:
self.db.insert_many(table_name, fields, mapping, fts_files, do_update = True, update_columns = ('fts_batch_id', 'fts_file_id'))
return True
def _cancel(self, task_ids, optype):
sql = 'SELECT b.`job_id`, f.`fts_file_id` FROM `fts_{op}_tasks` AS f'
sql += ' INNER JOIN `fts_{op}_batches` AS b ON b.`id` = f.`fts_batch_id`'
result = self.db.execute_many(sql.format(op = optype), MySQL.bare('f.`id`'), task_ids)
by_job = collections.defaultdict(list)
for job_id, file_id in result:
by_job[job_id].append(file_id)
if not self._read_only:
for job_id, ids in by_job.iteritems():
try:
self._ftscall('cancel', job_id, file_ids = ids)
except:
LOG.error('Failed to cancel FTS job %s', job_id)
def _get_status(self, batch_id, optype):
if optype == 'transfer' or optype == 'staging':
sql = 'SELECT `id`, `job_id` FROM `fts_transfer_batches`'
sql += ' WHERE `task_type` = %s AND `fts_server_id` = %s AND `batch_id` = %s'
batch_data = self.db.query(sql, optype, self.server_id, batch_id)
task_table_name = 'fts_transfer_tasks'
else:
sql = 'SELECT `id`, `job_id` FROM `fts_deletion_batches`'
sql += ' WHERE `fts_server_id` = %s AND `batch_id` = %s'
batch_data = self.db.query(sql, self.server_id, batch_id)
task_table_name = 'fts_deletion_tasks'
message_pattern = re.compile('(?:DESTINATION|SOURCE|TRANSFER|DELETION) \[([0-9]+)\] (.*)')
results = []
for fts_batch_id, job_id in batch_data:
LOG.debug('Checking status of FTS %s batch %s', optype, job_id)
sql = 'SELECT `fts_file_id`, `id` FROM `{table}` WHERE `fts_batch_id` = %s'.format(table = task_table_name)
fts_to_task = dict(self.db.xquery(sql, fts_batch_id))
try:
#LOG.info("List_files call 4")
result = self._ftscall('get_job_status', job_id = job_id, list_files = True)
except:
LOG.error('Failed to get job status for FTS job %s', job_id)
LOG.error(optype)
continue
if optype == 'transfer' or optype == 'staging':
fts_files = result['files']
else:
fts_files = result['dm']
for fts_file in fts_files:
try:
task_id = fts_to_task[fts_file['file_id']]
except KeyError:
continue
state = fts_file['file_state']
exitcode = -1
start_time = None
finish_time = None
get_time = False
try:
message = fts_file['reason']
except KeyError:
message = None
if message is not None:
# Check if reason follows a known format (from which we can get the exit code)
matches = message_pattern.match(message)
if matches is not None:
exitcode = int(matches.group(1))
message = matches.group(2)
# Additionally, if the message is a known one, convert the exit code
c = find_msg_code(message)
if c is not None:
exitcode = c
# HDFS site with gridftp-hdfs gives a I/O error (500) when the file is not there
if optype == 'deletion' and 'Input/output error' in message:
exitcode = errno.ENOENT
if state == 'FINISHED':
status = FileQuery.STAT_DONE
exitcode = 0
get_time = True
elif state == 'FAILED':
status = FileQuery.STAT_FAILED
get_time = True
elif state == 'CANCELED':
status = FileQuery.STAT_CANCELLED
get_time = True
elif state == 'SUBMITTED':
status = FileQuery.STAT_NEW
else:
status = FileQuery.STAT_QUEUED
if optype == 'transfer' and exitcode == errno.EEXIST:
# Transfer + destination exists -> not an error
status = FileQuery.STAT_DONE
exitcode = 0
elif optype == 'deletion' and exitcode == errno.ENOENT:
# Deletion + destination does not exist -> not an error
status = FileQuery.STAT_DONE
exitcode = 0
if get_time:
try:
start_time = calendar.timegm(time.strptime(fts_file['start_time'], '%Y-%m-%dT%H:%M:%S'))
except TypeError: # start time is NULL (can happen when the job is cancelled)
start_time = None
try:
finish_time = calendar.timegm(time.strptime(fts_file['finish_time'], '%Y-%m-%dT%H:%M:%S'))
except TypeError:
start_time = None
LOG.debug('%s %d: %s, %d, %s, %s, %s', optype, task_id, FileQuery.status_name(status), exitcode, message, start_time, finish_time)
results.append((task_id, status, exitcode, message, start_time, finish_time))
return results
def _write_history(self, history_db, task_id, history_id, optype):
if not self._read_only:
history_db.db.insert_update('fts_servers', ('url',), self.server_url)
try:
server_id = history_db.db.query('SELECT `id` FROM `fts_servers` WHERE `url` = %s', self.server_url)[0]
except IndexError:
server_id = 0
sql = 'SELECT b.`job_id`, t.`fts_file_id` FROM `fts_{op}_tasks` AS t'
sql += ' INNER JOIN `fts_{op}_batches` AS b ON b.`id` = t.`fts_batch_id`'
sql += ' WHERE t.`id` = %s'
try:
fts_job_id, fts_file_id = self.db.query(sql.format(op = optype), task_id)[0]
except IndexError:
return
if not self._read_only:
history_db.db.insert_update('fts_batches', ('fts_server_id', 'job_id'), server_id, fts_job_id)
batch_id = history_db.db.query('SELECT `id` FROM `fts_batches` WHERE `fts_server_id` = %s AND `job_id` = %s', server_id, fts_job_id)[0]
history_db.db.insert_update('fts_file_{op}s'.format(op = optype), ('id', 'fts_batch_id', 'fts_file_id'), history_id, batch_id, fts_file_id)
def _forget_status(self, task_id, optype):
if self._read_only:
return
sql = 'DELETE FROM `fts_{optype}_tasks` WHERE `id` = %s'.format(optype = optype)
self.db.query(sql, task_id)
def _forget_batch(self, batch_id, optype):
if self._read_only:
return
sql = 'DELETE FROM `fts_{optype}_batches` WHERE `batch_id` = %s'.format(optype = optype)
self.db.query(sql, batch_id)
def _set_server_id(self):
if not self._read_only:
self.db.query('INSERT INTO `fts_servers` (`url`) VALUES (%s) ON DUPLICATE KEY UPDATE `url`=VALUES(`url`)', self.server_url)
result = self.db.query('SELECT `id` FROM `fts_servers` WHERE `url` = %s', self.server_url)
if len(result) == 0:
self.server_id = 0
else:
self.server_id = result[0]
def __init__(self, config = None):
if config is None:
config = RLFSM._config
# Handle to the inventory DB
self.db = MySQL(config.db.db_params)
# Handle to the history DB
self.history_db = HistoryDatabase(config.get('history', None))
# FileTransferOperation backend (can make it a map from (source, dest) to operator)
self.transfer_operations = []
if 'transfer' in config:
for condition_text, module, conf in config.transfer:
if condition_text is None: # default
condition = None
else:
condition = Condition(condition_text, site_variables)
self.transfer_operations.append((condition, FileTransferOperation.get_instance(module, conf)))
if 'transfer_query' in config:
self.transfer_queries = []
for condition_text, module, conf in config.transfer_query:
if condition_text is None: # default
condition = None
else:
condition = Condition(condition_text, site_variables)
self.transfer_queries.append(condition, FileTransferQuery.get_instance(module, conf))
else:
self.transfer_queries = self.transfer_operations
if 'deletion' in config:
self.deletion_operations = []
for condition_text, module, conf in config.deletion:
if condition_text is None: # default
condition = None
else:
condition = Condition(condition_text, site_variables)
self.deletion_operations.append(condition, FileDeletionOperation.get_instance(module, conf))
else:
self.deletion_operations = self.transfer_operations
if 'deletion_query' in config:
self.deletion_queries = []
for condition_text, module, conf in config.deletion_query:
if condition_text is None: # default
condition = None
else:
condition = Condition(condition_text, site_variables)
self.deletion_queries.append(condition, FileDeletionQuery.get_instance(module, conf))
else:
self.deletion_queries = self.deletion_operations
self.sites_in_downtime = []
# Cycle thread
self.main_cycle = None
self.cycle_stop = threading.Event()
self.set_read_only(config.get('read_only', False))
class DirectRequestsHandler(BaseHandler):
"""
Create dataset transfer proposals from direct user requests.
"""
def __init__(self):
BaseHandler.__init__(self, 'Direct')
self._mysql = MySQL(**config.registry.db_params)
def release_requests(self, table, reqs2delete):
array = []
for did, site in reqs2delete:
array.append((did, site, 'copy'))
self._mysql.delete_many(table, ('item', 'site', 'reqtype'), array)
def get_requests(self, inventory, policy): # override
self._mysql.query("LOCK TABLES `requests` WRITE")
try:
self._get_requests(inventory, policy)
finally:
self._mysql.query("UNLOCK TABLES")
def _get_requests(self, inventory, policy):
requests = {}
newRequests = {}
reqs2delete = []
unif2delete = []
reqs = self._mysql.query(
"SELECT `reqid`, `item`, `site`, `rank`, `status`, `created` FROM `requests_unified`"
)
for reqid, dset, target, rank, status, create_datetime in reqs:
reqtime = int(time.mktime(create_datetime.timetuple()))
request = UserRequest(dset, target, reqtime, True)
request.reqid = reqid
request.nrequests = rank
request.status = status
requests[(dset, target)] = request
reps = inventory.datasets[dset].replicas
fullreps = [i for i in reps if i.is_complete()]
if len([i for i in fullreps if i.site.name == target]) != 0:
logger.debug(dset)
logger.debug(" request already done, trash it")
unif2delete.append((dset, target))
reqs = self._mysql.query(
"SELECT `item`, `site`, `reqtype`, `created` FROM `requests`")
for dset, target, reqtype, create_datetime in reqs:
if create_datetime != None:
reqtime = int(time.mktime(create_datetime.timetuple()))
else:
reqtime = int(time.time())
#we only deal with copy requests here
if reqtype != 'copy':
logger.debug(dset)
logger.debug(" ignoring non-copy request")
continue
#pass only reqyests with data known to inverntory
if dset not in inventory.datasets:
logger.debug(dset)
logger.debug(" non existing dataset, trash it ")
reqs2delete.append((dset, target))
continue
#check that the full replicas exist anywhere
reps = inventory.datasets[dset].replicas
fullreps = [i for i in reps if i.is_complete()]
if len(fullreps) < 1:
logger.debug(dset)
logger.debug(" no full replicas exist, ingnoring")
continue
#check if this dataset already exists in full at target site
if len([i for i in fullreps if i.site.name == target]) != 0:
logger.debug(dset)
logger.debug(" request already done, trash it")
reqs2delete.append((dset, target))
continue
if (dset, target) not in requests:
requests[(dset, target)] = UserRequest(dset, target)
requests[(dset, target)].updateRequest(reqtime, False)
for (dset, target), request in requests.items():
#if is_active true it means we already acting upon it
#collapse all other requests and update the date
if request.is_active:
logger.debug(dset)
logger.debug("master request is in")
reqs2delete.append((dset, target))
for (dset, target), request in requests.items():
created = datetime.datetime.fromtimestamp(request.request_time())
if not request.is_active:
newRequests[(dset, target)] = request
elif request.updated:
logger.debug("old request rank = " + str(request.nrequests))
sql = "UPDATE `requests_unified` SET `rank` = %d" % request.nrequests
sql += " WHERE `reqid` = %d" % request.reqid
self._mysql.query(sql)
self.release_requests('requests', reqs2delete)
self.release_requests('requests_unified', unif2delete)
self.release_lock()
for (dset, target), request in requests.items():
if request.is_active and request.status == 'new':
newRequests[(dset, target)] = request
datasets_to_request = []
logger.debug("\n attaching copy requests for datasets:")
for req in sorted(newRequests.values(),
key=lambda x: x.nrequests,
reverse=True):
ds = inventory.datasets[req.dataset]
logger.debug(ds.name)
datasets_to_request.append((ds, inventory.sites[req.site]))
return datasets_to_request
class MySQLAppManager(AppManager):
def __init__(self, config):
AppManager.__init__(self, config)
if not hasattr(self, '_mysql'):
db_params = Configuration(config.db_params)
db_params.reuse_connection = True # we use locks
self._mysql = MySQL(db_params)
# make sure applications row with id 0 exists
count = self._mysql.query(
'SELECT COUNT(*) FROM `applications` WHERE `id` = 0')[0]
if count == 0:
# Cannot insert with id = 0 (will be interpreted as next auto_increment id unless server-wide setting is changed)
# Inesrt with an implicit id first and update later
columns = ('auth_level', 'title', 'path', 'status', 'user_id',
'user_host')
values = (AppManager.LV_WRITE, 'wsgi', '', 'done', 0, '')
insert_id = self._mysql.insert_get_id('applications',
columns=columns,
values=values)
self._mysql.query(
'UPDATE `applications` SET `id` = 0 WHERE `id` = %s',
insert_id)
def get_applications(self,
older_than=0,
status=None,
app_id=None,
path=None): #override
sql = 'SELECT `applications`.`id`, 0+`applications`.`auth_level`, `applications`.`title`, `applications`.`path`, `applications`.`args`,'
sql += ' `applications`.`timeout`, 0+`applications`.`status`, `applications`.`server`, `applications`.`exit_code`, `users`.`name`, `applications`.`user_host`'
sql += ' FROM `applications` INNER JOIN `users` ON `users`.`id` = `applications`.`user_id`'
constraints = []
args = []
if older_than > 0:
constraints.append(
'UNIX_TIMESTAMP(`applications`.`timestamp`) < %s')
args.append(older_than)
if status is not None:
constraints.append('`applications`.`status` = %s')
args.append(status)
if app_id is not None:
constraints.append('`applications`.`id` = %s')
args.append(app_id)
if path is not None:
constraints.append('`applications`.`path` = %s')
args.append(path)
if len(constraints) != 0:
sql += ' WHERE ' + ' AND '.join(constraints)
args = tuple(args)
applications = []
for aid, auth_level, title, path, args, timeout, status, server, exit_code, uname, uhost in self._mysql.xquery(
sql, *args):
applications.append({
'appid': aid,
'auth_level': auth_level,
'user_name': uname,
'user_host': uhost,
'title': title,
'path': path,
'args': args,
'timeout': timeout,
'status': int(status),
'server': server,
'exit_code': exit_code
})
return applications
def get_writing_process_id(self): #override
result = self._mysql.query(
'SELECT `id` FROM `applications` WHERE `auth_level` = \'write\' AND `status` IN (\'assigned\', \'run\')'
)
if len(result) == 0:
return None
else:
return result[0]
def get_writing_process_host(self): #override
result = self._mysql.query(
'SELECT `server` FROM `applications` WHERE `auth_level` = \'write\' AND `status` IN (\'assigned\', \'run\')'
)
if len(result) == 0:
return None
else:
return result[0]
def get_web_write_process_id(self): #override
# user_id is repurposed for web server suprocess PID
return self._mysql.query(
'SELECT `user_id` FROM `applications` WHERE `id` = 0')[0]
def get_running_processes(self): #override
sql = 'SELECT `title`, 0+`auth_level`, `server`, UNIX_TIMESTAMP(`timestamp`) FROM `applications` WHERE `status` = \'run\''
result = []
for title, auth_level, server, timestamp in self._mysql.xquery(sql):
result.append((title, auth_level, server, timestamp))
return result
def schedule_application(self, title, path, args, user_id, host,
auth_level, timeout): #override
columns = ('auth_level', 'title', 'path', 'args', 'timeout', 'user_id',
'user_host')
values = (auth_level, title, path, args, timeout, user_id, host)
return self._mysql.insert_get_id('applications',
columns=columns,
values=values)
def _do_get_next_application(self, read_only, blocked_apps): #override
sql = 'SELECT `applications`.`id`, 0+`auth_level`, `title`, `path`, `args`, `timeout`, `users`.`name`, `user_host` FROM `applications`'
sql += ' INNER JOIN `users` ON `users`.`id` = `applications`.`user_id`'
sql += ' WHERE `status` = \'new\''
if read_only:
sql += ' AND `auth_level` != \'write\''
if len(blocked_apps) != 0:
sql += ' AND `title` NOT IN %s' % MySQL.stringify_sequence(
blocked_apps)
sql += ' ORDER BY `applications`.`id` LIMIT 1'
result = self._mysql.query(sql)
if len(result) == 0:
return None
else:
appid, auth_level, title, path, args, timeout, uname, uhost = result[
0]
return {
'appid': appid,
'auth_level': auth_level,
'user_name': uname,
'user_host': uhost,
'title': title,
'path': path,
'args': args,
'timeout': timeout
}
def update_application(self, app_id, **kwd): #override
sql = 'UPDATE `applications` SET '
args = []
updates = []
if 'status' in kwd:
updates.append('`status` = %s')
args.append(AppManager.status_name(kwd['status']))
if 'hostname' in kwd:
updates.append('`server` = %s')
args.append(kwd['hostname'])
if 'exit_code' in kwd:
updates.append('`exit_code` = %s')
args.append(kwd['exit_code'])
if 'path' in kwd:
updates.append('`path` = %s')
args.append(kwd['path'])
sql += ', '.join(updates)
sql += ' WHERE `id` = %s'
args.append(app_id)
self._mysql.query(sql, *tuple(args))
def delete_application(self, app_id): #override
self._mysql.query('DELETE FROM `applications` WHERE `id` = %s', app_id)
def start_write_web(self, host, pid): #override
# repurposing user_id for pid
sql = 'UPDATE `applications` SET `status` = \'run\', `server` = %s, `user_host` = %s, `user_id` = %s, `timestamp` = NOW() WHERE `id` = 0'
self._mysql.query(sql, host, host, pid)
def stop_write_web(self): #override
# We don't actually use the host name because there is only one slot for web write anyway
sql = 'UPDATE `applications` SET `status` = \'done\', `server` = \'\', `user_host` = \'\', `user_id` = 0 WHERE `id` = 0'
self._mysql.query(sql)
def check_application_auth(self, title, user, checksum): #override
result = self._mysql.query(
'SELECT `id` FROM `users` WHERE `name` = %s', user)
if len(result) == 0:
return False
user_id = result[0]
sql = 'SELECT `user_id` FROM `authorized_applications` WHERE `title` = %s AND `checksum` = UNHEX(%s)'
for auth_user_id in self._mysql.query(sql, title, checksum):
if auth_user_id == 0 or auth_user_id == user_id:
return True
return False
def list_authorized_applications(self,
titles=None,
users=None,
checksums=None): #override
sql = 'SELECT a.`title`, u.`name`, HEX(a.`checksum`) FROM `authorized_applications` AS a'
sql += ' LEFT JOIN `users` AS u ON u.`id` = a.`user_id`'
constraints = []
args = []
if type(titles) is list:
constraints.append('a.`title` IN (%s)' %
','.join(['%s'] * len(titles)))
args.extend(titles)
if type(users) is list:
constraints.append('u.`name` IN (%s)' %
','.join(['%s'] * len(users)))
args.extend(users)
if type(checksums) is list:
constraints.append('a.`checksum` IN (%s)' %
','.join(['UNHEX(%s)'] * len(checksums)))
args.extend(checksums)
if len(constraints) != 0:
sql += ' WHERE ' + ' AND '.join(constraints)
return self._mysql.query(sql, *tuple(args))
def authorize_application(self, title, checksum, user=None): #override
sql = 'INSERT INTO `authorized_applications` (`user_id`, `title`, `checksum`)'
if user is None:
sql += ' VALUES (0, %s, UNHEX(%s))'
args = (title, checksum)
else:
sql += ' SELECT u.`id`, %s, UNHEX(%s) FROM `users` AS u WHERE u.`name` = %s'
args = (title, checksum, user)
inserted = self._mysql.query(sql, *args)
return inserted != 0
def revoke_application_authorization(self, title, user=None): #override
sql = 'DELETE FROM `authorized_applications` WHERE (`user_id`, `title`) ='
if user is None:
sql += ' (0, %s)'
args = (title, )
else:
sql += ' (SELECT u.`id`, %s FROM `users` AS u WHERE u.`name` = %s)'
args = (title, user)
deleted = self._mysql.query(sql, *args)
return deleted != 0
def register_sequence(self, name, user, restart=False): #override
sql = 'INSERT INTO `application_sequences` (`name`, `user_id`, `restart`) SELECT %s, `id`, %s FROM `users` WHERE `name` = %s'
inserted = self._mysql.query(sql, name, 1 if restart else 0, user)
return inserted != 0
def find_sequence(self, name): #override
sql = 'SELECT u.`name`, s.`restart`, s.`status` FROM `application_sequences` AS s'
sql += ' INNER JOIN `users` AS u ON u.`id` = s.`user_id`'
sql += ' WHERE s.`name` = %s'
try:
user, restart, status = self._mysql.query(sql, name)[0]
except IndexError:
return None
return (name, user, (restart != 0), status == 'enabled')
def update_sequence(self, name, restart=None, enabled=None): #override
if restart is None and enabled is None:
return True
changes = []
args = []
if restart is not None:
changes.append('`restart` = %s')
args.append(1 if restart else 0)
if enabled is not None:
changes.append('`status` = %s')
args.append('enabled' if enabled else 'disabled')
args.append(name)
sql = 'UPDATE `application_sequences` SET ' + ', '.join(
changes) + ' WHERE `name` = %s'
updated = self._mysql.query(sql, *tuple(args))
return updated != 0
def delete_sequence(self, name): #override
sql = 'DELETE FROM `application_sequences` WHERE `name` = %s'
deleted = self._mysql.query(sql, name)
return deleted != 0
def get_sequences(self, enabled_only=True): #override
sql = 'SELECT `name` FROM `application_sequences`'
if enabled_only:
sql += ' WHERE `status` = \'enabled\''
return self._mysql.query(sql)
def create_appmanager(self): #override
if self.readonly_config is None:
db_params = self._mysql.config()
else:
db_params = self.readonly_config.db_params
config = Configuration(db_params=db_params)
return MySQLAppManager(config)
class RegistryDatabase(object):
"""
Similar to HistoryDatabase, this is just one abstraction layer that doesn't really hide the
backend technology for the registry. We still have the benefit of being able to use default
parameters to initialize the registry database handle.
"""
# default configuration
_config = Configuration()
@staticmethod
def set_default(config):
RegistryDatabase._config = Configuration(config)
def __init__(self, config = None):
if config is None:
config = RegistryDatabase._config
self.db = MySQL(config.db_params)
self.set_read_only(config.get('read_only', False))
def set_read_only(self, value = True):
self._read_only = True
def get_locked_apps(self):
sql = 'SELECT DISTINCT `application` FROM `activity_lock`'
return self.db.query(sql)
def get_app_lock(self, app):
# this function can be called within a table lock, so we need to lock what we use
self.db.lock_tables(read = [('activity_lock', 'l'), ('user_services', 's')])
sql = 'SELECT l.`user`, s.`name`, UNIX_TIMESTAMP(l.`timestamp`), l.`note` FROM `activity_lock` AS l'
sql += ' LEFT JOIN `user_services` AS s ON s.`id` = l.`service_id`'
sql += ' WHERE l.`application` = %s ORDER BY l.`timestamp` ASC';
lock_data = self.db.query(sql, app)
self.db.unlock_tables()
if len(lock_data) == 0:
return None, None, None, None, 0
first_user, first_service, lock_time, note = lock_data[0]
depth = 1
for user, service, _, _ in lock_data[1:]:
if user == first_user and service == first_service:
depth += 1
return first_user, first_service, lock_time, note, depth
def lock_app(self, app, user, service = None, note = None):
if service is None:
service_id = 0
else:
try:
sql = 'SELECT `id` FROM `user_services` WHERE `name` = %s'
service_id = self.db.query(sql, service)[0]
except IndexError:
service_id = 0
sql = 'INSERT INTO `activity_lock` (`user`, `service_id`, `application`, `timestamp`, `note`)'
sql += ' VALUES (%s, %s, %s, NOW(), %s)'
self.db.query(sql, user, service_id, app, note)
def unlock_app(self, app, user, service = None):
if service is None:
service_id = 0
else:
try:
sql = 'SELECT `id` FROM `user_services` WHERE `name` = %s'
service_id = self.db.query(sql, service)[0]
except IndexError:
service_id = 0
self.db.lock_tables(write = ['activity_lock', ('activity_lock', 'l')])
sql = 'DELETE FROM `activity_lock` WHERE `id` = ('
sql += ' SELECT m FROM ('
sql += ' SELECT MAX(`id`) m FROM `activity_lock` AS l'
sql += ' WHERE `user` = %s AND `service_id` = %s AND `application` = %s'
sql += ' ) AS tmp'
sql += ')'
self.db.query(sql, user, service_id, app)
# a little cleanup
if self.db.query('SELECT COUNT(*) FROM `activity_lock`')[0] == 0:
self.db.query('ALTER TABLE `activity_lock` AUTO_INCREMENT = 1')
self.db.unlock_tables()
import numpy as np
import pandas as pd
from dynamo.dataformat import Configuration
from dynamo.utils.interface.mysql import MySQL
from plotly.offline import download_plotlyjs, init_notebook_mode, plot, iplot
# # # # # # # #
# Query part #
# # # # # # # #
nowtime = datetime.datetime.fromtimestamp(int(time.time())).strftime('%Y-%m-%d %H:%M:%S')
# Dynamo database: inbatch
dynamo = MySQL(Configuration(db = 'dynamo', user = '******', passwd = 'putpasswordhere'))
sites = dynamo.xquery('SELECT `id`, `name` FROM `sites`')
sitesdict = {}
for ide, name in sites:
sitesdict[ide] = name
transfers = dynamo.xquery('SELECT tt.`source_id`, fs.`site_id`, f.`size` FROM `transfer_tasks` AS tt INNER JOIN file_subscriptions AS fs ON fs.`id` = tt.`subscription_id` INNER JOIN files as f on f.`id` = fs.`file_id` WHERE fs.`status`="inbatch" and fs.`delete`=0')
# Dynamo history database: exitcode
dynamohistory = MySQL(Configuration(db = 'dynamohistory', user = '******', passwd = 'putpasswordhere'))
historysites = dynamohistory.xquery('SELECT `id`, `name` FROM `sites`')
historysitesdict = {}
for ide, name in historysites:
historysitesdict[ide] = name
historyxfers = dynamohistory.xquery('SELECT `source_id`, `destination_id`, `exitcode` FROM `file_transfers` WHERE `source_id` != 0 AND `completed` > NOW() - INTERVAL 7 DAY')
def make_entry(self, site_name):
if self._read_only:
operation_id = 0
else:
site_id = self.save_sites([site_name], get_ids = True)[0]
operation_id = self.db.insert_get_id('copy_operations', columns = ('timestamp', 'site_id'), values = (MySQL.bare('NOW()'), site_id))
return HistoryRecord(HistoryRecord.OP_COPY, operation_id, site_name, int(time.time()))
class HistoryDatabase(object):
"""
Interface to the history database. This is a MySQL-specific implementation, and we actually
expose the backend database.. Will be a bit tricky to replace the backend when we need to do it.
What we do with the history DB is very much application specific, so it makes little sense
to have generic abstract interface to individual actions. The methods of this class are just a
few of the common operations that are necessary for any history recording.
"""
# default configuration
_config = Configuration()
@staticmethod
def set_default(config):
HistoryDatabase._config = Configuration(config)
def __init__(self, config = None):
if config is None:
config = HistoryDatabase._config
self.db = MySQL(config.db_params)
self.set_read_only(config.get('read_only', False))
def set_read_only(self, value = True):
self._read_only = value
def save_users(self, user_list, get_ids = False):
"""
@param user_list [(name, dn)]
"""
if self._read_only:
if get_ids:
return [0] * len(user_list)
else:
return
self.db.insert_many('users', ('name', 'dn'), None, user_list, do_update = True)
if get_ids:
return self.db.select_many('users', ('id',), 'dn', [u[1] for u in user_list])
def save_user_services(self, service_names, get_ids = False):
if self._read_only:
if get_ids:
return [0] * len(service_names)
else:
return
self.db.insert_many('user_services', ('name',), MySQL.make_tuple, service_names, do_update = True)
if get_ids:
return self.db.select_many('user_services', ('id',), 'name', service_names)
def save_partitions(self, partition_names, get_ids = False):
if self._read_only:
if get_ids:
return [0] * len(partition_names)
else:
return
self.db.insert_many('partitions', ('name',), MySQL.make_tuple, partition_names, do_update = True)
if get_ids:
return self.db.select_many('partitions', ('id',), 'name', partition_names)
def save_sites(self, site_names, get_ids = False):
if self._read_only:
if get_ids:
return [0] * len(site_names)
else:
return
self.db.insert_many('sites', ('name',), MySQL.make_tuple, site_names, do_update = True)
if get_ids:
return self.db.select_many('sites', ('id',), 'name', site_names)
def save_groups(self, group_names, get_ids = False):
if self._read_only:
if get_ids:
return [0] * len(group_names)
else:
return
self.db.insert_many('groups', ('name',), MySQL.make_tuple, group_names, do_update = True)
if get_ids:
return self.db.select_many('groups', ('id',), 'name', group_names)
def save_datasets(self, dataset_names, get_ids = False):
if self._read_only:
if get_ids:
return [0] * len(dataset_names)
else:
return
self.db.insert_many('datasets', ('name',), MySQL.make_tuple, dataset_names, do_update = True)
if get_ids:
return self.db.select_many('datasets', ('id',), 'name', dataset_names)
def save_blocks(self, block_list, get_ids = False):
"""
@param block_list [(dataset name, block name)]
"""
if self._read_only:
if get_ids:
return [0] * len(block_list)
else:
return
reuse_orig = self.db.reuse_connection
self.db.reuse_connection = True
datasets = set(b[0] for b in block_list)
self.save_datasets(datasets)
columns = [
'`dataset` varchar(512) CHARACTER SET latin1 COLLATE latin1_general_cs NOT NULL',
'`block` varchar(128) CHARACTER SET latin1 COLLATE latin1_general_cs NOT NULL'
]
self.db.create_tmp_table('blocks_tmp', columns)
self.db.insert_many('blocks_tmp', ('dataset', 'block'), None, block_list, db = self.db.scratch_db)
sql = 'INSERT INTO `blocks` (`dataset_id`, `name`)'
sql += ' SELECT d.`id`, b.`block` FROM `{scratch}`.`blocks_tmp` AS b'.format(scratch = self.db.scratch_db)
sql += ' INNER JOIN `datasets` AS d ON d.`name` = b.`dataset`'
self.db.query(sql)
if get_ids:
sql = 'SELECT b.`id` FROM `blocks` AS b'
sql += ' INNER JOIN (SELECT d.`id` dataset_id, t.`block` block_name FROM `{scratch}`.`blocks_tmp` AS t'.format(scratch = self.db.scratch_db)
sql += ' INNER JOIN `datasets` AS d ON d.`name` = t.`dataset`) AS j ON (j.`dataset_id`, j.`block_name`) = (b.`dataset_id`, b.`name`)'
ids = self.db.query(sql)
self.db.drop_tmp_table('blocks_tmp')
self.db.reuse_connection = reuse_orig
if get_ids:
return ids
def save_files(self, file_data, get_ids = False):
if self._read_only:
if get_ids:
return [0] * len(file_data)
else:
return
self.db.insert_many('files', ('name', 'size'), None, file_data, do_update = True)
if get_ids:
return self.db.select_many('files', ('id',), 'name', [f[0] for f in file_data])
class HistoryDatabase(object):
"""
Interface to the history database. This is a MySQL-specific implementation, and we actually
expose the backend database.. Will be a bit tricky to replace the backend when we need to do it.
What we do with the history DB is very much application specific, so it makes little sense
to have generic abstract interface to individual actions. The methods of this class are just a
few of the common operations that are necessary for any history recording.
"""
# default configuration
_config = Configuration()
@staticmethod
def set_default(config):
HistoryDatabase._config = Configuration(config)
def __init__(self, config=None):
if config is None:
config = HistoryDatabase._config
self.db = MySQL(config.db_params)
self.set_read_only(config.get('read_only', False))
def set_read_only(self, value=True):
self._read_only = value
def save_users(self, user_list, get_ids=False):
"""
@param user_list [(name, dn)]
"""
if self._read_only:
if get_ids:
return [0] * len(user_list)
else:
return
self.db.insert_many('users', ('name', 'dn'),
None,
user_list,
do_update=True)
if get_ids:
return self.db.select_many('users', ('id', ), 'dn',
[u[1] for u in user_list])
def save_user_services(self, service_names, get_ids=False):
if self._read_only:
if get_ids:
return [0] * len(service_names)
else:
return
self.db.insert_many('user_services', ('name', ),
MySQL.make_tuple,
service_names,
do_update=True)
if get_ids:
return self.db.select_many('user_services', ('id', ), 'name',
service_names)
def save_partitions(self, partition_names, get_ids=False):
if self._read_only:
if get_ids:
return [0] * len(partition_names)
else:
return
self.db.insert_many('partitions', ('name', ),
MySQL.make_tuple,
partition_names,
do_update=True)
if get_ids:
return self.db.select_many('partitions', ('id', ), 'name',
partition_names)
def save_sites(self, site_names, get_ids=False):
if self._read_only:
if get_ids:
return [0] * len(site_names)
else:
return
self.db.insert_many('sites', ('name', ),
MySQL.make_tuple,
site_names,
do_update=True)
if get_ids:
return self.db.select_many('sites', ('id', ), 'name', site_names)
def save_groups(self, group_names, get_ids=False):
if self._read_only:
if get_ids:
return [0] * len(group_names)
else:
return
self.db.insert_many('groups', ('name', ),
MySQL.make_tuple,
group_names,
do_update=True)
if get_ids:
return self.db.select_many('groups', ('id', ), 'name', group_names)
def save_datasets(self, dataset_names, get_ids=False):
if self._read_only:
if get_ids:
return [0] * len(dataset_names)
else:
return
self.db.insert_many('datasets', ('name', ),
MySQL.make_tuple,
dataset_names,
do_update=True)
if get_ids:
return self.db.select_many('datasets', ('id', ), 'name',
dataset_names)
def save_blocks(self, block_list, get_ids=False):
"""
@param block_list [(dataset name, block name)]
"""
if self._read_only:
if get_ids:
return [0] * len(block_list)
else:
return
reuse_orig = self.db.reuse_connection
self.db.reuse_connection = True
datasets = set(b[0] for b in block_list)
self.save_datasets(datasets)
columns = [
'`dataset` varchar(512) CHARACTER SET latin1 COLLATE latin1_general_cs NOT NULL',
'`block` varchar(128) CHARACTER SET latin1 COLLATE latin1_general_cs NOT NULL'
]
self.db.create_tmp_table('blocks_tmp', columns)
self.db.insert_many('blocks_tmp', ('dataset', 'block'),
None,
block_list,
db=self.db.scratch_db)
sql = 'INSERT INTO `blocks` (`dataset_id`, `name`)'
sql += ' SELECT d.`id`, b.`block` FROM `{scratch}`.`blocks_tmp` AS b'.format(
scratch=self.db.scratch_db)
sql += ' INNER JOIN `datasets` AS d ON d.`name` = b.`dataset`'
self.db.query(sql)
if get_ids:
sql = 'SELECT b.`id` FROM `blocks` AS b'
sql += ' INNER JOIN (SELECT d.`id` dataset_id, t.`block` block_name FROM `{scratch}`.`blocks_tmp` AS t'.format(
scratch=self.db.scratch_db)
sql += ' INNER JOIN `datasets` AS d ON d.`name` = t.`dataset`) AS j ON (j.`dataset_id`, j.`block_name`) = (b.`dataset_id`, b.`name`)'
ids = self.db.query(sql)
self.db.drop_tmp_table('blocks_tmp')
self.db.reuse_connection = reuse_orig
if get_ids:
return ids
def save_files(self, file_data, get_ids=False):
if self._read_only:
if get_ids:
return [0] * len(file_data)
else:
return
self.db.insert_many('files', ('name', 'size'),
None,
file_data,
do_update=True)
if get_ids:
return self.db.select_many('files', ('id', ), 'name',
[f[0] for f in file_data])
class MySQLReplicaLock(object):
"""
Dataset lock read from local DB.
Sets one attr:
locked_blocks: {site: set([blocks]) or None if dataset-level}
"""
produces = ['locked_blocks']
_default_config = None
@staticmethod
def set_default(config):
MySQLReplicaLock._default_config = Configuration(config)
def __init__(self, config = None):
if config is None:
if MySQLReplicaLock._default_config is None:
raise ConfigurationError('MySQLReplicaLock default config is not set')
config = MySQLReplicaLock._default_config
self._mysql = MySQL(config.get('db_params', None))
self.users = []
for user_id, role_id in config.get('users', []):
self.users.append((user_id, role_id))
def load(self, inventory):
for dataset in inventory.datasets.itervalues():
try:
dataset.attr.pop('locked_blocks')
except KeyError:
pass
if len(self.users) != 0:
entries = self._mysql.select_many('detox_locks', ('item', 'sites', 'groups'), ('user_id', 'role_id'), self.users)
else:
query = 'SELECT `item`, `sites`, `groups` FROM `detox_locks`'
entries = self._mysql.query(query)
for item_name, sites_pattern, groups_pattern in entries:
# wildcard not allowed in block name
try:
dataset_pattern, block_name = Block.from_full_name(item_name)
except ObjectError:
dataset_pattern, block_name = item_name, None
if '*' in dataset_pattern:
pat_exp = re.compile(fnmatch.translate(dataset_pattern))
datasets = []
for dataset in inventory.datasets.values():
# this is highly inefficient but I can't think of a better way
if pat_exp.match(dataset.name):
datasets.append(dataset)
else:
try:
dataset = inventory.datasets[dataset_pattern]
except KeyError:
LOG.debug('Cannot lock unknown dataset %s', dataset_pattern)
continue
datasets = [dataset]
specified_sites = []
if sites_pattern:
if sites_pattern == '*':
pass
elif '*' in sites_pattern:
pat_exp = re.compile(fnmatch.translate(sites_pattern))
specified_sites.extend(s for n, s in inventory.sites.iteritems() if pat_exp.match(n))
else:
try:
specified_sites.append(inventory.sites[sites_pattern])
except KeyError:
pass
specified_groups = []
if groups_pattern:
if groups_pattern == '*':
pass
elif '*' in groups_pattern:
pat_exp = re.compile(fnmatch.translate(groups_pattern))
specified_groups.extend(g for n, g in inventory.groups.iteritems() if pat_exp.match(n))
else:
try:
specified_groups.append(inventory.groups[groups_pattern])
except KeyError:
pass
for dataset in datasets:
sites = set(specified_sites)
groups = set(specified_groups)
if len(sites) == 0:
# either sites_pattern was not given (global lock) or no sites matched (typo?)
# we will treat this as a global lock
sites.update(r.site for r in dataset.replicas)
if len(groups) == 0:
# if no group matches the pattern, we will be on the safe side and treat it as a global lock
for replica in dataset.replicas:
groups.update(brep.group for brep in replica.block_replicas)
try:
locked_blocks = dataset.attr['locked_blocks']
except KeyError:
locked_blocks = dataset.attr['locked_blocks'] = {}
if block_name is None:
for replica in dataset.replicas:
if replica.site not in sites:
continue
if replica.site not in locked_blocks:
locked_blocks[replica.site] = set()
for block_replica in replica.block_replicas:
if block_replica.group not in groups:
continue
locked_blocks[replica.site].add(block_replica.block)
else:
block = dataset.find_block(block_name)
if block is None:
LOG.debug('Cannot lock unknown block %s', block_name)
continue
for replica in block.replicas:
if replica.site not in sites:
continue
if replica.group not in groups:
continue
if replica.site not in locked_blocks:
locked_blocks[replica.site] = set([block])
else:
locked_blocks[replica.site].add(block)
for dataset in inventory.datasets.itervalues():
try:
locked_blocks = dataset.attr['locked_blocks']
except KeyError:
continue
for site, blocks in locked_blocks.items():
if blocks is None:
continue
# if all blocks are locked, set to None (dataset-level lock)
if blocks == dataset.blocks:
locked_blocks[site] = None
LOG.info('Locked %d items.', len(entries))
class MySQLAuthorizer(Authorizer):
def __init__(self, config):
Authorizer.__init__(self, config)
if not hasattr(self, '_mysql'):
db_params = Configuration(config.db_params)
db_params.reuse_connection = True # we use locks
self._mysql = MySQL(db_params)
def user_exists(self, name):
result = self._mysql.query('SELECT COUNT(*) FROM `users` WHERE `name` = %s', name)[0]
return result != 0
def list_users(self):
return self._mysql.query('SELECT `name`, `email`, `dn` FROM `users` ORDER BY `id`')
def identify_user(self, dn = '', check_trunc = False, name = '', uid = None): #override
if dn:
result = self._mysql.query('SELECT `name`, `id`, `dn` FROM `users` WHERE `dn` = %s', dn)
if check_trunc and len(result) == 0:
while dn:
dn = dn[:dn.rfind('/')]
result = self._mysql.query('SELECT `name`, `id`, `dn` FROM `users` WHERE `dn` = %s', dn)
if len(result) != 0:
break
elif name:
result = self._mysql.query('SELECT `name`, `id`, `dn` FROM `users` WHERE `name` = %s', name)
else:
result = self._mysql.query('SELECT `name`, `id`, `dn` FROM `users` WHERE `id` = %s', uid)
if len(result) == 0:
return None
else:
return (result[0][0], int(result[0][1]), result[0][2])
def identify_role(self, name): #override
try:
name, rid = self._mysql.query('SELECT `name`, `id` FROM `roles` WHERE `name` = %s', name)[0]
except IndexError:
return None
else:
return (name, int(rid))
def list_roles(self):
return self._mysql.query('SELECT `name` FROM `roles`')
def list_authorization_targets(self): #override
sql = 'SELECT SUBSTRING(COLUMN_TYPE, 5) FROM `information_schema`.`COLUMNS`'
sql += ' WHERE `TABLE_SCHEMA` = \'dynamoserver\' AND `TABLE_NAME` = \'user_authorizations\' AND `COLUMN_NAME` = \'target\'';
result = self._mysql.query(sql)[0]
# eval the results as a python tuple
return list(eval(result))
def check_user_auth(self, user, role, target): #override
sql = 'SELECT `target` FROM `user_authorizations` WHERE `user_id` = (SELECT `id` FROM `users` WHERE `name` = %s) AND'
args = (user,)
if role is None:
sql += ' `role_id` = 0'
else:
sql += ' `role_id` = (SELECT `id` FROM `roles` WHERE `name` = %s)'
args += (role,)
targets = self._mysql.query(sql, *args)
if target is None:
return len(targets) != 0
else:
return target in targets
def list_user_auth(self, user): #override
sql = 'SELECT r.`name`, a.`target` FROM `user_authorizations` AS a'
sql += ' LEFT JOIN `roles` AS r ON r.`id` = a.`role_id`'
sql += ' WHERE a.`user_id` = (SELECT `id` FROM `users` WHERE `name` = %s)'
return self._mysql.query(sql, user)
def list_authorized_users(self, target): #override
sql = 'SELECT u.`name`, s.`name` FROM `user_authorizations` AS a'
sql += ' INNER JOIN `users` AS u ON u.`id` = a.`user_id`'
sql += ' INNER JOIN `roles` AS s ON s.`id` = a.`role_id`'
args = tuple()
if target is not None:
sql += ' WHERE a.`target` = %s'
args = (target,)
return self._mysql.query(sql, *args)
def create_authorizer(self): #override
if self.readonly_config is None:
db_params = self._mysql.config()
else:
db_params = self.readonly_config.db_params
config = Configuration(db_params = db_params)
return MySQLAuthorizer(config)